Wall clock time and date at job start Tue Mar 31 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00087 * 2 1 4 4 N 1.46502 * 109.47129 * 125.00026 * 3 2 1 5 5 C 1.46495 * 119.99915 * 265.59764 * 4 3 2 6 6 C 1.50702 * 109.47241 * 264.94710 * 5 4 3 7 7 H 1.07993 * 120.00422 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99752 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00091 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99803 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47325 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47278 * 120.00086 * 10 8 6 13 13 H 1.48498 * 109.47264 * 239.99683 * 10 8 6 14 14 C 1.34780 * 120.00185 * 85.60497 * 4 3 2 15 15 O 1.21360 * 119.99532 * 354.62021 * 14 4 3 16 16 C 1.49347 * 119.99961 * 174.34899 * 14 4 3 17 17 O 1.21376 * 120.00250 * 354.73633 * 16 14 4 18 18 N 1.34773 * 120.00001 * 174.74059 * 16 14 4 19 19 C 1.39748 * 120.00314 * 185.25528 * 18 16 14 20 20 C 1.39339 * 120.49059 * 323.96707 * 19 18 16 21 21 C 1.38493 * 118.35104 * 179.75816 * 20 19 18 22 22 C 1.38284 * 119.24419 * 0.53448 * 21 20 19 23 23 N 1.31854 * 120.93136 * 359.70392 * 22 21 20 24 24 C 1.31809 * 121.80335 * 0.02562 * 23 22 21 25 25 H 1.08002 * 119.99606 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.99844 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00300 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47331 * 4.99581 * 3 2 1 29 29 H 1.09005 * 109.46916 * 245.00082 * 3 2 1 30 30 H 1.08998 * 109.47274 * 24.94452 * 5 4 3 31 31 H 1.08998 * 109.46989 * 144.94492 * 5 4 3 32 32 H 0.96996 * 119.99517 * 180.02562 * 9 8 6 33 33 H 0.97001 * 120.00182 * 5.25089 * 18 16 14 34 34 H 1.08000 * 120.82241 * 359.97438 * 20 19 18 35 35 H 1.08005 * 120.37651 * 180.25352 * 21 20 19 36 36 H 1.07997 * 119.53122 * 179.72338 * 22 21 20 37 37 H 1.08006 * 119.67495 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5913 1.9522 2.3961 6 6 3.0736 3.3796 2.4314 7 1 3.6251 3.7841 1.5956 8 6 2.8116 4.1687 3.5312 9 7 2.1404 3.6760 4.5493 10 14 3.4099 5.9377 3.5753 11 1 4.1351 6.2465 2.3167 12 1 2.2467 6.8504 3.7136 13 1 4.3240 6.1224 4.7309 14 6 4.2200 0.7860 1.0088 15 8 4.5189 0.1869 -0.0034 16 6 5.2127 0.9235 2.1161 17 8 4.9508 1.6064 3.0847 18 7 6.3995 0.2894 2.0397 19 6 7.2832 0.3277 3.1216 20 6 7.3933 1.4753 3.9042 21 6 8.2793 1.4630 4.9686 22 6 9.0277 0.3258 5.2115 23 7 8.9038 -0.7427 4.4490 24 6 8.0691 -0.7756 3.4294 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 1.5048 1.9337 2.4803 31 1 3.0296 1.3999 3.2273 32 1 1.9558 4.2313 5.3228 33 1 6.6403 -0.1938 1.2338 34 1 6.7999 2.3515 3.6882 35 1 8.3877 2.3332 5.5991 36 1 9.7232 0.3127 6.0375 37 1 7.9955 -1.6691 2.8271 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340615409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:48 Heat of formation + Delta-G solvation = 11.156755 kcal Electronic energy + Delta-G solvation = -22784.184755 eV Core-core repulsion = 19335.283723 eV Total energy + Delta-G solvation = -3448.901032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.79804 -39.64023 -37.99191 -36.00371 -34.73743 -33.33673 -32.13424 -32.01060 -29.94710 -27.60468 -26.53007 -24.31149 -23.57881 -23.02527 -21.76288 -20.00900 -19.25199 -17.70534 -16.94831 -16.83329 -16.63666 -15.97419 -15.82549 -15.31669 -14.85182 -14.61124 -14.37498 -14.00846 -13.76036 -13.50554 -13.15271 -12.82513 -12.64557 -12.34017 -12.05820 -11.72280 -11.59639 -11.21315 -10.96722 -10.89631 -10.67882 -10.51086 -10.08891 -9.75255 -9.62225 -9.51086 -9.23859 -8.72547 -8.38654 -8.21175 -7.95553 -6.08328 -4.10386 1.08574 1.39843 2.05662 2.37275 2.88949 3.25136 3.33287 3.36392 3.69969 3.96651 4.04944 4.39893 4.55983 4.85337 4.96506 5.07870 5.22745 5.23059 5.28392 5.42663 5.46693 5.68449 5.75477 6.03239 6.16519 6.17557 6.32629 6.37700 6.52933 6.81623 6.87920 6.94621 7.23808 7.29405 7.44064 7.79846 7.98649 8.00073 8.11866 8.23181 8.55681 8.89156 9.52018 11.00681 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.006537 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.223710 B = 4282.144406 C = 6218.110150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.143 3.857 4 N -0.555 5.555 5 C 0.231 3.769 6 C -0.512 4.512 7 H 0.055 0.945 8 C 0.069 3.931 9 N -0.890 5.890 10 Si 0.893 3.107 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.508 3.492 15 O -0.558 6.558 16 C 0.487 3.513 17 O -0.426 6.426 18 N -0.659 5.659 19 C 0.108 3.892 20 C -0.078 4.078 21 C -0.150 4.150 22 C 0.071 3.929 23 N -0.470 5.470 24 C 0.072 3.928 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.262 0.738 33 H 0.418 0.582 34 H 0.155 0.845 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -6.239 -3.679 9.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C 0.020 3.980 4 N -0.284 5.284 5 C 0.113 3.887 6 C -0.551 4.551 7 H 0.073 0.927 8 C -0.133 4.133 9 N -0.529 5.529 10 Si 0.721 3.279 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.290 3.710 15 O -0.439 6.439 16 C 0.268 3.732 17 O -0.293 6.293 18 N -0.309 5.309 19 C 0.011 3.989 20 C -0.106 4.106 21 C -0.171 4.171 22 C -0.086 4.086 23 N -0.179 5.179 24 C -0.088 4.088 25 H 0.117 0.883 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.256 0.744 34 H 0.172 0.828 35 H 0.155 0.845 36 H 0.171 0.829 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.670 -6.673 -3.125 9.939 hybrid contribution -0.196 1.583 -0.334 1.629 sum 6.474 -5.090 -3.459 8.932 Atomic orbital electron populations 1.23808 0.95728 1.01760 1.01179 1.23319 0.96086 0.99127 0.99292 1.20604 0.92131 0.95448 0.89797 1.48273 1.11333 1.52749 1.16049 1.19915 0.96386 0.93783 0.78650 1.21203 1.35666 0.95385 1.02823 0.92689 1.24801 0.95017 0.98327 0.95197 1.69926 1.39909 1.36395 1.06641 0.86535 0.78570 0.84824 0.78010 1.19929 1.21031 1.20947 1.19713 0.83595 0.80724 0.86938 1.90663 1.78934 1.43193 1.31098 1.20498 0.82603 0.81351 0.88732 1.91024 1.75250 1.32256 1.30737 1.43162 1.16223 1.54458 1.17057 1.18825 0.93547 0.95019 0.91556 1.21936 0.96353 0.97904 0.94418 1.22108 0.96613 1.00170 0.98163 1.22651 0.98595 0.89060 0.98321 1.67606 1.18020 1.27924 1.04323 1.22577 0.94557 0.96220 0.95491 0.88318 0.88685 0.87491 0.89048 0.89962 0.94752 0.92200 0.92864 0.74446 0.82777 0.84523 0.82860 0.82671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.51 14.32 29.01 0.42 -2.09 16 2 C -0.16 -2.45 9.81 -36.02 -0.35 -2.81 16 3 C 0.14 2.47 5.74 -5.19 -0.03 2.44 16 4 N -0.55 -11.39 2.46 -176.98 -0.44 -11.83 16 5 C 0.23 5.58 4.73 -5.20 -0.02 5.56 16 6 C -0.51 -13.46 7.72 -34.44 -0.27 -13.72 16 7 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 8 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 9 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 10 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 C 0.51 10.13 7.64 -11.63 -0.09 10.04 16 15 O -0.56 -10.97 16.20 5.49 0.09 -10.88 16 16 C 0.49 9.45 7.55 -11.64 -0.09 9.37 16 17 O -0.43 -9.66 9.68 5.47 0.05 -9.61 16 18 N -0.66 -10.26 5.33 -10.20 -0.05 -10.31 16 19 C 0.11 1.64 6.30 -83.59 -0.53 1.12 16 20 C -0.08 -1.25 8.81 -39.08 -0.34 -1.60 16 21 C -0.15 -2.01 10.10 -39.47 -0.40 -2.41 16 22 C 0.07 0.90 11.18 -17.53 -0.20 0.70 16 23 N -0.47 -6.61 10.35 -13.07 -0.14 -6.75 16 24 C 0.07 0.97 11.13 -17.31 -0.19 0.78 16 25 H 0.10 1.26 7.84 -52.49 -0.41 0.85 16 26 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 27 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.09 1.54 7.69 -51.93 -0.40 1.14 16 29 H 0.08 1.37 7.64 -51.93 -0.40 0.98 16 30 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 31 H 0.06 1.58 5.94 -51.93 -0.31 1.27 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.42 5.49 8.31 -40.82 -0.34 5.15 16 34 H 0.15 2.82 6.38 -52.49 -0.33 2.49 16 35 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 37 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -30.55 326.90 -6.30 -36.85 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -4.27 Total: 6.89 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -2.19 Total: 9.14 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.11 Total: -53.36 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: 0.14 Total: -20.49 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.55 -6.30 -36.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340615409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.002 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds