Wall clock time and date at job start Tue Mar 31 2020 02:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86799 * 119.99665 * 2 1 4 4 H 1.48501 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47498 * 300.00145 * 3 2 1 6 6 H 1.48506 * 109.47006 * 60.00490 * 3 2 1 7 7 C 1.39890 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99497 * 175.56176 * 7 2 1 9 9 C 1.41153 * 120.00561 * 355.55188 * 7 2 1 10 10 C 1.40866 * 120.16632 * 214.79076 * 9 7 2 11 11 C 1.36369 * 119.82801 * 179.97438 * 10 9 7 12 12 C 1.39485 * 120.16960 * 359.97438 * 11 10 9 13 13 N 1.39244 * 119.83611 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99714 * 35.30191 * 13 12 11 15 15 O 1.21578 * 120.00038 * 355.70641 * 14 13 12 16 16 N 1.34775 * 119.99819 * 175.71297 * 14 13 12 17 17 C 1.46499 * 119.99752 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.88870 * 31.18380 * 17 16 14 19 19 C 1.54488 * 110.96866 * 267.37407 * 17 16 14 20 20 N 1.46762 * 105.47336 * 216.46622 * 19 17 16 21 21 C 1.34417 * 111.30354 * 17.01773 * 20 19 17 22 22 O 1.21276 * 124.94513 * 179.55832 * 21 20 19 23 23 C 1.51286 * 110.11285 * 359.58941 * 21 20 19 24 24 C 1.39478 * 120.33256 * 0.25807 * 12 11 10 25 25 C 1.36374 * 120.16812 * 359.48202 * 24 12 11 26 26 H 0.96997 * 120.00598 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.08773 * 359.95661 * 10 9 7 28 28 H 1.08005 * 119.91715 * 180.02562 * 11 10 9 29 29 H 0.97000 * 119.99993 * 215.30306 * 13 12 11 30 30 H 0.96998 * 120.00404 * 359.97438 * 16 14 13 31 31 H 1.09005 * 110.24352 * 97.46743 * 19 17 16 32 32 H 1.08994 * 110.31887 * 335.50557 * 19 17 16 33 33 H 0.97006 * 124.34778 * 196.99368 * 20 19 17 34 34 H 1.09003 * 110.48359 * 102.42934 * 23 21 20 35 35 H 1.08997 * 110.48589 * 225.06348 * 23 21 20 36 36 H 1.08003 * 119.91843 * 179.74043 * 24 12 11 37 37 H 1.08000 * 120.09011 * 180.27415 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 0.0006 5 1 1.8839 2.3966 -1.2125 6 1 1.8840 2.3964 1.2126 7 6 2.0082 -1.2115 -0.0005 8 1 3.0858 -1.2128 -0.0729 9 6 1.3057 -2.4322 0.0937 10 6 1.8650 -3.5185 0.7948 11 6 1.1800 -4.6944 0.8820 12 6 -0.0715 -4.8230 0.2796 13 7 -0.7645 -6.0272 0.3725 14 6 -0.6817 -6.7673 1.4958 15 8 0.0585 -6.4239 2.3970 16 7 -1.4195 -7.8884 1.6200 17 6 -1.3299 -8.6926 2.8412 18 1 -1.1161 -8.0641 3.7056 19 6 -0.2707 -9.8073 2.6926 20 7 -0.8156 -10.9639 3.4131 21 6 -2.1356 -10.8279 3.6278 22 8 -2.8347 -11.6412 4.1940 23 6 -2.6223 -9.5130 3.0596 24 6 -0.6296 -3.7535 -0.4203 25 6 0.0411 -2.5696 -0.5116 26 1 -0.4851 0.8400 0.0004 27 1 2.8338 -3.4203 1.2618 28 1 1.6073 -5.5281 1.4195 29 1 -1.3069 -6.3332 -0.3712 30 1 -2.0103 -8.1623 0.9011 31 1 0.6722 -9.4938 3.1407 32 1 -0.1246 -10.0528 1.6407 33 1 -0.2907 -11.7285 3.6976 34 1 -3.1367 -9.6740 2.1121 35 1 -3.2781 -9.0099 3.7700 36 1 -1.5972 -3.8618 -0.8877 37 1 -0.3942 -1.7408 -1.0502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336500849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:32 Heat of formation + Delta-G solvation = -35.897933 kcal Electronic energy + Delta-G solvation = -21708.667302 eV Core-core repulsion = 18257.725825 eV Total energy + Delta-G solvation = -3450.941477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81282 -39.74503 -37.62371 -36.66473 -34.49748 -34.11848 -32.88523 -30.47880 -29.56937 -28.71670 -27.48446 -24.94552 -22.53367 -21.40980 -21.08390 -20.73583 -20.18039 -18.29733 -17.67591 -17.28583 -16.82933 -16.28476 -15.40414 -15.19124 -15.05175 -14.58108 -14.13696 -13.99304 -13.85477 -13.69439 -13.34873 -13.01465 -12.69173 -12.19029 -12.08943 -11.73359 -11.67431 -11.37315 -11.17714 -11.00451 -10.74524 -10.31298 -10.13131 -9.58769 -9.49083 -9.46412 -9.27174 -9.19426 -8.91408 -7.55515 -6.86103 -6.61943 -4.34422 2.26481 2.58761 2.77040 3.05036 3.07979 3.09027 3.12678 3.15882 3.55171 3.97924 4.03339 4.19441 4.43884 4.64344 4.68903 4.71622 5.12073 5.25810 5.44979 5.58938 5.65368 6.17254 6.31640 6.40925 6.44479 6.65533 6.73049 6.73990 7.02384 7.12990 7.23473 7.36402 7.64020 7.82229 7.90207 7.94016 8.08358 8.29340 8.38179 8.63433 8.86711 8.93053 9.02629 10.29217 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.049813 B = 0.002704 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.964604 B =10351.039300 C =10522.749303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.098 3.902 10 C -0.205 4.205 11 C -0.085 4.085 12 C 0.020 3.980 13 N -0.664 5.664 14 C 0.696 3.304 15 O -0.574 6.574 16 N -0.742 5.742 17 C 0.158 3.842 18 H 0.116 0.884 19 C 0.084 3.916 20 N -0.728 5.728 21 C 0.524 3.476 22 O -0.536 6.536 23 C -0.164 4.164 24 C -0.122 4.122 25 C -0.141 4.141 26 H 0.277 0.723 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.393 0.607 30 H 0.396 0.604 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.411 0.589 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -14.376 0.179 14.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.096 3.904 10 C -0.225 4.225 11 C -0.106 4.106 12 C -0.073 4.073 13 N -0.309 5.309 14 C 0.396 3.604 15 O -0.450 6.450 16 N -0.399 5.399 17 C 0.050 3.950 18 H 0.134 0.866 19 C -0.042 4.042 20 N -0.384 5.384 21 C 0.310 3.690 22 O -0.412 6.412 23 C -0.205 4.205 24 C -0.142 4.142 25 C -0.161 4.161 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.226 0.774 30 H 0.230 0.770 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.681 -14.186 1.279 14.711 hybrid contribution -0.001 0.213 -0.557 0.596 sum -3.681 -13.973 0.722 14.468 Atomic orbital electron populations 1.69768 1.07259 1.28563 1.38409 1.25872 0.94941 1.01154 0.92607 0.86157 0.80593 0.80903 0.78372 1.18609 1.20029 1.20013 1.19526 0.94748 0.90212 1.44674 0.90599 1.17731 0.92314 0.92043 0.88339 1.20807 1.01216 0.94958 1.05491 1.20406 0.92727 0.97908 0.99511 1.17058 0.93787 0.84967 1.11487 1.42097 1.51440 1.22099 1.15281 1.16015 0.81248 0.79858 0.83247 1.90926 1.41919 1.71465 1.40717 1.45029 1.48558 1.26431 1.19905 1.21501 0.92887 0.91172 0.89408 0.86610 1.22679 0.98625 0.85223 0.97649 1.46250 1.09972 1.23076 1.59133 1.20710 0.82296 0.87925 0.78110 1.90771 1.59704 1.47685 1.43059 1.22667 0.98858 0.94544 1.04451 1.20290 0.98351 0.93031 1.02557 1.21188 0.97300 0.95498 1.02135 0.91233 0.88627 0.87336 0.77428 0.76959 0.89248 0.90466 0.75037 0.87170 0.87021 0.89143 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.89 10.59 55.54 0.59 -20.31 16 2 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 3 Si 0.91 18.82 29.56 -169.99 -5.03 13.80 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.13 9.02 -37.86 -0.34 -12.47 16 8 H 0.08 1.93 7.85 -52.48 -0.41 1.51 16 9 C 0.10 2.58 5.55 -106.80 -0.59 1.99 16 10 C -0.20 -5.06 9.74 -39.26 -0.38 -5.44 16 11 C -0.09 -1.97 8.61 -39.79 -0.34 -2.31 16 12 C 0.02 0.41 6.31 -83.57 -0.53 -0.11 16 13 N -0.66 -10.54 5.31 -14.10 -0.07 -10.61 16 14 C 0.70 10.75 8.39 -86.92 -0.73 10.02 16 15 O -0.57 -11.39 13.40 5.30 0.07 -11.32 16 16 N -0.74 -7.28 5.15 -57.08 -0.29 -7.57 16 17 C 0.16 1.41 3.53 -66.30 -0.23 1.18 16 18 H 0.12 1.26 7.54 -51.93 -0.39 0.87 16 19 C 0.08 0.66 7.52 -3.12 -0.02 0.63 16 20 N -0.73 -5.73 6.24 -59.20 -0.37 -6.10 16 21 C 0.52 5.30 8.43 -10.86 -0.09 5.21 16 22 O -0.54 -7.62 18.03 5.56 0.10 -7.52 16 23 C -0.16 -1.24 6.58 -26.74 -0.18 -1.42 16 24 C -0.12 -2.67 9.90 -39.79 -0.39 -3.06 16 25 C -0.14 -3.54 8.62 -39.26 -0.34 -3.88 16 26 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 27 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 28 H 0.11 2.46 6.22 -52.48 -0.33 2.13 16 29 H 0.39 4.67 8.83 -40.82 -0.36 4.31 16 30 H 0.40 2.62 8.45 -40.82 -0.35 2.27 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.41 2.65 8.96 -40.82 -0.37 2.29 16 34 H 0.11 0.63 7.81 -51.93 -0.41 0.22 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 37 H 0.13 3.43 6.13 -52.49 -0.32 3.10 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -32.68 317.79 -8.66 -41.34 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -4.17 Total: 11.55 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -4.27 Total: -8.04 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.15 Total: -44.60 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.17 Total: -18.84 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.68 -8.66 -41.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336500849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.441 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds