Wall clock time and date at job start Tue Mar 31 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86802 * 120.00223 * 2 1 4 4 H 1.48490 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46598 * 300.00157 * 3 2 1 6 6 H 1.48502 * 109.47003 * 59.99426 * 3 2 1 7 7 C 1.39906 * 120.00104 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00307 * 190.11164 * 7 2 1 9 9 C 1.41154 * 119.99800 * 10.12017 * 7 2 1 10 10 C 1.40868 * 120.16295 * 208.13100 * 9 7 2 11 11 C 1.36372 * 119.82819 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.17288 * 0.02562 * 11 10 9 13 13 N 1.39230 * 119.83475 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99704 * 205.10518 * 13 12 11 15 15 O 1.21278 * 120.00127 * 351.87907 * 14 13 12 16 16 C 1.50701 * 120.00026 * 171.88798 * 14 13 12 17 17 N 1.46499 * 115.54658 * 312.79325 * 16 14 13 18 18 C 1.34770 * 120.00791 * 279.54045 * 17 16 14 19 19 N 1.34769 * 120.00582 * 175.43308 * 18 17 16 20 20 O 1.21591 * 119.99586 * 355.16269 * 18 17 16 21 21 C 1.52998 * 117.52005 * 98.49784 * 16 14 13 22 22 C 1.52995 * 117.50043 * 167.13148 * 16 14 13 23 23 C 1.39487 * 120.32734 * 0.25258 * 12 11 10 24 24 C 1.36374 * 120.16766 * 359.44214 * 23 12 11 25 25 H 0.97003 * 119.99876 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.08601 * 0.02562 * 10 9 7 27 27 H 1.07997 * 119.91703 * 180.02562 * 11 10 9 28 28 H 0.96993 * 120.00140 * 25.10307 * 13 12 11 29 29 H 0.97011 * 119.99719 * 99.54220 * 17 16 14 30 30 H 0.97008 * 120.00156 * 359.97438 * 19 18 17 31 31 H 0.97006 * 120.00172 * 180.02562 * 19 18 17 32 32 H 1.08999 * 117.50013 * 214.96644 * 21 16 14 33 33 H 1.08999 * 117.49930 * 359.97438 * 21 16 14 34 34 H 1.09007 * 117.50378 * 359.96866 * 22 16 14 35 35 H 1.08997 * 117.50217 * 144.99402 * 22 16 14 36 36 H 1.07996 * 119.91039 * 179.72149 * 23 12 11 37 37 H 1.08003 * 120.08455 * 180.25268 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8839 2.3965 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0756 -1.2188 0.1647 9 6 1.3189 -2.4246 -0.2137 10 6 1.8088 -3.6243 0.3388 11 6 1.1377 -4.7924 0.1270 12 6 -0.0307 -4.8014 -0.6348 13 7 -0.7100 -5.9981 -0.8470 14 6 -1.4962 -6.1434 -1.9320 15 8 -1.7300 -5.1896 -2.6436 16 6 -2.0849 -7.4911 -2.2609 17 7 -1.1494 -8.6176 -2.2144 18 6 -0.3258 -8.8532 -3.2548 19 7 0.5976 -9.8316 -3.1753 20 8 -0.4193 -8.1863 -4.2672 21 6 -3.5300 -7.7548 -1.8333 22 6 -3.1966 -7.5392 -3.3109 23 6 -0.5187 -3.6185 -1.1899 24 6 0.1381 -2.4416 -0.9817 25 1 -0.4850 0.8401 0.0004 26 1 2.7136 -3.6189 0.9286 27 1 1.5117 -5.7128 0.5503 28 1 -0.6174 -6.7272 -0.2140 29 1 -1.1227 -9.1939 -1.4345 30 1 0.6699 -10.3660 -2.3689 31 1 1.1906 -10.0009 -3.9241 32 1 -3.7848 -8.7664 -1.5173 33 1 -4.0552 -6.9535 -1.3134 34 1 -3.5028 -6.5960 -3.7635 35 1 -3.2321 -8.4089 -3.9669 36 1 -1.4215 -3.6340 -1.7824 37 1 -0.2432 -1.5259 -1.4087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347826294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:21 Heat of formation + Delta-G solvation = -36.399550 kcal Electronic energy + Delta-G solvation = -22367.249466 eV Core-core repulsion = 18916.286238 eV Total energy + Delta-G solvation = -3450.963228 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.83571 -40.60724 -39.22017 -37.63880 -36.24064 -34.96247 -34.72037 -33.01499 -31.44587 -30.90050 -27.36060 -25.12735 -23.65673 -23.33624 -22.89959 -22.18470 -20.64907 -19.29866 -19.24842 -19.16843 -18.09814 -17.54853 -17.09624 -16.54493 -16.27173 -15.76667 -15.64213 -15.47148 -15.28687 -14.82242 -14.61865 -14.24592 -13.93324 -13.64016 -13.34213 -12.93965 -12.79525 -12.53354 -12.42866 -12.19489 -11.86922 -11.62842 -11.55492 -11.37298 -11.29401 -10.90569 -10.80719 -10.63937 -9.95514 -9.46502 -8.80298 -8.55473 -6.29419 0.76080 1.11657 1.34023 1.38241 1.53424 1.54478 1.79559 2.07313 2.21476 2.26032 2.72607 2.82751 3.47605 3.66234 3.73883 3.78972 3.88021 4.39358 4.45921 4.55728 4.66143 4.91466 5.00751 5.06667 5.13503 5.16064 5.27196 5.36641 5.41859 5.70578 5.81059 5.85826 5.99948 6.06507 6.10850 6.33765 6.69077 6.71205 6.93450 7.00122 7.08652 7.33175 7.64523 8.37917 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027996 B = 0.003654 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.910792 B = 7661.198824 C = 8069.325079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.495 4.495 8 H 0.079 0.921 9 C 0.067 3.933 10 C -0.217 4.217 11 C -0.106 4.106 12 C 0.011 3.989 13 N -0.627 5.627 14 C 0.524 3.476 15 O -0.565 6.565 16 C 0.070 3.930 17 N -0.688 5.688 18 C 0.697 3.303 19 N -0.842 5.842 20 O -0.638 6.638 21 C -0.109 4.109 22 C -0.143 4.143 23 C -0.128 4.128 24 C -0.175 4.175 25 H 0.285 0.715 26 H 0.113 0.887 27 H 0.137 0.863 28 H 0.418 0.582 29 H 0.424 0.576 30 H 0.417 0.583 31 H 0.420 0.580 32 H 0.154 0.846 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 -21.031 1.796 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.187 4.187 3 Si 0.808 3.192 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.064 3.936 10 C -0.237 4.237 11 C -0.126 4.126 12 C -0.083 4.083 13 N -0.270 5.270 14 C 0.310 3.690 15 O -0.443 6.443 16 C -0.023 4.023 17 N -0.348 5.348 18 C 0.395 3.605 19 N -0.412 5.412 20 O -0.518 6.518 21 C -0.146 4.146 22 C -0.182 4.182 23 C -0.147 4.147 24 C -0.195 4.195 25 H 0.095 0.905 26 H 0.131 0.869 27 H 0.155 0.845 28 H 0.255 0.745 29 H 0.263 0.737 30 H 0.248 0.752 31 H 0.253 0.747 32 H 0.171 0.829 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.146 -19.630 0.549 20.071 hybrid contribution 0.748 0.355 0.436 0.936 sum -3.397 -19.275 0.986 19.597 Atomic orbital electron populations 1.69912 1.09037 1.30122 1.37208 1.26833 0.95617 1.04738 0.91475 0.85076 0.79332 0.75986 0.78770 1.17856 1.19438 1.18827 1.19845 0.96044 0.91600 1.45016 0.90243 1.18057 0.92391 0.93732 0.89392 1.20865 1.03195 0.93073 1.06529 1.20336 0.93361 0.98301 1.00559 1.17458 0.96753 0.85319 1.08793 1.42670 1.45148 1.14803 1.24395 1.20496 0.78925 0.89820 0.79715 1.90596 1.60151 1.41859 1.51712 1.20069 0.86727 0.83767 1.11756 1.43894 1.39449 1.30925 1.20491 1.16314 0.80041 0.81033 0.83136 1.42713 1.37793 1.37287 1.23380 1.91018 1.74604 1.53382 1.32773 1.23620 0.88419 1.06393 0.96199 1.23162 0.97479 1.04068 0.93459 1.21197 1.00682 0.92108 1.00759 1.21034 0.99596 0.96466 1.02397 0.90452 0.86924 0.84480 0.74527 0.73680 0.75151 0.74661 0.82866 0.87015 0.89465 0.86830 0.86599 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.65 10.76 21.82 0.23 -46.42 16 2 C 0.03 1.40 5.27 85.24 0.45 1.84 16 3 Si 0.99 40.19 29.57 68.60 2.03 42.22 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.50 -27.81 9.05 23.39 0.21 -27.60 16 8 H 0.08 4.23 7.86 -2.91 -0.02 4.21 16 9 C 0.07 3.80 5.56 -21.28 -0.12 3.68 16 10 C -0.22 -10.65 9.74 22.48 0.22 -10.43 16 11 C -0.11 -4.51 9.87 22.13 0.22 -4.29 16 12 C 0.01 0.48 6.49 38.57 0.25 0.73 16 13 N -0.63 -21.69 5.33 -303.11 -1.62 -23.31 16 14 C 0.52 19.29 7.33 87.66 0.64 19.94 16 15 O -0.57 -27.16 13.12 -3.02 -0.04 -27.20 16 16 C 0.07 1.72 2.09 2.86 0.01 1.73 16 17 N -0.69 -12.19 5.42 -441.47 -2.39 -14.59 16 18 C 0.70 16.69 8.76 179.06 1.57 18.26 16 19 N -0.84 -10.80 8.88 -184.76 -1.64 -12.44 16 20 O -0.64 -23.86 16.75 -4.00 -0.07 -23.93 16 21 C -0.11 -1.72 10.16 30.59 0.31 -1.41 16 22 C -0.14 -3.50 9.35 30.59 0.29 -3.21 16 23 C -0.13 -6.91 8.78 22.14 0.19 -6.72 16 24 C -0.17 -10.26 8.61 22.48 0.19 -10.06 16 25 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 26 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 27 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 28 H 0.42 10.19 8.78 -92.71 -0.81 9.38 16 29 H 0.42 3.21 8.85 -92.70 -0.82 2.39 16 30 H 0.42 1.75 8.85 -92.70 -0.82 0.93 16 31 H 0.42 5.11 8.93 -92.70 -0.83 4.28 16 32 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.09 2.62 7.73 -2.38 -0.02 2.60 16 35 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.12 6.51 5.31 -3.24 -0.02 6.49 16 37 H 0.10 6.13 6.14 -2.91 -0.02 6.11 16 Total: -1.00 -85.84 323.48 -1.17 -87.02 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -2.11 Total: 36.18 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 4.43 Total: -17.54 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -5.42 Total: -96.75 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -0.11 Total: -51.13 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -85.84 -1.17 -87.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347826294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.619 kcal (2) G-P(sol) polarization free energy of solvation -85.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds