Wall clock time and date at job start Tue Mar 31 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 120.00087 * 2 1 4 4 N 1.46502 * 109.47129 * 125.00026 * 3 2 1 5 5 C 1.46495 * 119.99915 * 265.59764 * 4 3 2 6 6 C 1.50702 * 109.47241 * 264.94710 * 5 4 3 7 7 H 1.07993 * 120.00422 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99752 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00091 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99803 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47325 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47278 * 120.00086 * 10 8 6 13 13 H 1.48498 * 109.47264 * 239.99683 * 10 8 6 14 14 C 1.34780 * 120.00185 * 85.60497 * 4 3 2 15 15 O 1.21360 * 119.99532 * 354.62021 * 14 4 3 16 16 C 1.49347 * 119.99961 * 174.34899 * 14 4 3 17 17 O 1.21376 * 120.00250 * 354.73633 * 16 14 4 18 18 N 1.34773 * 120.00001 * 174.74059 * 16 14 4 19 19 C 1.39748 * 120.00314 * 185.25528 * 18 16 14 20 20 C 1.39339 * 120.49059 * 323.96707 * 19 18 16 21 21 C 1.38493 * 118.35104 * 179.75816 * 20 19 18 22 22 C 1.38284 * 119.24419 * 0.53448 * 21 20 19 23 23 N 1.31854 * 120.93136 * 359.70392 * 22 21 20 24 24 C 1.31809 * 121.80335 * 0.02562 * 23 22 21 25 25 H 1.08002 * 119.99606 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.99844 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.00300 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47331 * 4.99581 * 3 2 1 29 29 H 1.09005 * 109.46916 * 245.00082 * 3 2 1 30 30 H 1.08998 * 109.47274 * 24.94452 * 5 4 3 31 31 H 1.08998 * 109.46989 * 144.94492 * 5 4 3 32 32 H 0.96996 * 119.99517 * 180.02562 * 9 8 6 33 33 H 0.97001 * 120.00182 * 5.25089 * 18 16 14 34 34 H 1.08000 * 120.82241 * 359.97438 * 20 19 18 35 35 H 1.08005 * 120.37651 * 180.25352 * 21 20 19 36 36 H 1.07997 * 119.53122 * 179.72338 * 22 21 20 37 37 H 1.08006 * 119.67495 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5913 1.9522 2.3961 6 6 3.0736 3.3796 2.4314 7 1 3.6251 3.7841 1.5956 8 6 2.8116 4.1687 3.5312 9 7 2.1404 3.6760 4.5493 10 14 3.4099 5.9377 3.5753 11 1 4.1351 6.2465 2.3167 12 1 2.2467 6.8504 3.7136 13 1 4.3240 6.1224 4.7309 14 6 4.2200 0.7860 1.0088 15 8 4.5189 0.1869 -0.0034 16 6 5.2127 0.9235 2.1161 17 8 4.9508 1.6064 3.0847 18 7 6.3995 0.2894 2.0397 19 6 7.2832 0.3277 3.1216 20 6 7.3933 1.4753 3.9042 21 6 8.2793 1.4630 4.9686 22 6 9.0277 0.3258 5.2115 23 7 8.9038 -0.7427 4.4490 24 6 8.0691 -0.7756 3.4294 25 1 -0.5399 0.9354 -0.0004 26 1 -0.5399 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 1.5048 1.9337 2.4803 31 1 3.0296 1.3999 3.2273 32 1 1.9558 4.2313 5.3228 33 1 6.6403 -0.1938 1.2338 34 1 6.7999 2.3515 3.6882 35 1 8.3877 2.3332 5.5991 36 1 9.7232 0.3127 6.0375 37 1 7.9955 -1.6691 2.8271 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340615409.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:51:47 Heat of formation + Delta-G solvation = -8.700532 kcal Electronic energy + Delta-G solvation = -22785.045832 eV Core-core repulsion = 19335.283723 eV Total energy + Delta-G solvation = -3449.762109 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18766 -40.96082 -39.45964 -37.56676 -36.07685 -35.03726 -33.83589 -33.12935 -31.14412 -29.43979 -28.01204 -25.77500 -24.88625 -24.60596 -23.11516 -21.32997 -20.60076 -19.15454 -18.58280 -18.39290 -17.99372 -17.31532 -17.20017 -16.92795 -16.36488 -16.14371 -15.96786 -15.21269 -14.92830 -14.80211 -14.63051 -14.32422 -14.08791 -14.02320 -13.54926 -13.11338 -13.05962 -12.88373 -12.75242 -12.40236 -12.27661 -11.97639 -11.89707 -11.65720 -10.84778 -10.69681 -10.55891 -10.42544 -10.05253 -9.70050 -9.38227 -8.14505 -6.22320 -0.08859 0.24540 0.57590 1.11426 1.37608 1.39967 1.49851 1.58362 2.17828 2.40200 2.62774 2.84241 3.19690 3.34003 3.60279 3.85982 3.98127 4.01309 4.11915 4.16387 4.33821 4.45506 4.66576 4.75438 4.80299 5.01667 5.02341 5.14848 5.20054 5.32524 5.44159 5.67276 5.74135 5.75044 5.83464 6.02961 6.10415 6.28123 6.72201 6.81517 6.92770 7.04054 7.43370 8.94145 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.011576 B = 0.006537 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.223710 B = 4282.144406 C = 6218.110150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.183 4.183 3 C 0.140 3.860 4 N -0.561 5.561 5 C 0.252 3.748 6 C -0.512 4.512 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.922 5.922 10 Si 0.950 3.050 11 H -0.272 1.272 12 H -0.276 1.276 13 H -0.283 1.283 14 C 0.506 3.494 15 O -0.554 6.554 16 C 0.487 3.513 17 O -0.467 6.467 18 N -0.640 5.640 19 C 0.087 3.913 20 C -0.100 4.100 21 C -0.151 4.151 22 C 0.081 3.919 23 N -0.482 5.482 24 C 0.082 3.918 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.021 0.979 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.430 0.570 34 H 0.125 0.875 35 H 0.158 0.842 36 H 0.191 0.809 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.303 -6.792 -3.864 10.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C 0.019 3.981 4 N -0.290 5.290 5 C 0.132 3.868 6 C -0.550 4.550 7 H 0.064 0.936 8 C -0.177 4.177 9 N -0.562 5.562 10 Si 0.776 3.224 11 H -0.196 1.196 12 H -0.201 1.201 13 H -0.209 1.209 14 C 0.289 3.711 15 O -0.435 6.435 16 C 0.268 3.732 17 O -0.337 6.337 18 N -0.290 5.290 19 C -0.010 4.010 20 C -0.128 4.128 21 C -0.171 4.171 22 C -0.076 4.076 23 N -0.191 5.191 24 C -0.078 4.078 25 H 0.123 0.877 26 H 0.137 0.863 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.270 0.730 34 H 0.143 0.857 35 H 0.175 0.825 36 H 0.208 0.792 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.593 -7.258 -3.357 11.027 hybrid contribution -0.419 1.680 -0.286 1.755 sum 7.174 -5.579 -3.643 9.790 Atomic orbital electron populations 1.24072 0.95019 1.03241 0.97699 1.23146 0.96740 0.97884 1.02442 1.20760 0.91893 0.96797 0.88692 1.48222 1.12240 1.52767 1.15805 1.19393 0.94955 0.92759 0.79691 1.21349 1.34901 0.96417 1.02372 0.93595 1.25503 0.95265 1.01964 0.94958 1.70026 1.41249 1.37747 1.07216 0.85631 0.78227 0.80637 0.77861 1.19640 1.20131 1.20919 1.19848 0.83580 0.80556 0.87159 1.90651 1.78862 1.43031 1.30996 1.20496 0.83415 0.81243 0.88022 1.91016 1.76210 1.34379 1.32052 1.42937 1.15035 1.53279 1.17746 1.18967 0.94417 0.95743 0.91869 1.21882 0.97292 0.97524 0.96081 1.22355 0.95851 1.01469 0.97443 1.23242 0.98016 0.87968 0.98382 1.67730 1.18220 1.28489 1.04656 1.22947 0.93228 0.96294 0.95318 0.87652 0.86287 0.87819 0.89024 0.89549 0.96088 0.94595 0.92832 0.73036 0.85746 0.82456 0.79233 0.79962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 14.32 67.78 0.97 -3.09 16 2 C -0.18 -5.51 9.81 25.65 0.25 -5.26 16 3 C 0.14 4.84 5.74 85.63 0.49 5.34 16 4 N -0.56 -23.47 2.46 -832.20 -2.05 -25.52 16 5 C 0.25 12.56 4.73 85.63 0.40 12.97 16 6 C -0.51 -27.52 7.72 25.60 0.20 -27.32 16 7 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 8 C 0.02 1.23 5.46 84.66 0.46 1.69 16 9 N -0.92 -53.28 13.29 21.45 0.28 -52.99 16 10 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 C 0.51 20.45 7.64 87.24 0.67 21.12 16 15 O -0.55 -21.62 16.20 -3.28 -0.05 -21.67 16 16 C 0.49 19.37 7.55 87.24 0.66 20.03 16 17 O -0.47 -22.05 9.68 -3.33 -0.03 -22.09 16 18 N -0.64 -19.90 5.33 -304.53 -1.62 -21.53 16 19 C 0.09 2.61 6.30 38.31 0.24 2.85 16 20 C -0.10 -3.24 8.81 22.60 0.20 -3.04 16 21 C -0.15 -3.86 10.10 22.34 0.23 -3.64 16 22 C 0.08 1.83 11.18 84.70 0.95 2.78 16 23 N -0.48 -12.40 10.35 -195.27 -2.02 -14.42 16 24 C 0.08 2.07 11.13 84.86 0.94 3.01 16 25 H 0.11 2.50 7.84 -2.91 -0.02 2.48 16 26 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 27 H 0.10 3.18 8.06 -2.91 -0.02 3.16 16 28 H 0.09 3.10 7.69 -2.39 -0.02 3.09 16 29 H 0.09 2.87 7.64 -2.38 -0.02 2.85 16 30 H 0.02 1.09 8.03 -2.39 -0.02 1.07 16 31 H 0.04 1.99 5.94 -2.39 -0.01 1.98 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.43 10.97 8.31 -92.71 -0.77 10.20 16 34 H 0.12 4.82 6.38 -2.91 -0.02 4.80 16 35 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.19 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -66.25 326.90 3.52 -62.73 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.33 Total: 22.37 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: 6.66 Total: 27.43 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -5.41 Total: -114.46 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.09 Total: -43.76 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -66.25 3.52 -62.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340615409.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.026 kcal (2) G-P(sol) polarization free energy of solvation -66.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds