Wall clock time and date at job start Tue Mar 31 2020 02:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86799 * 119.99665 * 2 1 4 4 H 1.48501 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47498 * 300.00145 * 3 2 1 6 6 H 1.48506 * 109.47006 * 60.00490 * 3 2 1 7 7 C 1.39890 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99497 * 175.56176 * 7 2 1 9 9 C 1.41153 * 120.00561 * 355.55188 * 7 2 1 10 10 C 1.40866 * 120.16632 * 214.79076 * 9 7 2 11 11 C 1.36369 * 119.82801 * 179.97438 * 10 9 7 12 12 C 1.39485 * 120.16960 * 359.97438 * 11 10 9 13 13 N 1.39244 * 119.83611 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99714 * 35.30191 * 13 12 11 15 15 O 1.21578 * 120.00038 * 355.70641 * 14 13 12 16 16 N 1.34775 * 119.99819 * 175.71297 * 14 13 12 17 17 C 1.46499 * 119.99752 * 180.02562 * 16 14 13 18 18 H 1.08998 * 110.88870 * 31.18380 * 17 16 14 19 19 C 1.54488 * 110.96866 * 267.37407 * 17 16 14 20 20 N 1.46762 * 105.47336 * 216.46622 * 19 17 16 21 21 C 1.34417 * 111.30354 * 17.01773 * 20 19 17 22 22 O 1.21276 * 124.94513 * 179.55832 * 21 20 19 23 23 C 1.51286 * 110.11285 * 359.58941 * 21 20 19 24 24 C 1.39478 * 120.33256 * 0.25807 * 12 11 10 25 25 C 1.36374 * 120.16812 * 359.48202 * 24 12 11 26 26 H 0.96997 * 120.00598 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.08773 * 359.95661 * 10 9 7 28 28 H 1.08005 * 119.91715 * 180.02562 * 11 10 9 29 29 H 0.97000 * 119.99993 * 215.30306 * 13 12 11 30 30 H 0.96998 * 120.00404 * 359.97438 * 16 14 13 31 31 H 1.09005 * 110.24352 * 97.46743 * 19 17 16 32 32 H 1.08994 * 110.31887 * 335.50557 * 19 17 16 33 33 H 0.97006 * 124.34778 * 196.99368 * 20 19 17 34 34 H 1.09003 * 110.48359 * 102.42934 * 23 21 20 35 35 H 1.08997 * 110.48589 * 225.06348 * 23 21 20 36 36 H 1.08003 * 119.91843 * 179.74043 * 24 12 11 37 37 H 1.08000 * 120.09011 * 180.27415 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 0.0006 5 1 1.8839 2.3966 -1.2125 6 1 1.8840 2.3964 1.2126 7 6 2.0082 -1.2115 -0.0005 8 1 3.0858 -1.2128 -0.0729 9 6 1.3057 -2.4322 0.0937 10 6 1.8650 -3.5185 0.7948 11 6 1.1800 -4.6944 0.8820 12 6 -0.0715 -4.8230 0.2796 13 7 -0.7645 -6.0272 0.3725 14 6 -0.6817 -6.7673 1.4958 15 8 0.0585 -6.4239 2.3970 16 7 -1.4195 -7.8884 1.6200 17 6 -1.3299 -8.6926 2.8412 18 1 -1.1161 -8.0641 3.7056 19 6 -0.2707 -9.8073 2.6926 20 7 -0.8156 -10.9639 3.4131 21 6 -2.1356 -10.8279 3.6278 22 8 -2.8347 -11.6412 4.1940 23 6 -2.6223 -9.5130 3.0596 24 6 -0.6296 -3.7535 -0.4203 25 6 0.0411 -2.5696 -0.5116 26 1 -0.4851 0.8400 0.0004 27 1 2.8338 -3.4203 1.2618 28 1 1.6073 -5.5281 1.4195 29 1 -1.3069 -6.3332 -0.3712 30 1 -2.0103 -8.1623 0.9011 31 1 0.6722 -9.4938 3.1407 32 1 -0.1246 -10.0528 1.6407 33 1 -0.2907 -11.7285 3.6976 34 1 -3.1367 -9.6740 2.1121 35 1 -3.2781 -9.0099 3.7700 36 1 -1.5972 -3.8618 -0.8877 37 1 -0.3942 -1.7408 -1.0502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336500849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:32 Heat of formation + Delta-G solvation = -60.705322 kcal Electronic energy + Delta-G solvation = -21709.743031 eV Core-core repulsion = 18257.725825 eV Total energy + Delta-G solvation = -3452.017206 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75847 -40.93208 -39.21408 -37.70209 -36.09185 -35.19887 -34.52163 -31.55705 -31.29726 -30.30962 -28.29647 -26.66588 -23.81001 -22.94729 -22.23707 -21.88717 -21.40008 -19.55745 -19.12049 -18.59372 -18.00096 -17.37717 -16.97568 -16.35846 -16.17838 -15.80410 -15.58680 -15.21435 -14.95192 -14.60660 -14.55834 -14.31621 -14.04581 -13.93748 -13.54260 -13.18192 -12.96778 -12.80124 -12.68419 -12.48307 -12.39529 -11.78490 -11.34661 -11.23915 -11.16709 -10.94621 -10.61313 -10.24259 -10.11472 -9.40204 -8.63941 -8.46136 -6.28097 0.89076 1.20581 1.41547 1.47793 1.48548 1.56197 1.68115 2.18954 2.26969 2.39993 2.85303 3.22849 3.43681 3.49343 3.73895 3.89328 4.02319 4.45371 4.53329 4.59201 4.64598 4.81592 4.85983 4.99673 5.18798 5.20567 5.37590 5.44816 5.50280 5.73454 5.75401 5.87164 5.95802 6.08308 6.16235 6.29969 6.45817 6.74175 7.01914 7.06610 7.16255 7.18737 7.68524 8.46285 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.049813 B = 0.002704 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.964604 B =10351.039300 C =10522.749303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.264 1.264 6 H -0.271 1.271 7 C -0.498 4.498 8 H 0.070 0.930 9 C 0.064 3.936 10 C -0.220 4.220 11 C -0.096 4.096 12 C 0.044 3.956 13 N -0.656 5.656 14 C 0.697 3.303 15 O -0.618 6.618 16 N -0.714 5.714 17 C 0.156 3.844 18 H 0.096 0.904 19 C 0.090 3.910 20 N -0.717 5.717 21 C 0.520 3.480 22 O -0.582 6.582 23 C -0.151 4.151 24 C -0.120 4.120 25 C -0.160 4.160 26 H 0.283 0.717 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.416 0.584 30 H 0.418 0.582 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.418 0.582 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 -15.414 -0.496 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.196 1.196 7 C -0.529 4.529 8 H 0.089 0.911 9 C 0.061 3.939 10 C -0.240 4.240 11 C -0.116 4.116 12 C -0.051 4.051 13 N -0.304 5.304 14 C 0.398 3.602 15 O -0.498 6.498 16 N -0.372 5.372 17 C 0.049 3.951 18 H 0.115 0.885 19 C -0.036 4.036 20 N -0.372 5.372 21 C 0.307 3.693 22 O -0.462 6.462 23 C -0.191 4.191 24 C -0.141 4.141 25 C -0.180 4.180 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.130 0.870 29 H 0.253 0.747 30 H 0.256 0.744 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.258 0.742 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.733 -15.297 0.562 16.022 hybrid contribution 0.267 0.315 -0.314 0.519 sum -4.466 -14.982 0.248 15.635 Atomic orbital electron populations 1.69831 1.08462 1.29727 1.39074 1.26689 0.95806 1.04173 0.91758 0.85094 0.79074 0.76384 0.78704 1.18501 1.18822 1.19569 1.19726 0.94736 0.91418 1.47028 0.91149 1.18031 0.93463 0.92709 0.89658 1.20932 1.01575 0.95591 1.05860 1.20538 0.93678 0.97415 0.99995 1.17051 0.92923 0.86440 1.08638 1.41849 1.51328 1.20598 1.16659 1.16121 0.81112 0.80658 0.82345 1.90914 1.43917 1.72814 1.42140 1.44688 1.47316 1.24410 1.20747 1.21493 0.94298 0.91110 0.88172 0.88546 1.22635 0.97895 0.84548 0.98507 1.46240 1.09497 1.23215 1.58257 1.21075 0.82575 0.88214 0.77480 1.90755 1.60823 1.49351 1.45273 1.22614 0.98097 0.92590 1.05789 1.20535 0.99334 0.91975 1.02212 1.21164 0.97469 0.96512 1.02827 0.90618 0.88789 0.86987 0.74652 0.74406 0.89540 0.88788 0.74221 0.84420 0.86467 0.85698 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.19 10.59 21.82 0.23 -43.96 16 2 C 0.03 1.39 5.42 85.23 0.46 1.85 16 3 Si 0.99 39.08 29.56 68.60 2.03 41.11 16 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.50 -27.20 9.02 23.39 0.21 -26.99 16 8 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 9 C 0.06 3.46 5.55 -21.28 -0.12 3.34 16 10 C -0.22 -11.15 9.74 22.48 0.22 -10.93 16 11 C -0.10 -4.41 8.61 22.13 0.19 -4.22 16 12 C 0.04 1.77 6.31 38.56 0.24 2.02 16 13 N -0.66 -18.81 5.31 -316.79 -1.68 -20.49 16 14 C 0.70 19.65 8.39 179.05 1.50 21.15 16 15 O -0.62 -23.69 13.40 -3.96 -0.05 -23.74 16 16 N -0.71 -11.42 5.15 -452.77 -2.33 -13.75 16 17 C 0.16 2.37 3.53 46.05 0.16 2.53 16 18 H 0.10 1.95 7.54 -2.39 -0.02 1.93 16 19 C 0.09 1.16 7.52 86.84 0.65 1.81 16 20 N -0.72 -9.77 6.24 -459.80 -2.87 -12.64 16 21 C 0.52 9.50 8.43 87.90 0.74 10.24 16 22 O -0.58 -16.01 18.03 -3.02 -0.05 -16.06 16 23 C -0.15 -1.81 6.58 30.59 0.20 -1.61 16 24 C -0.12 -5.11 9.90 22.13 0.22 -4.89 16 25 C -0.16 -8.12 8.62 22.48 0.19 -7.93 16 26 H 0.28 13.48 8.30 -92.71 -0.77 12.71 16 27 H 0.09 4.62 8.06 -2.91 -0.02 4.60 16 28 H 0.11 5.05 6.22 -2.91 -0.02 5.03 16 29 H 0.42 8.12 8.83 -92.71 -0.82 7.30 16 30 H 0.42 3.48 8.45 -92.71 -0.78 2.69 16 31 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.09 0.97 8.07 -2.39 -0.02 0.95 16 33 H 0.42 4.65 8.96 -92.70 -0.83 3.82 16 34 H 0.14 0.94 7.81 -2.39 -0.02 0.92 16 35 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.12 6.25 6.13 -2.91 -0.02 6.23 16 Total: -1.00 -73.58 317.79 -1.13 -74.71 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -1.28 Total: 28.45 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.88 Total: -13.63 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -6.65 Total: -90.84 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.11 Total: -39.81 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -73.58 -1.13 -74.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336500849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.006 kcal (2) G-P(sol) polarization free energy of solvation -73.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds