Wall clock time and date at job start Tue Mar 31 2020 02:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 119.99777 * 2 1 4 4 H 1.48503 * 109.46906 * 239.99701 * 3 2 1 5 5 H 1.48500 * 109.46880 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46880 * 119.99596 * 3 2 1 7 7 C 1.38942 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00055 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.34785 * 119.99938 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99458 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99885 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46754 * 179.97438 * 12 10 9 14 14 C 1.34784 * 119.99863 * 179.97438 * 13 12 10 15 15 O 1.21551 * 119.99677 * 0.02562 * 14 13 12 16 16 C 1.47843 * 120.00009 * 179.97438 * 14 13 12 17 17 C 1.40025 * 120.55950 * 354.16472 * 16 14 13 18 18 C 1.38353 * 118.29167 * 179.97438 * 17 16 14 19 19 C 1.38353 * 119.29869 * 359.97438 * 18 17 16 20 20 N 1.31935 * 121.08161 * 359.74417 * 19 18 17 21 21 C 1.31690 * 121.87425 * 0.52992 * 20 19 18 22 22 C 1.50706 * 119.71135 * 179.75198 * 21 20 19 23 23 C 1.53003 * 117.49774 * 283.17098 * 22 21 20 24 24 C 1.52997 * 60.03179 * 107.48078 * 23 22 21 25 25 H 0.97001 * 120.00310 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00539 * 0.02562 * 9 7 2 27 27 H 1.08993 * 109.47183 * 60.00205 * 12 10 9 28 28 H 1.08996 * 109.47143 * 299.99383 * 12 10 9 29 29 H 0.96996 * 120.00332 * 359.97438 * 13 12 10 30 30 H 1.08001 * 120.85372 * 359.95526 * 17 16 14 31 31 H 1.07991 * 120.35162 * 180.02562 * 18 17 16 32 32 H 1.07995 * 119.46136 * 180.02562 * 19 18 17 33 33 H 1.08999 * 115.56045 * 137.49101 * 22 21 20 34 34 H 1.08998 * 117.50108 * 214.98595 * 23 22 21 35 35 H 1.08999 * 117.49479 * 359.97438 * 23 22 21 36 36 H 1.08999 * 117.50308 * 107.49689 * 24 23 22 37 37 H 1.09001 * 117.49851 * 252.52360 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5577 0.0001 12 6 1.2438 -4.8629 0.0000 13 7 2.1959 -5.9763 -0.0005 14 6 1.7467 -7.2471 -0.0006 15 8 0.5516 -7.4692 -0.0007 16 6 2.7074 -8.3708 -0.0017 17 6 4.0817 -8.1324 -0.1252 18 6 4.9387 -9.2185 -0.1201 19 6 4.4157 -10.4931 0.0063 20 7 3.1163 -10.6872 0.1266 21 6 2.2602 -9.6865 0.1220 22 6 0.7852 -9.9647 0.2572 23 6 0.0498 -10.4921 -0.9765 24 6 0.3337 -11.4262 0.2015 25 1 -0.4851 0.8400 -0.0004 26 1 0.3534 -2.3906 -0.0002 27 1 0.6176 -4.9204 -0.8902 28 1 0.6169 -4.9209 0.8897 29 1 3.1495 -5.7991 -0.0008 30 1 4.4628 -7.1265 -0.2223 31 1 6.0047 -9.0728 -0.2129 32 1 5.0823 -11.3427 0.0110 33 1 0.2390 -9.2937 0.9200 34 1 -0.9802 -10.1682 -1.1252 35 1 0.6328 -10.6375 -1.8860 36 1 -0.5096 -11.7168 0.8280 37 1 1.1036 -12.1860 0.0672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343541406.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:56 Heat of formation + Delta-G solvation = -30.856364 kcal Electronic energy + Delta-G solvation = -21787.831678 eV Core-core repulsion = 18337.108820 eV Total energy + Delta-G solvation = -3450.722858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.90612 -40.57452 -39.62343 -37.81491 -36.26838 -35.38775 -33.68053 -33.34080 -32.20594 -29.40243 -26.70905 -25.45068 -25.19886 -23.17779 -21.95796 -21.73898 -21.31410 -20.12074 -19.11461 -18.00911 -17.46742 -17.40068 -16.82855 -16.54050 -16.39060 -16.13644 -15.83967 -15.60450 -15.29199 -15.09787 -14.65526 -14.26117 -13.82214 -13.61981 -13.56228 -13.54786 -12.91068 -12.82281 -12.47983 -12.35599 -12.14389 -11.71670 -11.57302 -11.44431 -11.01861 -10.95515 -10.58951 -10.40958 -10.28162 -10.10705 -9.85650 -8.51994 -6.02453 -0.39943 0.14239 1.37312 1.42419 1.53155 1.76892 1.89923 1.91267 2.29941 2.66084 3.04209 3.08789 3.15284 3.17912 3.53733 3.69661 3.82697 4.00136 4.11307 4.20002 4.22183 4.25441 4.37986 4.40826 4.50298 4.67493 4.79431 4.97851 5.03798 5.04874 5.14093 5.27050 5.35764 5.37476 5.59891 5.90145 6.38916 6.47442 6.86894 7.01714 7.05281 7.42451 7.92322 8.64600 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.003100 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.389401 B = 9031.403366 C = 9888.471696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.123 3.877 13 N -0.703 5.703 14 C 0.560 3.440 15 O -0.553 6.553 16 C -0.201 4.201 17 C -0.044 4.044 18 C -0.174 4.174 19 C 0.127 3.873 20 N -0.502 5.502 21 C 0.203 3.797 22 C -0.125 4.125 23 C -0.152 4.152 24 C -0.150 4.150 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.411 0.589 30 H 0.151 0.849 31 H 0.179 0.821 32 H 0.199 0.801 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -19.389 -0.441 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.219 3.781 11 O -0.512 6.512 12 C -0.005 4.005 13 N -0.358 5.358 14 C 0.348 3.652 15 O -0.433 6.433 16 C -0.206 4.206 17 C -0.070 4.070 18 C -0.193 4.193 19 C -0.030 4.030 20 N -0.211 5.211 21 C 0.065 3.935 22 C -0.143 4.143 23 C -0.190 4.190 24 C -0.187 4.187 25 H 0.090 0.910 26 H 0.233 0.767 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.251 0.749 30 H 0.168 0.832 31 H 0.196 0.804 32 H 0.216 0.784 33 H 0.136 0.864 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.995 -20.181 -0.350 20.793 hybrid contribution 0.419 2.185 -0.079 2.227 sum 5.414 -17.996 -0.429 18.798 Atomic orbital electron populations 1.69671 1.07027 1.29744 1.49130 1.26125 0.96517 1.02686 0.95707 0.84937 0.77740 0.76243 0.79138 1.19439 1.19675 1.19448 1.19714 0.93016 0.83527 1.50544 0.89469 1.41834 1.09606 1.04586 1.63276 1.20388 0.88135 0.85883 0.83694 1.90463 1.15106 1.87522 1.58127 1.20798 0.91562 0.83630 1.04493 1.45595 1.11451 1.04353 1.74350 1.18284 0.88203 0.82492 0.76262 1.90726 1.16886 1.84666 1.51017 1.20628 0.94965 0.94263 1.10769 1.22124 0.91267 1.01782 0.91872 1.22506 1.02987 0.92393 1.01434 1.23693 0.90895 0.98316 0.90146 1.67558 1.04551 1.34454 1.14501 1.20577 0.95198 0.87230 0.90504 1.20993 0.89399 0.99179 1.04771 1.22844 1.00987 1.03021 0.92135 1.23042 1.03204 0.91756 1.00719 0.91034 0.76678 0.88512 0.88522 0.74942 0.83172 0.80366 0.78409 0.86434 0.87961 0.89553 0.87275 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.24 13.05 21.66 0.28 -47.95 16 2 C -0.01 -0.49 5.50 84.92 0.47 -0.02 16 3 Si 1.00 41.21 29.55 68.60 2.03 43.24 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.34 -18.42 9.68 84.04 0.81 -17.61 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.59 5.29 -306.98 -1.62 -29.22 16 10 C 0.43 19.56 7.85 87.65 0.69 20.24 16 11 O -0.62 -31.45 15.24 -3.06 -0.05 -31.50 16 12 C 0.12 4.40 6.15 85.63 0.53 4.93 16 13 N -0.70 -23.04 5.48 -469.72 -2.57 -25.61 16 14 C 0.56 17.97 7.74 86.78 0.67 18.64 16 15 O -0.55 -19.91 13.57 -3.88 -0.05 -19.97 16 16 C -0.20 -5.46 5.89 -19.99 -0.12 -5.58 16 17 C -0.04 -0.93 9.63 22.73 0.22 -0.71 16 18 C -0.17 -2.60 10.10 22.32 0.23 -2.37 16 19 C 0.13 2.01 11.17 84.70 0.95 2.95 16 20 N -0.50 -11.42 9.32 -182.84 -1.70 -13.12 16 21 C 0.20 5.40 6.49 42.89 0.28 5.68 16 22 C -0.12 -3.30 4.36 -11.51 -0.05 -3.35 16 23 C -0.15 -3.55 10.23 30.59 0.31 -3.23 16 24 C -0.15 -3.13 10.03 30.62 0.31 -2.83 16 25 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 26 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 27 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 28 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 29 H 0.41 13.07 5.58 -92.71 -0.52 12.55 16 30 H 0.15 2.88 6.56 -2.91 -0.02 2.86 16 31 H 0.18 1.34 8.06 -2.92 -0.02 1.32 16 32 H 0.20 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.12 3.54 6.54 -2.39 -0.02 3.52 16 34 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.11 2.16 7.57 -2.39 -0.02 2.15 16 Total: -1.00 -66.55 324.08 1.48 -65.07 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: -0.12 Total: 42.32 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 5.29 Total: 16.74 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -5.62 Total: -115.91 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.10 Total: -51.47 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -66.55 1.48 -65.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343541406.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.216 kcal (2) G-P(sol) polarization free energy of solvation -66.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds