Wall clock time and date at job start Tue Mar 31 2020 02:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 119.99777 * 2 1 4 4 H 1.48503 * 109.46906 * 239.99701 * 3 2 1 5 5 H 1.48500 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46880 * 119.99596 * 3 2 1 7 7 C 1.38942 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00055 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.34785 * 119.99938 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99458 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99885 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46754 * 179.97438 * 12 10 9 14 14 C 1.34784 * 119.99863 * 179.97438 * 13 12 10 15 15 O 1.21551 * 119.99677 * 0.02562 * 14 13 12 16 16 C 1.47843 * 120.00009 * 179.97438 * 14 13 12 17 17 C 1.40025 * 120.55950 * 354.16472 * 16 14 13 18 18 C 1.38353 * 118.29167 * 179.97438 * 17 16 14 19 19 C 1.38353 * 119.29869 * 359.97438 * 18 17 16 20 20 N 1.31935 * 121.08161 * 359.74417 * 19 18 17 21 21 C 1.31690 * 121.87425 * 0.52992 * 20 19 18 22 22 C 1.50706 * 119.71135 * 179.75198 * 21 20 19 23 23 C 1.53003 * 117.49774 * 283.17098 * 22 21 20 24 24 C 1.52997 * 60.03179 * 107.48078 * 23 22 21 25 25 H 0.97001 * 120.00310 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00539 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47183 * 60.00205 * 12 10 9 28 28 H 1.08996 * 109.47143 * 299.99383 * 12 10 9 29 29 H 0.96996 * 120.00332 * 359.97438 * 13 12 10 30 30 H 1.08001 * 120.85372 * 359.95526 * 17 16 14 31 31 H 1.07991 * 120.35162 * 180.02562 * 18 17 16 32 32 H 1.07995 * 119.46136 * 180.02562 * 19 18 17 33 33 H 1.08999 * 115.56045 * 137.49101 * 22 21 20 34 34 H 1.08998 * 117.50108 * 214.98595 * 23 22 21 35 35 H 1.08999 * 117.49479 * 359.97438 * 23 22 21 36 36 H 1.08999 * 117.50308 * 107.49689 * 24 23 22 37 37 H 1.09001 * 117.49851 * 252.52360 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5577 0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1959 -5.9763 -0.0005 14 6 1.7467 -7.2471 -0.0006 15 8 0.5516 -7.4692 -0.0007 16 6 2.7074 -8.3708 -0.0017 17 6 4.0817 -8.1324 -0.1252 18 6 4.9387 -9.2185 -0.1201 19 6 4.4157 -10.4931 0.0063 20 7 3.1163 -10.6872 0.1266 21 6 2.2602 -9.6865 0.1220 22 6 0.7852 -9.9647 0.2572 23 6 0.0498 -10.4921 -0.9765 24 6 0.3337 -11.4262 0.2015 25 1 -0.4851 0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0002 27 1 0.6176 -4.9204 -0.8902 28 1 0.6169 -4.9209 0.8897 29 1 3.1495 -5.7991 -0.0008 30 1 4.4628 -7.1265 -0.2223 31 1 6.0047 -9.0728 -0.2129 32 1 5.0823 -11.3427 0.0110 33 1 0.2390 -9.2937 0.9200 34 1 -0.9802 -10.1682 -1.1252 35 1 0.6328 -10.6375 -1.8860 36 1 -0.5096 -11.7168 0.8280 37 1 1.1036 -12.1860 0.0672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343541406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:56 Heat of formation + Delta-G solvation = -9.841798 kcal Electronic energy + Delta-G solvation = -21786.920418 eV Core-core repulsion = 18337.108820 eV Total energy + Delta-G solvation = -3449.811598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91085 -39.14898 -38.05651 -36.90160 -34.54889 -33.81653 -32.67520 -31.44811 -31.30402 -27.88338 -25.05554 -24.58348 -23.96157 -22.27219 -20.97104 -20.51819 -19.65948 -18.30470 -17.72638 -17.08287 -16.42375 -15.84220 -15.47488 -15.19063 -15.07997 -14.75914 -14.44964 -14.30326 -14.05040 -13.70322 -13.52605 -13.12253 -12.72261 -12.23603 -12.04161 -11.85136 -11.66641 -11.49277 -11.13957 -10.80175 -10.54096 -10.49455 -10.35001 -10.03907 -10.00193 -9.67171 -9.40005 -9.11464 -8.80839 -8.69517 -8.14909 -6.55569 -3.97945 0.51737 0.98766 2.88546 3.10594 3.16828 3.19479 3.26011 3.57893 3.69131 3.93472 4.05287 4.07676 4.47451 4.57537 4.65156 4.80673 4.89307 5.01463 5.10169 5.12808 5.14051 5.27486 5.48833 5.68639 5.81267 5.82453 5.88089 5.89696 5.90076 6.00871 6.17013 6.24806 6.40846 6.57915 7.41751 7.64620 7.75232 7.86867 8.30807 8.40489 8.99915 9.34090 9.81671 10.61104 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.003100 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.389401 B = 9031.403366 C = 9888.471696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.105 0.895 9 N -0.547 5.547 10 C 0.426 3.574 11 O -0.599 6.599 12 C 0.110 3.890 13 N -0.702 5.702 14 C 0.559 3.441 15 O -0.531 6.531 16 C -0.177 4.177 17 C -0.039 4.039 18 C -0.186 4.186 19 C 0.123 3.877 20 N -0.488 5.488 21 C 0.216 3.784 22 C -0.105 4.105 23 C -0.151 4.151 24 C -0.170 4.170 25 H 0.275 0.725 26 H 0.396 0.604 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.409 0.591 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 -18.364 -0.354 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.212 3.788 11 O -0.486 6.486 12 C -0.018 4.018 13 N -0.356 5.356 14 C 0.345 3.655 15 O -0.409 6.409 16 C -0.182 4.182 17 C -0.065 4.065 18 C -0.206 4.206 19 C -0.035 4.035 20 N -0.196 5.196 21 C 0.077 3.923 22 C -0.123 4.123 23 C -0.189 4.189 24 C -0.207 4.207 25 H 0.085 0.915 26 H 0.230 0.770 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.248 0.752 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.623 -19.136 -0.263 19.477 hybrid contribution 0.771 1.990 -0.108 2.137 sum 4.394 -17.146 -0.372 17.704 Atomic orbital electron populations 1.69603 1.06025 1.28720 1.49023 1.25329 0.95666 0.99960 0.96662 0.85870 0.78797 0.80110 0.79181 1.19749 1.20811 1.19741 1.19684 0.93452 0.81992 1.48509 0.87699 1.41786 1.09502 1.04454 1.62375 1.19717 0.88285 0.84983 0.85817 1.90488 1.13719 1.86817 1.57590 1.20979 0.91762 0.85546 1.03475 1.45620 1.11671 1.04499 1.73795 1.17921 0.87993 0.82372 0.77241 1.90743 1.15769 1.84384 1.50018 1.20753 0.94312 0.95069 1.08056 1.21924 0.91991 1.00507 0.92086 1.22103 1.01494 0.93435 1.03571 1.22961 0.91435 0.96696 0.92380 1.67510 1.03385 1.34902 1.13819 1.20535 0.94843 0.86986 0.89898 1.21056 0.89093 0.97996 1.04163 1.22823 1.01066 1.02709 0.92256 1.23010 1.03081 0.93032 1.01597 0.91467 0.76990 0.89580 0.89588 0.75227 0.83816 0.84034 0.82261 0.84441 0.88202 0.89362 0.88771 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.55 13.05 55.50 0.72 -22.83 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.26 29.55 -169.99 -5.02 15.23 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -8.21 9.68 -14.94 -0.14 -8.36 16 8 H 0.11 2.91 7.16 -52.48 -0.38 2.54 16 9 N -0.55 -13.29 5.29 -10.96 -0.06 -13.35 16 10 C 0.43 9.54 7.85 -10.98 -0.09 9.45 16 11 O -0.60 -14.93 15.24 5.55 0.08 -14.84 16 12 C 0.11 1.96 6.15 -5.20 -0.03 1.93 16 13 N -0.70 -11.47 5.48 -62.44 -0.34 -11.82 16 14 C 0.56 8.88 7.74 -12.33 -0.10 8.79 16 15 O -0.53 -9.36 13.57 5.32 0.07 -9.28 16 16 C -0.18 -2.43 5.89 -104.82 -0.62 -3.05 16 17 C -0.04 -0.44 9.63 -38.87 -0.37 -0.81 16 18 C -0.19 -1.69 10.10 -39.50 -0.40 -2.09 16 19 C 0.12 1.17 11.17 -17.46 -0.20 0.98 16 20 N -0.49 -5.98 9.32 -9.14 -0.09 -6.07 16 21 C 0.22 2.93 6.49 -82.18 -0.53 2.39 16 22 C -0.10 -1.37 4.36 -91.73 -0.40 -1.77 16 23 C -0.15 -1.77 10.23 -26.73 -0.27 -2.04 16 24 C -0.17 -1.85 10.03 -26.69 -0.27 -2.11 16 25 H 0.28 6.87 8.31 -40.82 -0.34 6.53 16 26 H 0.40 9.26 7.90 -40.82 -0.32 8.93 16 27 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.41 6.50 5.58 -40.82 -0.23 6.27 16 30 H 0.14 1.46 6.56 -52.49 -0.34 1.12 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 32 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.14 1.98 6.54 -51.93 -0.34 1.64 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 1.13 7.57 -51.93 -0.39 0.74 16 LS Contribution 324.08 15.07 4.88 4.88 Total: -1.00 -30.73 324.08 -7.36 -38.09 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -4.10 Total: 16.08 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -3.51 Total: 3.90 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.24 Total: -54.06 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.16 Total: -24.13 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.73 -7.36 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343541406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.247 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds