Wall clock time and date at job start Tue Mar 31 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34885 * 125.64503 * 2 1 4 4 C 1.35872 * 109.07925 * 180.25213 * 3 2 1 5 5 C 1.39386 * 107.92156 * 359.75486 * 4 3 2 6 6 C 1.37846 * 125.65272 * 179.82697 * 2 1 3 7 7 C 1.41534 * 126.31242 * 0.02562 * 6 2 1 8 8 O 1.21609 * 120.00189 * 359.71342 * 7 6 2 9 9 C 1.49089 * 120.00010 * 179.71208 * 7 6 2 10 10 O 1.21403 * 119.99811 * 4.56405 * 9 7 6 11 11 N 1.34773 * 120.00512 * 184.29078 * 9 7 6 12 12 C 1.46501 * 119.99399 * 354.57808 * 11 9 7 13 13 C 1.50695 * 109.47601 * 83.57177 * 12 11 9 14 14 H 1.07997 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00113 * 179.97438 * 13 12 11 16 16 N 1.31506 * 119.99981 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47054 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46930 * 120.00533 * 17 15 13 20 20 H 1.48497 * 109.46798 * 240.00438 * 17 15 13 21 21 C 1.46495 * 120.00425 * 174.57157 * 11 9 7 22 22 C 1.53002 * 109.47002 * 94.95324 * 21 11 9 23 23 C 1.47198 * 109.47215 * 179.97438 * 22 21 11 24 24 N 9.37384 * 115.10784 * 173.47503 * 2 1 3 25 25 H 1.09004 * 109.47001 * 270.16721 * 1 2 3 26 26 H 1.09000 * 109.47566 * 30.17343 * 1 2 3 27 27 H 1.08999 * 109.46658 * 150.18017 * 1 2 3 28 28 H 1.08007 * 125.45813 * 0.02562 * 3 2 1 29 29 H 1.08001 * 126.03868 * 179.72910 * 4 3 2 30 30 H 1.07996 * 126.53446 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46741 * 203.57366 * 12 11 9 32 32 H 1.08994 * 109.47431 * 323.56713 * 12 11 9 33 33 H 0.97006 * 120.00228 * 180.02562 * 16 15 13 34 34 H 1.09006 * 109.47042 * 214.95040 * 21 11 9 35 35 H 1.09000 * 109.47254 * 334.95481 * 21 11 9 36 36 H 1.08998 * 109.47134 * 300.00063 * 22 21 11 37 37 H 1.09005 * 109.47418 * 59.99802 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0961 0.0000 4 6 3.5534 0.7087 -0.0057 5 6 3.5864 -0.6847 -0.0037 6 6 2.2685 -1.1201 0.0034 7 6 1.8303 -2.4659 0.0069 8 8 0.6407 -2.7180 0.0125 9 6 2.8272 -3.5745 0.0039 10 8 4.0128 -3.3249 0.0820 11 7 2.4121 -4.8539 -0.0801 12 6 0.9804 -5.1630 -0.0485 13 6 0.4015 -5.0039 -1.4307 14 1 1.0366 -4.7032 -2.2508 15 6 -0.9387 -5.2434 -1.6486 16 7 -1.7120 -5.6101 -0.6501 17 14 -1.6561 -5.0469 -3.3622 18 1 -0.5851 -4.6297 -4.3023 19 1 -2.2305 -6.3411 -3.8097 20 1 -2.7229 -4.0143 -3.3367 21 6 3.3925 -5.9356 -0.2030 22 6 3.6972 -6.5076 1.1830 23 6 4.6817 -7.5948 1.0594 24 7 5.4426 -8.4331 0.9646 25 1 -0.3633 0.0030 1.0277 26 1 -0.3634 0.8884 -0.5165 27 1 -0.3632 -0.8916 -0.5110 28 1 1.9013 2.1180 0.0004 29 1 4.4114 1.3647 -0.0112 30 1 4.4691 -1.3069 -0.0066 31 1 0.8377 -6.1894 0.2893 32 1 0.4767 -4.4816 0.6370 33 1 -2.6548 -5.7790 -0.8034 34 1 2.9876 -6.7222 -0.8398 35 1 4.3096 -5.5462 -0.6450 36 1 4.1020 -5.7210 1.8197 37 1 2.7800 -6.8969 1.6251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362606710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:52 Heat of formation + Delta-G solvation = 28.588363 kcal Electronic energy + Delta-G solvation = -22856.461124 eV Core-core repulsion = 19408.315982 eV Total energy + Delta-G solvation = -3448.145141 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29845 -39.60501 -37.61533 -36.68113 -35.32145 -32.84401 -32.67272 -31.10857 -29.62505 -27.24851 -26.33033 -25.52382 -23.55129 -22.74589 -20.79572 -19.73205 -18.42957 -17.54000 -16.86741 -16.57182 -16.16635 -15.62521 -15.43154 -14.74470 -14.62516 -14.43264 -14.28641 -13.81881 -13.42279 -13.24653 -13.07715 -12.75034 -12.40418 -12.37057 -12.18983 -12.06594 -11.99170 -11.84932 -11.68097 -11.54305 -11.01898 -10.89781 -10.71701 -10.44062 -10.01124 -9.76057 -8.72519 -8.53702 -8.33966 -8.04334 -7.92304 -6.13893 -4.16204 1.18799 2.54707 2.77680 2.92654 2.93331 3.11837 3.22263 3.30898 3.34604 3.54156 4.01003 4.28071 4.35196 4.82465 4.96572 5.09149 5.22923 5.24392 5.28780 5.36452 5.48982 5.61930 5.64415 5.68373 5.85243 5.97793 6.18332 6.38549 6.41298 6.58150 6.95189 7.18173 7.26524 7.31921 7.39257 7.68796 7.76318 7.89080 8.07290 8.10718 8.60626 8.86189 9.47172 10.94510 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.007515 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.761327 B = 3724.763463 C = 6172.701829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.408 5.408 3 C 0.018 3.982 4 C -0.226 4.226 5 C -0.096 4.096 6 C -0.082 4.082 7 C 0.388 3.612 8 O -0.384 6.384 9 C 0.497 3.503 10 O -0.544 6.544 11 N -0.567 5.567 12 C 0.225 3.775 13 C -0.519 4.519 14 H 0.056 0.944 15 C 0.070 3.930 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.120 3.880 22 C -0.045 4.045 23 C 0.221 3.779 24 N -0.449 5.449 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.165 0.835 29 H 0.139 0.861 30 H 0.165 0.835 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.262 0.738 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 10.307 3.292 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.081 5.081 3 C -0.120 4.120 4 C -0.251 4.251 5 C -0.122 4.122 6 C -0.191 4.191 7 C 0.262 3.738 8 O -0.256 6.256 9 C 0.282 3.718 10 O -0.424 6.424 11 N -0.298 5.298 12 C 0.107 3.893 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.133 4.133 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.005 4.005 22 C -0.086 4.086 23 C -0.097 4.097 24 N -0.127 5.127 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.182 0.818 29 H 0.157 0.843 30 H 0.183 0.817 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.979 8.916 3.235 10.712 hybrid contribution -0.982 0.523 -0.966 1.474 sum 3.998 9.439 2.268 10.499 Atomic orbital electron populations 1.22353 0.76147 1.05541 1.03966 1.43891 1.06816 1.05318 1.52065 1.22007 0.91092 0.91496 1.07362 1.20945 0.95659 0.95644 1.12825 1.22186 0.95794 0.94702 0.99494 1.19542 0.91017 0.88119 1.20461 1.19899 0.89567 0.87506 0.76808 1.90802 1.17708 1.85464 1.31595 1.20275 0.88752 0.84526 0.78229 1.90591 1.17296 1.83796 1.50736 1.48331 1.10369 1.03887 1.67219 1.20014 0.72268 0.97988 0.99047 1.21303 0.94098 1.46575 0.93767 0.92572 1.24804 0.96757 0.94917 0.96802 1.69913 1.05864 1.46240 1.30659 0.86565 0.79189 0.77796 0.84629 1.19849 1.20938 1.20969 1.21273 0.94190 0.90816 0.94179 1.19754 0.95239 0.92183 1.01459 1.29075 0.93687 0.93902 0.92997 1.81185 1.11178 1.11542 1.08754 0.90536 0.90157 0.87335 0.81816 0.84297 0.81726 0.94671 0.91435 0.92801 0.89081 0.89489 0.87122 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.77 10.53 59.85 0.63 1.40 16 2 N -0.41 -6.00 3.15 -121.68 -0.38 -6.39 16 3 C 0.02 0.22 11.35 -17.06 -0.19 0.03 16 4 C -0.23 -2.95 10.81 -40.00 -0.43 -3.39 16 5 C -0.10 -1.52 9.95 -38.95 -0.39 -1.91 16 6 C -0.08 -1.41 6.72 -83.70 -0.56 -1.97 16 7 C 0.39 7.53 6.83 -33.82 -0.23 7.30 16 8 O -0.38 -8.25 10.35 5.27 0.05 -8.19 16 9 C 0.50 9.51 7.63 -11.76 -0.09 9.42 16 10 O -0.54 -10.29 13.62 5.45 0.07 -10.22 16 11 N -0.57 -10.63 2.47 -175.71 -0.43 -11.07 16 12 C 0.23 5.01 4.78 -5.20 -0.02 4.98 16 13 C -0.52 -13.07 7.91 -34.44 -0.27 -13.35 16 14 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 15 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 17 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.12 1.84 5.35 -4.04 -0.02 1.82 16 22 C -0.05 -0.56 6.02 -29.52 -0.18 -0.74 16 23 C 0.22 3.08 15.43 -20.76 -0.32 2.76 16 24 N -0.45 -7.31 18.54 42.16 0.78 -6.52 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.11 1.68 6.27 -51.93 -0.33 1.36 16 28 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.17 2.65 6.09 -52.49 -0.32 2.33 16 31 H 0.04 0.79 8.02 -51.93 -0.42 0.38 16 32 H 0.07 1.63 5.73 -51.93 -0.30 1.33 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 35 H 0.09 1.32 7.36 -51.93 -0.38 0.93 16 36 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -30.35 327.42 -5.68 -36.04 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.24 Total: 1.19 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -2.18 Total: 8.08 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.70 Total: -47.31 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.13 Total: -18.41 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.35 -5.68 -36.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362606710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.624 kcal (2) G-P(sol) polarization free energy of solvation -30.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds