Wall clock time and date at job start Tue Mar 31 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99555 * 2 1 4 4 H 1.48509 * 109.47069 * 270.00190 * 3 2 1 5 5 H 1.48502 * 109.47295 * 29.99653 * 3 2 1 6 6 H 1.48499 * 109.47159 * 150.00276 * 3 2 1 7 7 C 1.38947 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00123 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21513 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.48173 * 119.99719 * 180.27160 * 14 13 12 17 17 C 1.39306 * 119.71974 * 179.44508 * 16 14 13 18 18 C 1.38594 * 119.05828 * 179.77595 * 17 16 14 19 19 C 1.38623 * 118.48816 * 0.49425 * 18 17 16 20 20 C 1.50693 * 120.32474 * 179.72851 * 19 18 17 21 21 C 1.53007 * 117.50117 * 188.64138 * 20 19 18 22 22 C 1.52997 * 60.00254 * 252.51325 * 21 20 19 23 23 C 1.38556 * 119.35026 * 359.75075 * 19 18 17 24 24 N 1.31522 * 120.90720 * 359.97438 * 23 19 18 25 25 H 0.96990 * 120.00553 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 28 28 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 29 29 H 0.97001 * 120.00074 * 359.97438 * 13 12 10 30 30 H 1.08000 * 120.47065 * 0.02562 * 17 16 14 31 31 H 1.08001 * 120.75652 * 180.24986 * 18 17 16 32 32 H 1.08998 * 115.55033 * 334.35573 * 20 19 18 33 33 H 1.08998 * 117.49515 * 0.02562 * 21 20 19 34 34 H 1.09001 * 117.49712 * 145.01847 * 21 20 19 35 35 H 1.09008 * 117.49875 * 252.51273 * 22 21 20 36 36 H 1.08996 * 117.50560 * 107.48910 * 22 21 20 37 37 H 1.08003 * 119.55020 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0465 -1.4002 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3703 0.0000 11 8 3.4476 -3.4207 0.0000 12 6 5.5609 -2.3702 0.0000 13 7 6.0494 -3.7513 -0.0006 14 6 7.3745 -3.9975 -0.0002 15 8 8.1640 -3.0738 0.0002 16 6 7.8684 -5.3944 -0.0069 17 6 9.2392 -5.6422 -0.0182 18 6 9.6862 -6.9541 -0.0196 19 6 8.7461 -7.9729 -0.0202 20 6 9.1861 -9.4141 -0.0279 21 6 8.1083 -10.4808 -0.2321 22 6 8.7474 -10.2930 1.1452 23 6 7.3980 -7.6530 -0.0142 24 7 7.0012 -6.3991 -0.0073 25 1 -0.4850 0.8399 0.0004 26 1 3.8649 -0.3631 -0.0004 27 1 5.9242 -1.8563 0.8899 28 1 5.9242 -1.8564 -0.8900 29 1 5.4191 -4.4887 -0.0006 30 1 9.9437 -4.8236 -0.0216 31 1 10.7428 -7.1776 -0.0242 32 1 10.1696 -9.6031 -0.4581 33 1 7.0811 -10.1400 -0.3613 34 1 8.3826 -11.3717 -0.7971 35 1 9.4422 -11.0605 1.4865 36 1 8.1407 -9.8287 1.9226 37 1 6.6628 -8.4442 -0.0150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344146061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:11 Heat of formation + Delta-G solvation = -6.669355 kcal Electronic energy + Delta-G solvation = -21283.578425 eV Core-core repulsion = 17833.904395 eV Total energy + Delta-G solvation = -3449.674030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90603 -39.37276 -38.27125 -37.32446 -34.58137 -33.80858 -32.70896 -31.78718 -31.30957 -28.09149 -25.38571 -24.22782 -24.00539 -22.72087 -21.38100 -20.49765 -19.65901 -18.85138 -17.92369 -17.33074 -16.14185 -15.84083 -15.52834 -15.28372 -15.17325 -14.96289 -14.77493 -14.41164 -14.12044 -13.52141 -13.45690 -13.11949 -12.96820 -12.46510 -12.16326 -12.15229 -12.10395 -11.90766 -11.43081 -11.22076 -10.86963 -10.62863 -10.29802 -10.04329 -10.03356 -9.67765 -9.64418 -9.15648 -8.84349 -8.74578 -8.28334 -6.38627 -3.91115 0.41544 0.98895 2.64731 3.00984 3.05441 3.12075 3.16682 3.38656 3.58259 3.79308 3.91965 4.05286 4.17576 4.37070 4.48174 4.53210 4.57786 4.62019 4.74941 4.97160 5.09840 5.15792 5.20182 5.40930 5.50663 5.56156 5.65204 5.67074 5.76539 5.80496 5.81131 5.89614 6.31847 6.53803 7.43454 7.49539 7.81724 8.02175 8.29932 8.47919 8.84003 9.31859 9.65822 10.73622 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.002793 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.328991 B =10021.253244 C =10784.029247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.309 4.309 8 H 0.122 0.878 9 N -0.577 5.577 10 C 0.438 3.562 11 O -0.574 6.574 12 C 0.103 3.897 13 N -0.685 5.685 14 C 0.568 3.432 15 O -0.544 6.544 16 C 0.079 3.921 17 C -0.107 4.107 18 C -0.079 4.079 19 C -0.085 4.085 20 C -0.120 4.120 21 C -0.174 4.174 22 C -0.166 4.166 23 C 0.098 3.902 24 N -0.447 5.447 25 H 0.275 0.725 26 H 0.374 0.626 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.423 0.577 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.716 -15.881 0.260 26.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.224 3.776 11 O -0.458 6.458 12 C -0.024 4.024 13 N -0.339 5.339 14 C 0.352 3.648 15 O -0.422 6.422 16 C -0.059 4.059 17 C -0.128 4.128 18 C -0.105 4.105 19 C -0.088 4.088 20 C -0.139 4.139 21 C -0.211 4.211 22 C -0.203 4.203 23 C -0.062 4.062 24 N -0.157 5.157 25 H 0.086 0.914 26 H 0.207 0.793 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.263 0.737 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.135 0.865 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 19.687 -15.532 0.264 25.078 hybrid contribution 1.142 0.869 -0.010 1.435 sum 20.828 -14.663 0.255 25.473 Atomic orbital electron populations 1.69615 1.05700 1.27781 1.48305 1.25063 0.95534 0.98149 0.97197 0.86670 0.79915 0.83780 0.79115 1.19408 1.20003 1.19222 1.19447 0.78942 0.96819 1.48551 0.86054 1.42114 1.07693 1.06074 1.65623 1.19605 0.87974 0.84949 0.85081 1.90562 1.69094 1.30831 1.55265 1.21061 0.94078 0.83729 1.03564 1.45574 1.06888 1.09656 1.71754 1.17818 0.82616 0.87023 0.77325 1.90763 1.55757 1.44337 1.51312 1.21163 0.90764 0.93179 1.00829 1.22114 0.95895 0.97903 0.96888 1.21395 1.00283 0.91518 0.97286 1.20365 0.94615 0.94711 0.99079 1.20973 1.00103 0.87861 1.04966 1.23112 0.98168 0.99988 0.99798 1.23075 1.03661 1.01812 0.91779 1.22718 0.93960 0.93173 0.96367 1.67651 1.38745 0.99969 1.09350 0.91408 0.79257 0.89408 0.89401 0.73656 0.83217 0.84072 0.86460 0.87958 0.88016 0.88120 0.88289 0.82130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.20 13.96 55.50 0.77 -24.43 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 3 Si 0.88 19.16 27.74 -169.99 -4.71 14.45 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 7 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.58 -13.65 5.09 -10.97 -0.06 -13.70 16 10 C 0.44 9.93 7.85 -10.99 -0.09 9.84 16 11 O -0.57 -15.03 15.24 5.55 0.08 -14.94 16 12 C 0.10 1.86 6.15 -5.19 -0.03 1.83 16 13 N -0.69 -12.13 5.52 -62.33 -0.34 -12.48 16 14 C 0.57 9.50 7.81 -12.18 -0.10 9.40 16 15 O -0.54 -9.91 16.32 5.35 0.09 -9.83 16 16 C 0.08 1.12 6.75 -83.01 -0.56 0.56 16 17 C -0.11 -1.21 9.63 -39.05 -0.38 -1.59 16 18 C -0.08 -0.69 9.88 -39.31 -0.39 -1.08 16 19 C -0.09 -0.75 5.63 -104.37 -0.59 -1.34 16 20 C -0.12 -0.75 6.06 -91.77 -0.56 -1.31 16 21 C -0.17 -0.95 9.87 -26.73 -0.26 -1.22 16 22 C -0.17 -0.92 10.17 -26.73 -0.27 -1.19 16 23 C 0.10 1.05 10.47 -17.57 -0.18 0.86 16 24 N -0.45 -6.21 9.54 -9.80 -0.09 -6.31 16 25 H 0.28 7.30 8.31 -40.82 -0.34 6.97 16 26 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 27 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.42 7.86 6.77 -40.82 -0.28 7.58 16 30 H 0.15 1.57 7.64 -52.49 -0.40 1.17 16 31 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.57 6.20 -51.93 -0.32 0.25 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.16 1.37 6.03 -52.48 -0.32 1.05 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -33.24 325.08 -7.08 -40.32 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -4.07 Total: 14.92 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -3.65 Total: 7.10 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.28 Total: -56.91 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: 0.17 Total: -24.77 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.24 -7.08 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344146061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.649 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds