Wall clock time and date at job start Tue Mar 31 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99555 * 2 1 4 4 H 1.48509 * 109.47069 * 270.00190 * 3 2 1 5 5 H 1.48502 * 109.47295 * 29.99653 * 3 2 1 6 6 H 1.48499 * 109.47159 * 150.00276 * 3 2 1 7 7 C 1.38947 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99788 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99931 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00123 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99977 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47264 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00199 * 180.02562 * 13 12 10 15 15 O 1.21513 * 119.99898 * 359.97438 * 14 13 12 16 16 C 1.48173 * 119.99719 * 180.27160 * 14 13 12 17 17 C 1.39306 * 119.71974 * 179.44508 * 16 14 13 18 18 C 1.38594 * 119.05828 * 179.77595 * 17 16 14 19 19 C 1.38623 * 118.48816 * 0.49425 * 18 17 16 20 20 C 1.50693 * 120.32474 * 179.72851 * 19 18 17 21 21 C 1.53007 * 117.50117 * 188.64138 * 20 19 18 22 22 C 1.52997 * 60.00254 * 252.51325 * 21 20 19 23 23 C 1.38556 * 119.35026 * 359.75075 * 19 18 17 24 24 N 1.31522 * 120.90720 * 359.97438 * 23 19 18 25 25 H 0.96990 * 120.00553 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00482 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47477 * 59.99807 * 12 10 9 28 28 H 1.08997 * 109.47150 * 299.99702 * 12 10 9 29 29 H 0.97001 * 120.00074 * 359.97438 * 13 12 10 30 30 H 1.08000 * 120.47065 * 0.02562 * 17 16 14 31 31 H 1.08001 * 120.75652 * 180.24986 * 18 17 16 32 32 H 1.08998 * 115.55033 * 334.35573 * 20 19 18 33 33 H 1.08998 * 117.49515 * 0.02562 * 21 20 19 34 34 H 1.09001 * 117.49712 * 145.01847 * 21 20 19 35 35 H 1.09008 * 117.49875 * 252.51273 * 22 21 20 36 36 H 1.08996 * 117.50560 * 107.48910 * 22 21 20 37 37 H 1.08003 * 119.55020 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0465 -1.4002 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4690 -2.1386 0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3703 0.0000 11 8 3.4476 -3.4207 0.0000 12 6 5.5609 -2.3702 0.0000 13 7 6.0494 -3.7513 -0.0006 14 6 7.3745 -3.9975 -0.0002 15 8 8.1640 -3.0738 0.0002 16 6 7.8684 -5.3944 -0.0069 17 6 9.2392 -5.6422 -0.0182 18 6 9.6862 -6.9541 -0.0196 19 6 8.7461 -7.9729 -0.0202 20 6 9.1861 -9.4141 -0.0279 21 6 8.1083 -10.4808 -0.2321 22 6 8.7474 -10.2930 1.1452 23 6 7.3980 -7.6530 -0.0142 24 7 7.0012 -6.3991 -0.0073 25 1 -0.4850 0.8399 0.0004 26 1 3.8649 -0.3631 -0.0004 27 1 5.9242 -1.8563 0.8899 28 1 5.9242 -1.8564 -0.8900 29 1 5.4191 -4.4887 -0.0006 30 1 9.9437 -4.8236 -0.0216 31 1 10.7428 -7.1776 -0.0242 32 1 10.1696 -9.6031 -0.4581 33 1 7.0811 -10.1400 -0.3613 34 1 8.3826 -11.3717 -0.7971 35 1 9.4422 -11.0605 1.4865 36 1 8.1407 -9.8287 1.9226 37 1 6.6628 -8.4442 -0.0150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344146061.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:11 Heat of formation + Delta-G solvation = -31.496275 kcal Electronic energy + Delta-G solvation = -21284.655001 eV Core-core repulsion = 17833.904395 eV Total energy + Delta-G solvation = -3450.750607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.84644 -40.76235 -39.86846 -37.95753 -36.34330 -35.46161 -33.86420 -33.54469 -32.19970 -29.60555 -26.78561 -25.49165 -24.97888 -23.14631 -22.25140 -21.50734 -21.47304 -20.63419 -19.36613 -18.17057 -17.46754 -17.15032 -16.91917 -16.70133 -16.34043 -16.03429 -15.84819 -15.66677 -15.34852 -14.92464 -14.69286 -14.41265 -14.14717 -14.00733 -13.72164 -13.64535 -12.97700 -12.73968 -12.45900 -12.33793 -12.03559 -12.00709 -11.59808 -11.53762 -11.28161 -10.82090 -10.70502 -10.55147 -10.37213 -10.29094 -9.82641 -8.46598 -6.09071 -0.47752 0.20152 1.30427 1.33374 1.43661 1.56018 1.77005 1.87089 2.19956 2.66486 2.80291 3.04242 3.08941 3.09896 3.52370 3.69762 3.85658 3.86827 3.98560 4.01109 4.12625 4.28275 4.33130 4.35302 4.36204 4.68672 4.85475 4.94484 5.04020 5.07777 5.14670 5.27124 5.28106 5.46934 5.54608 5.86159 6.29181 6.47194 6.71802 6.76452 6.99707 7.26795 7.76318 8.69965 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032998 B = 0.002793 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.328991 B =10021.253244 C =10784.029247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.961 3.039 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.232 1.232 7 C -0.333 4.333 8 H 0.062 0.938 9 N -0.576 5.576 10 C 0.443 3.557 11 O -0.614 6.614 12 C 0.115 3.885 13 N -0.695 5.695 14 C 0.570 3.430 15 O -0.562 6.562 16 C 0.045 3.955 17 C -0.105 4.105 18 C -0.072 4.072 19 C -0.072 4.072 20 C -0.126 4.126 21 C -0.175 4.175 22 C -0.163 4.163 23 C 0.084 3.916 24 N -0.478 5.478 25 H 0.282 0.718 26 H 0.393 0.607 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.417 0.583 30 H 0.157 0.843 31 H 0.180 0.820 32 H 0.139 0.861 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.381 -15.933 0.244 29.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.208 4.208 3 Si 0.780 3.220 4 H -0.180 1.180 5 H -0.197 1.197 6 H -0.155 1.155 7 C -0.462 4.462 8 H 0.080 0.920 9 N -0.216 5.216 10 C 0.230 3.770 11 O -0.500 6.500 12 C -0.013 4.013 13 N -0.348 5.348 14 C 0.356 3.644 15 O -0.442 6.442 16 C -0.092 4.092 17 C -0.126 4.126 18 C -0.097 4.097 19 C -0.074 4.074 20 C -0.144 4.144 21 C -0.211 4.211 22 C -0.199 4.199 23 C -0.076 4.076 24 N -0.189 5.189 25 H 0.091 0.909 26 H 0.229 0.771 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.256 0.744 30 H 0.174 0.826 31 H 0.197 0.803 32 H 0.157 0.843 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.107 0.893 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 23.381 -15.589 0.251 28.103 hybrid contribution -0.018 0.636 -0.002 0.636 sum 23.363 -14.953 0.248 27.740 Atomic orbital electron populations 1.69780 1.08062 1.29530 1.49148 1.26096 0.96467 1.02667 0.95610 0.85421 0.79577 0.76829 0.80134 1.17992 1.19707 1.15523 1.19030 0.80934 0.95303 1.50915 0.92015 1.41899 1.06143 1.07315 1.66228 1.20480 0.90012 0.83941 0.82532 1.90547 1.70731 1.32434 1.56292 1.21011 0.89842 0.84727 1.05683 1.45652 1.07425 1.09149 1.72586 1.18197 0.81795 0.88209 0.76202 1.90731 1.55879 1.45279 1.52286 1.20923 0.92001 0.91939 1.04346 1.22266 0.94624 0.99461 0.96208 1.21807 1.02140 0.90136 0.95621 1.20678 0.93751 0.96451 0.96498 1.21092 1.01287 0.86127 1.05916 1.23210 0.97755 1.00167 0.99999 1.23130 1.03689 1.01695 0.91427 1.23075 0.95616 0.92424 0.96506 1.67534 1.39728 1.01108 1.10494 0.90857 0.77106 0.87179 0.87088 0.74367 0.82563 0.80264 0.84287 0.88513 0.86505 0.86405 0.89293 0.80795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.07 13.96 21.66 0.30 -54.77 16 2 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 3 Si 0.96 38.55 27.74 68.60 1.90 40.45 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 7 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 8 H 0.06 4.24 7.39 -2.91 -0.02 4.22 16 9 N -0.58 -27.26 5.09 -306.99 -1.56 -28.83 16 10 C 0.44 20.33 7.85 87.66 0.69 21.02 16 11 O -0.61 -33.64 15.24 -3.05 -0.05 -33.69 16 12 C 0.11 4.01 6.15 85.63 0.53 4.54 16 13 N -0.70 -24.78 5.52 -469.40 -2.59 -27.36 16 14 C 0.57 18.98 7.81 86.88 0.68 19.66 16 15 O -0.56 -20.03 16.32 -3.76 -0.06 -20.09 16 16 C 0.04 1.27 6.75 41.91 0.28 1.55 16 17 C -0.10 -2.22 9.63 22.61 0.22 -2.00 16 18 C -0.07 -1.05 9.88 22.45 0.22 -0.83 16 19 C -0.07 -1.10 5.63 -19.70 -0.11 -1.21 16 20 C -0.13 -1.17 6.06 -11.54 -0.07 -1.24 16 21 C -0.17 -1.48 9.87 30.60 0.30 -1.17 16 22 C -0.16 -1.36 10.17 30.60 0.31 -1.05 16 23 C 0.08 1.74 10.47 84.82 0.89 2.63 16 24 N -0.48 -13.44 9.54 -184.91 -1.76 -15.20 16 25 H 0.28 15.28 8.31 -92.72 -0.77 14.51 16 26 H 0.39 15.48 5.76 -92.71 -0.53 14.95 16 27 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 28 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.42 16.06 6.77 -92.71 -0.63 15.43 16 30 H 0.16 3.02 7.64 -2.91 -0.02 3.00 16 31 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 0.93 6.20 -2.39 -0.01 0.91 16 34 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.18 2.91 6.03 -2.91 -0.02 2.89 16 Total: -1.00 -77.04 325.08 1.35 -75.69 By element: Atomic # 1 Polarization: 40.47 SS G_CDS: -0.09 Total: 40.39 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 5.26 Total: 23.42 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -5.61 Total: -126.17 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -0.11 Total: -53.78 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.90 Total: 40.45 kcal Total: -77.04 1.35 -75.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344146061.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.195 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds