Wall clock time and date at job start Tue Mar 31 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00398 * 2 1 4 4 H 1.48497 * 109.47259 * 270.00933 * 3 2 1 5 5 H 1.48502 * 109.46711 * 30.00612 * 3 2 1 6 6 H 1.48495 * 109.47047 * 150.00185 * 3 2 1 7 7 C 1.38955 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00062 * 359.97438 * 7 2 1 9 9 N 1.37105 * 119.99830 * 179.97438 * 7 2 1 10 10 C 1.34770 * 119.99625 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00718 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99722 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47093 * 173.04656 * 12 10 9 14 14 C 1.40046 * 110.99670 * 284.50725 * 13 12 10 15 15 C 1.39407 * 129.94125 * 76.15796 * 14 13 12 16 16 C 1.37915 * 120.19210 * 180.71632 * 15 14 13 17 17 C 1.38303 * 120.26200 * 0.03100 * 16 15 14 18 18 C 1.38298 * 119.88926 * 359.82042 * 17 16 15 19 19 C 1.37917 * 120.08007 * 0.04849 * 18 17 16 20 20 C 1.51580 * 131.56850 * 180.26020 * 19 18 17 21 21 C 1.48400 * 111.00519 * 164.49778 * 13 12 10 22 22 H 1.09005 * 110.83079 * 212.70587 * 21 13 12 23 23 C 1.50694 * 110.93856 * 336.28958 * 21 13 12 24 24 N 1.34773 * 120.00622 * 242.25184 * 23 21 13 25 25 O 1.21281 * 119.99776 * 62.25264 * 23 21 13 26 26 H 0.97004 * 120.00151 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99651 * 0.02562 * 9 7 2 28 28 H 1.08994 * 109.47190 * 53.04021 * 12 10 9 29 29 H 1.09004 * 109.47151 * 293.03916 * 12 10 9 30 30 H 1.07994 * 119.90202 * 0.70000 * 15 14 13 31 31 H 1.07996 * 119.86397 * 180.02562 * 16 15 14 32 32 H 1.08000 * 120.05603 * 179.86773 * 17 16 15 33 33 H 1.07995 * 119.96029 * 180.02562 * 18 17 16 34 34 H 1.08996 * 110.73681 * 282.36482 * 20 19 18 35 35 H 1.09004 * 110.73625 * 45.50443 * 20 19 18 36 36 H 0.97010 * 119.99674 * 359.97438 * 24 23 21 37 37 H 0.96999 * 120.00476 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4457 2.6526 0.7002 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0536 -2.3706 -0.0011 11 8 3.4472 -3.4211 -0.0011 12 6 5.5606 -2.3707 -0.0011 13 7 6.0503 -3.7455 0.1666 14 6 5.9087 -4.1702 1.4936 15 6 4.7698 -4.5790 2.1858 16 6 4.8590 -4.9471 3.5119 17 6 6.0780 -4.9129 4.1643 18 6 7.2129 -4.5115 3.4835 19 6 7.1297 -4.1449 2.1566 20 6 8.1850 -3.6766 1.1744 21 6 7.4862 -3.8465 -0.1941 22 1 7.7101 -4.8228 -0.6241 23 6 7.8834 -2.7410 -1.1381 24 7 8.3248 -3.0382 -2.3763 25 8 7.8058 -1.5838 -0.7835 26 1 -0.4850 0.8401 0.0004 27 1 3.8648 -0.3634 -0.0007 28 1 5.9240 -1.7528 0.8200 29 1 5.9240 -1.9685 -0.9468 30 1 3.8149 -4.6072 1.6822 31 1 3.9734 -5.2633 4.0430 32 1 6.1437 -5.1999 5.2034 33 1 8.1655 -4.4847 3.9917 34 1 8.4398 -2.6316 1.3507 35 1 9.0740 -4.3046 1.2346 36 1 8.3873 -3.9638 -2.6598 37 1 8.5808 -2.3266 -2.9838 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343078116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:51 Heat of formation + Delta-G solvation = -8.279879 kcal Electronic energy + Delta-G solvation = -23206.839507 eV Core-core repulsion = 19757.095639 eV Total energy + Delta-G solvation = -3449.743868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40450 -39.12042 -38.08032 -36.16987 -33.98303 -33.90333 -32.13074 -31.61394 -29.80831 -29.24144 -26.79793 -24.37830 -24.06365 -21.35834 -21.16798 -20.31946 -19.35127 -18.44852 -17.60018 -17.08681 -16.35396 -16.32836 -15.59202 -15.18773 -14.85782 -14.77631 -14.31763 -13.98939 -13.66518 -13.32860 -13.02550 -12.89477 -12.79383 -12.63442 -12.36204 -12.12818 -11.67603 -11.57501 -11.33060 -11.06917 -10.70422 -10.53440 -10.16983 -9.94178 -9.84358 -9.50252 -9.24873 -8.57344 -8.35959 -8.11412 -7.72543 -6.26999 -3.77544 1.48105 1.64583 2.19837 3.09514 3.13961 3.19530 3.20115 3.69509 3.80534 3.98287 4.15745 4.39195 4.61674 4.70465 4.87069 4.99027 5.15967 5.24157 5.30283 5.41953 5.61716 5.64604 5.70047 5.83071 5.91358 5.99452 6.03143 6.24898 6.52133 6.54818 6.63887 6.77582 6.95304 7.03278 7.05304 7.47539 7.62661 7.97920 8.18668 8.65234 8.99650 9.47701 9.89007 10.85985 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.006043 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.046602 B = 4632.721849 C = 5843.764931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.302 4.302 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.454 3.546 11 O -0.559 6.559 12 C 0.035 3.965 13 N -0.448 5.448 14 C 0.100 3.900 15 C -0.088 4.088 16 C -0.109 4.109 17 C -0.134 4.134 18 C -0.098 4.098 19 C -0.146 4.146 20 C -0.092 4.092 21 C 0.056 3.944 22 H 0.114 0.886 23 C 0.525 3.475 24 N -0.845 5.845 25 O -0.531 6.531 26 H 0.273 0.727 27 H 0.371 0.629 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.405 0.595 37 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.636 -7.586 1.274 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.160 4.160 3 Si 0.702 3.298 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.138 0.862 9 N -0.229 5.229 10 C 0.239 3.761 11 O -0.441 6.441 12 C -0.094 4.094 13 N -0.167 5.167 14 C 0.004 3.996 15 C -0.108 4.108 16 C -0.128 4.128 17 C -0.153 4.153 18 C -0.116 4.116 19 C -0.148 4.148 20 C -0.131 4.131 21 C -0.054 4.054 22 H 0.132 0.868 23 C 0.309 3.691 24 N -0.409 5.409 25 O -0.407 6.407 26 H 0.083 0.917 27 H 0.204 0.796 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.169 0.831 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.234 0.766 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 18.583 -7.761 1.264 20.178 hybrid contribution 1.167 1.723 -0.012 2.081 sum 19.750 -6.038 1.251 20.690 Atomic orbital electron populations 1.69618 1.05586 1.27434 1.49574 1.25008 0.95464 0.97904 0.97654 0.86719 0.79940 0.84139 0.78995 1.19595 1.20144 1.19387 1.19420 0.79136 0.96600 1.47924 0.86198 1.42194 1.07505 1.06166 1.67003 1.19592 0.87866 0.84628 0.83995 1.90470 1.69372 1.30708 1.53564 1.22416 0.95684 0.87360 1.03910 1.60106 1.13155 1.22518 1.20891 1.19408 0.93949 0.98493 0.87739 1.21201 0.99164 0.96732 0.93656 1.21041 0.97688 0.99811 0.94255 1.21013 0.92627 1.02013 0.99615 1.20218 0.98522 1.00343 0.92526 1.20834 0.95556 1.03673 0.94771 1.21560 0.97381 1.03074 0.91054 1.22876 0.88841 0.98561 0.95145 0.86769 1.20286 0.76106 0.89949 0.82750 1.43841 1.68884 1.12763 1.15382 1.90799 1.52580 1.21104 1.76238 0.91671 0.79643 0.91933 0.87570 0.83099 0.85672 0.86097 0.86555 0.88948 0.89325 0.76644 0.76508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.21 13.96 55.50 0.77 -25.44 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 20.33 27.74 -169.99 -4.71 15.62 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.87 6.52 56.52 0.37 -5.51 16 7 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 8 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 9 N -0.59 -14.91 5.09 -10.96 -0.06 -14.97 16 10 C 0.45 10.94 7.37 -10.99 -0.08 10.86 16 11 O -0.56 -14.98 13.15 5.55 0.07 -14.91 16 12 C 0.03 0.68 4.05 -4.98 -0.02 0.66 16 13 N -0.45 -7.80 4.64 -163.84 -0.76 -8.56 16 14 C 0.10 1.75 5.24 -83.40 -0.44 1.32 16 15 C -0.09 -1.62 9.24 -39.26 -0.36 -1.98 16 16 C -0.11 -1.65 10.02 -39.68 -0.40 -2.04 16 17 C -0.13 -1.74 10.06 -39.54 -0.40 -2.14 16 18 C -0.10 -1.26 10.03 -39.68 -0.40 -1.66 16 19 C -0.15 -2.12 6.23 -104.04 -0.65 -2.77 16 20 C -0.09 -1.11 6.45 -26.61 -0.17 -1.28 16 21 C 0.06 0.71 3.83 -67.20 -0.26 0.46 16 22 H 0.11 1.11 8.00 -51.93 -0.42 0.70 16 23 C 0.53 6.50 5.96 -10.99 -0.07 6.44 16 24 N -0.85 -6.64 8.87 31.22 0.28 -6.36 16 25 O -0.53 -8.50 14.40 5.56 0.08 -8.42 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.37 8.59 5.76 -40.82 -0.24 8.36 16 28 H 0.06 1.23 7.84 -51.93 -0.41 0.83 16 29 H 0.11 2.00 5.20 -51.93 -0.27 1.73 16 30 H 0.15 3.24 5.85 -52.49 -0.31 2.93 16 31 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.09 1.20 7.43 -51.93 -0.39 0.81 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.40 1.97 8.72 -40.82 -0.36 1.62 16 37 H 0.40 2.71 8.93 -40.82 -0.36 2.35 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -35.26 308.46 -7.15 -42.41 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -3.99 Total: 15.93 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -3.48 Total: 0.05 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.24 Total: -55.32 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.15 Total: -23.32 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.71 Total: 15.62 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.26 -7.15 -42.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343078116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.130 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds