Wall clock time and date at job start Tue Mar 31 2020 02:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86802 * 120.00223 * 2 1 4 4 H 1.48490 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46598 * 300.00157 * 3 2 1 6 6 H 1.48502 * 109.47003 * 59.99426 * 3 2 1 7 7 C 1.39906 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00307 * 190.11164 * 7 2 1 9 9 C 1.41154 * 119.99800 * 10.12017 * 7 2 1 10 10 C 1.40868 * 120.16295 * 208.13100 * 9 7 2 11 11 C 1.36372 * 119.82819 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.17288 * 0.02562 * 11 10 9 13 13 N 1.39230 * 119.83475 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99704 * 205.10518 * 13 12 11 15 15 O 1.21278 * 120.00127 * 351.87907 * 14 13 12 16 16 C 1.50701 * 120.00026 * 171.88798 * 14 13 12 17 17 N 1.46499 * 115.54658 * 312.79325 * 16 14 13 18 18 C 1.34770 * 120.00791 * 279.54045 * 17 16 14 19 19 N 1.34769 * 120.00582 * 175.43308 * 18 17 16 20 20 O 1.21591 * 119.99586 * 355.16269 * 18 17 16 21 21 C 1.52998 * 117.52005 * 98.49784 * 16 14 13 22 22 C 1.52995 * 117.50043 * 167.13148 * 16 14 13 23 23 C 1.39487 * 120.32734 * 0.25258 * 12 11 10 24 24 C 1.36374 * 120.16766 * 359.44214 * 23 12 11 25 25 H 0.97003 * 119.99876 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.08601 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.91703 * 180.02562 * 11 10 9 28 28 H 0.96993 * 120.00140 * 25.10307 * 13 12 11 29 29 H 0.97011 * 119.99719 * 99.54220 * 17 16 14 30 30 H 0.97008 * 120.00156 * 359.97438 * 19 18 17 31 31 H 0.97006 * 120.00172 * 180.02562 * 19 18 17 32 32 H 1.08999 * 117.50013 * 214.96644 * 21 16 14 33 33 H 1.08999 * 117.49930 * 359.97438 * 21 16 14 34 34 H 1.09007 * 117.50378 * 359.96866 * 22 16 14 35 35 H 1.08997 * 117.50217 * 144.99402 * 22 16 14 36 36 H 1.07996 * 119.91039 * 179.72149 * 23 12 11 37 37 H 1.08003 * 120.08455 * 180.25268 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8839 2.3965 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0756 -1.2188 0.1647 9 6 1.3189 -2.4246 -0.2137 10 6 1.8088 -3.6243 0.3388 11 6 1.1377 -4.7924 0.1270 12 6 -0.0307 -4.8014 -0.6348 13 7 -0.7100 -5.9981 -0.8470 14 6 -1.4962 -6.1434 -1.9320 15 8 -1.7300 -5.1896 -2.6436 16 6 -2.0849 -7.4911 -2.2609 17 7 -1.1494 -8.6176 -2.2144 18 6 -0.3258 -8.8532 -3.2548 19 7 0.5976 -9.8316 -3.1753 20 8 -0.4193 -8.1863 -4.2672 21 6 -3.5300 -7.7548 -1.8333 22 6 -3.1966 -7.5392 -3.3109 23 6 -0.5187 -3.6185 -1.1899 24 6 0.1381 -2.4416 -0.9817 25 1 -0.4850 0.8401 0.0004 26 1 2.7136 -3.6189 0.9286 27 1 1.5117 -5.7128 0.5503 28 1 -0.6174 -6.7272 -0.2140 29 1 -1.1227 -9.1939 -1.4345 30 1 0.6699 -10.3660 -2.3689 31 1 1.1906 -10.0009 -3.9241 32 1 -3.7848 -8.7664 -1.5173 33 1 -4.0552 -6.9535 -1.3134 34 1 -3.5028 -6.5960 -3.7635 35 1 -3.2321 -8.4089 -3.9669 36 1 -1.4215 -3.6340 -1.7824 37 1 -0.2432 -1.5259 -1.4087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347826294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:22 Heat of formation + Delta-G solvation = -6.990792 kcal Electronic energy + Delta-G solvation = -22365.974207 eV Core-core repulsion = 18916.286238 eV Total energy + Delta-G solvation = -3449.687969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57753 -39.28313 -37.57642 -36.32940 -34.48141 -33.93240 -32.91892 -32.13416 -29.47429 -29.00552 -25.60602 -23.65865 -22.74300 -21.82911 -21.31060 -20.53332 -19.28979 -18.37886 -17.94482 -17.28062 -16.75926 -16.25711 -15.44281 -15.33024 -14.88088 -14.40694 -14.38624 -14.04902 -13.83743 -13.26414 -12.95827 -12.63485 -12.06791 -11.77689 -11.63710 -11.44023 -11.19850 -11.13129 -11.03218 -10.66227 -10.61308 -10.26505 -10.05532 -9.81294 -9.73461 -9.52325 -9.34475 -8.98728 -8.51275 -7.48233 -6.88726 -6.63494 -4.26613 2.37777 2.64305 2.94698 3.10948 3.11262 3.13834 3.16841 3.26934 3.61331 3.83665 3.98599 4.25355 4.68491 4.71440 4.78737 4.91226 5.40434 5.43269 5.75567 5.85737 6.03667 6.13174 6.29079 6.44855 6.47590 6.74340 6.81675 6.98562 7.09490 7.21013 7.34012 7.67028 7.69331 7.77973 8.00274 8.11800 8.28007 8.36569 8.52464 8.70769 8.76226 8.94540 9.04746 10.28060 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027996 B = 0.003654 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.910792 B = 7661.198824 C = 8069.325079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.209 4.209 11 C -0.114 4.114 12 C 0.000 4.000 13 N -0.639 5.639 14 C 0.531 3.469 15 O -0.512 6.512 16 C 0.084 3.916 17 N -0.710 5.710 18 C 0.705 3.295 19 N -0.867 5.867 20 O -0.573 6.573 21 C -0.158 4.158 22 C -0.126 4.126 23 C -0.108 4.108 24 C -0.148 4.148 25 H 0.279 0.721 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.393 0.607 29 H 0.398 0.602 30 H 0.395 0.605 31 H 0.415 0.585 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 -18.090 0.070 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.098 3.902 10 C -0.230 4.230 11 C -0.134 4.134 12 C -0.092 4.092 13 N -0.280 5.280 14 C 0.315 3.685 15 O -0.387 6.387 16 C -0.008 4.008 17 N -0.368 5.368 18 C 0.403 3.597 19 N -0.436 5.436 20 O -0.448 6.448 21 C -0.196 4.196 22 C -0.165 4.165 23 C -0.128 4.128 24 C -0.168 4.168 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.226 0.774 29 H 0.233 0.767 30 H 0.223 0.777 31 H 0.248 0.752 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.146 0.854 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.599 -16.562 -1.264 17.235 hybrid contribution 0.939 -0.381 1.004 1.427 sum -3.660 -16.943 -0.259 17.336 Atomic orbital electron populations 1.69823 1.07403 1.28859 1.36516 1.25904 0.94846 1.01235 0.92535 0.86217 0.80732 0.80989 0.78474 1.18541 1.19791 1.20042 1.19567 0.95730 0.90545 1.43072 0.90543 1.17716 0.91989 0.92088 0.88456 1.20563 1.02475 0.93125 1.06791 1.19949 0.94457 0.97163 1.01811 1.17363 0.96659 0.84582 1.10632 1.42796 1.45791 1.15750 1.23620 1.19478 0.80074 0.88188 0.80745 1.90616 1.58607 1.39259 1.50244 1.20424 0.85188 0.85480 1.09698 1.44221 1.40547 1.31915 1.20126 1.15969 0.79373 0.80773 0.83549 1.42952 1.39585 1.38778 1.22265 1.91046 1.72794 1.50821 1.30141 1.23433 0.92881 1.03887 0.99373 1.23168 0.96982 1.04860 0.91443 1.21145 1.00687 0.91030 0.99943 1.21166 0.98224 0.96664 1.00750 0.91030 0.88657 0.89393 0.77416 0.76655 0.77734 0.75247 0.87508 0.87088 0.86657 0.87808 0.85404 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.35 10.76 55.55 0.60 -20.76 16 2 C 0.07 1.84 5.27 -17.34 -0.09 1.75 16 3 Si 0.91 19.23 29.57 -169.99 -5.03 14.21 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.46 -12.49 9.05 -37.85 -0.34 -12.83 16 8 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 9 C 0.10 2.76 5.56 -106.80 -0.59 2.16 16 10 C -0.21 -5.19 9.74 -39.26 -0.38 -5.57 16 11 C -0.11 -2.54 9.87 -39.79 -0.39 -2.94 16 12 C 0.00 0.00 6.49 -83.57 -0.54 -0.54 16 13 N -0.64 -11.62 5.33 -9.74 -0.05 -11.67 16 14 C 0.53 9.91 7.33 -10.98 -0.08 9.83 16 15 O -0.51 -11.83 13.12 5.56 0.07 -11.75 16 16 C 0.08 1.13 2.09 -132.97 -0.28 0.85 16 17 N -0.71 -7.49 5.42 -53.51 -0.29 -7.78 16 18 C 0.71 9.22 8.76 -86.93 -0.76 8.45 16 19 N -0.87 -6.89 8.88 27.63 0.25 -6.65 16 20 O -0.57 -10.77 16.75 5.29 0.09 -10.68 16 21 C -0.16 -1.54 10.16 -26.73 -0.27 -1.81 16 22 C -0.13 -1.61 9.35 -26.73 -0.25 -1.86 16 23 C -0.11 -2.81 8.78 -39.79 -0.35 -3.16 16 24 C -0.15 -4.11 8.61 -39.26 -0.34 -4.44 16 25 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 26 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 27 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 28 H 0.39 5.53 8.78 -40.82 -0.36 5.17 16 29 H 0.40 2.52 8.85 -40.82 -0.36 2.16 16 30 H 0.40 1.67 8.85 -40.82 -0.36 1.31 16 31 H 0.42 3.04 8.93 -40.82 -0.36 2.67 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.12 1.65 7.73 -51.93 -0.40 1.25 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.13 3.36 5.31 -52.51 -0.28 3.09 16 37 H 0.12 3.58 6.14 -52.48 -0.32 3.26 16 LS Contribution 323.48 15.07 4.87 4.87 Total: -1.00 -35.96 323.48 -8.27 -44.23 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -4.11 Total: 16.08 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -4.67 Total: -10.10 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.50 Total: -46.85 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.16 Total: -22.44 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.96 -8.27 -44.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347826294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.242 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds