Wall clock time and date at job start Tue Mar 31 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34885 * 125.64503 * 2 1 4 4 C 1.35872 * 109.07925 * 180.25213 * 3 2 1 5 5 C 1.39386 * 107.92156 * 359.75486 * 4 3 2 6 6 C 1.37846 * 125.65272 * 179.82697 * 2 1 3 7 7 C 1.41534 * 126.31242 * 0.02562 * 6 2 1 8 8 O 1.21609 * 120.00189 * 359.71342 * 7 6 2 9 9 C 1.49089 * 120.00010 * 179.71208 * 7 6 2 10 10 O 1.21403 * 119.99811 * 4.56405 * 9 7 6 11 11 N 1.34773 * 120.00512 * 184.29078 * 9 7 6 12 12 C 1.46501 * 119.99399 * 354.57808 * 11 9 7 13 13 C 1.50695 * 109.47601 * 83.57177 * 12 11 9 14 14 H 1.07997 * 120.00006 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00113 * 179.97438 * 13 12 11 16 16 N 1.31506 * 119.99981 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47054 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46930 * 120.00533 * 17 15 13 20 20 H 1.48497 * 109.46798 * 240.00438 * 17 15 13 21 21 C 1.46495 * 120.00425 * 174.57157 * 11 9 7 22 22 C 1.53002 * 109.47002 * 94.95324 * 21 11 9 23 23 C 1.47198 * 109.47215 * 179.97438 * 22 21 11 24 24 N 9.37384 * 115.10784 * 173.47503 * 2 1 3 25 25 H 1.09004 * 109.47001 * 270.16721 * 1 2 3 26 26 H 1.09000 * 109.47566 * 30.17343 * 1 2 3 27 27 H 1.08999 * 109.46658 * 150.18017 * 1 2 3 28 28 H 1.08007 * 125.45813 * 0.02562 * 3 2 1 29 29 H 1.08001 * 126.03868 * 179.72910 * 4 3 2 30 30 H 1.07996 * 126.53446 * 180.02562 * 5 4 3 31 31 H 1.09004 * 109.46741 * 203.57366 * 12 11 9 32 32 H 1.08994 * 109.47431 * 323.56713 * 12 11 9 33 33 H 0.97006 * 120.00228 * 180.02562 * 16 15 13 34 34 H 1.09006 * 109.47042 * 214.95040 * 21 11 9 35 35 H 1.09000 * 109.47254 * 334.95481 * 21 11 9 36 36 H 1.08998 * 109.47134 * 300.00063 * 22 21 11 37 37 H 1.09005 * 109.47418 * 59.99802 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.0961 0.0000 4 6 3.5534 0.7087 -0.0057 5 6 3.5864 -0.6847 -0.0037 6 6 2.2685 -1.1201 0.0034 7 6 1.8303 -2.4659 0.0069 8 8 0.6407 -2.7180 0.0125 9 6 2.8272 -3.5745 0.0039 10 8 4.0128 -3.3249 0.0820 11 7 2.4121 -4.8539 -0.0801 12 6 0.9804 -5.1630 -0.0485 13 6 0.4015 -5.0039 -1.4307 14 1 1.0366 -4.7032 -2.2508 15 6 -0.9387 -5.2434 -1.6486 16 7 -1.7120 -5.6101 -0.6501 17 14 -1.6561 -5.0469 -3.3622 18 1 -0.5851 -4.6297 -4.3023 19 1 -2.2305 -6.3411 -3.8097 20 1 -2.7229 -4.0143 -3.3367 21 6 3.3925 -5.9356 -0.2030 22 6 3.6972 -6.5076 1.1830 23 6 4.6817 -7.5948 1.0594 24 7 5.4426 -8.4331 0.9646 25 1 -0.3633 0.0030 1.0277 26 1 -0.3634 0.8884 -0.5165 27 1 -0.3632 -0.8916 -0.5110 28 1 1.9013 2.1180 0.0004 29 1 4.4114 1.3647 -0.0112 30 1 4.4691 -1.3069 -0.0066 31 1 0.8377 -6.1894 0.2893 32 1 0.4767 -4.4816 0.6370 33 1 -2.6548 -5.7790 -0.8034 34 1 2.9876 -6.7222 -0.8398 35 1 4.3096 -5.5462 -0.6450 36 1 4.1020 -5.7210 1.8197 37 1 2.7800 -6.8969 1.6251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362606710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:58:52 Heat of formation + Delta-G solvation = 11.456892 kcal Electronic energy + Delta-G solvation = -22857.204000 eV Core-core repulsion = 19408.315982 eV Total energy + Delta-G solvation = -3448.888017 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.49065 -41.01407 -39.06115 -37.95112 -36.81102 -34.66495 -33.77660 -32.49237 -30.84290 -29.05785 -27.37036 -26.83705 -25.18200 -24.23405 -22.01858 -20.89243 -19.77766 -18.90362 -18.34992 -18.06985 -17.66432 -17.02448 -16.71734 -16.33952 -15.92978 -15.86012 -15.53416 -15.16114 -14.74012 -14.49712 -14.32478 -14.12352 -14.02577 -13.62654 -13.58529 -13.32205 -13.14008 -13.08042 -13.00008 -12.86886 -12.72689 -12.65681 -12.24969 -11.89242 -11.70760 -11.56799 -10.58361 -9.95577 -9.62987 -9.59838 -9.12421 -8.11926 -6.19010 -0.17222 1.27657 1.38427 1.42023 1.50065 1.56916 1.79054 1.79653 1.98884 2.24822 2.44990 2.61694 3.09157 3.22524 3.38558 4.01852 4.07026 4.11008 4.19954 4.22897 4.40985 4.53171 4.55274 4.65569 4.79378 4.81969 4.91536 5.01518 5.28493 5.34454 5.42022 5.61346 5.82841 5.87104 6.02297 6.16251 6.32302 6.40059 6.54741 6.58402 6.86521 7.13668 7.47224 8.95699 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.007515 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.761327 B = 3724.763463 C = 6172.701829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.415 5.415 3 C 0.046 3.954 4 C -0.233 4.233 5 C -0.098 4.098 6 C -0.128 4.128 7 C 0.385 3.615 8 O -0.422 6.422 9 C 0.493 3.507 10 O -0.543 6.543 11 N -0.568 5.568 12 C 0.243 3.757 13 C -0.520 4.520 14 H 0.043 0.957 15 C 0.027 3.973 16 N -0.917 5.917 17 Si 0.942 3.058 18 H -0.275 1.275 19 H -0.278 1.278 20 H -0.282 1.282 21 C 0.117 3.883 22 C -0.030 4.030 23 C 0.246 3.754 24 N -0.487 5.487 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.213 0.787 29 H 0.170 0.830 30 H 0.156 0.844 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.263 0.737 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.992 12.532 3.189 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.087 5.087 3 C -0.092 4.092 4 C -0.256 4.256 5 C -0.125 4.125 6 C -0.237 4.237 7 C 0.262 3.738 8 O -0.297 6.297 9 C 0.278 3.722 10 O -0.424 6.424 11 N -0.299 5.299 12 C 0.123 3.877 13 C -0.559 4.559 14 H 0.061 0.939 15 C -0.173 4.173 16 N -0.557 5.557 17 Si 0.769 3.231 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.208 1.208 21 C -0.007 4.007 22 C -0.071 4.071 23 C -0.071 4.071 24 N -0.165 5.165 25 H 0.103 0.897 26 H 0.137 0.863 27 H 0.092 0.908 28 H 0.230 0.770 29 H 0.187 0.813 30 H 0.173 0.827 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.144 0.856 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.481 11.127 3.129 12.792 hybrid contribution -1.025 0.002 -0.929 1.383 sum 4.455 11.129 2.200 12.188 Atomic orbital electron populations 1.22413 0.75270 1.05661 1.04612 1.44127 1.07565 1.05258 1.51751 1.22859 0.90499 0.92673 1.03201 1.21337 0.97313 0.94499 1.12425 1.22274 0.94911 0.96369 0.98908 1.19426 0.92191 0.88048 1.24038 1.20163 0.89131 0.88696 0.75813 1.90791 1.18615 1.85983 1.34269 1.20442 0.88914 0.84708 0.78127 1.90579 1.17161 1.83826 1.50787 1.48214 1.09615 1.04713 1.67378 1.19571 0.73939 0.97058 0.97146 1.21473 0.94115 1.45633 0.94665 0.93916 1.25411 0.97244 0.95043 0.99592 1.69992 1.06036 1.47568 1.32086 0.85760 0.78361 0.77811 0.81215 1.20022 1.20352 1.20796 1.21404 0.93359 0.89968 0.95984 1.19668 0.95561 0.92005 0.99902 1.29122 0.92903 0.93254 0.91796 1.81215 1.12527 1.12854 1.09938 0.89694 0.86267 0.90849 0.76997 0.81288 0.82691 0.94912 0.93277 0.92794 0.89158 0.89233 0.85648 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.46 10.53 127.77 1.35 2.80 16 2 N -0.41 -11.43 3.15 -538.87 -1.70 -13.13 16 3 C 0.05 0.95 11.35 83.67 0.95 1.89 16 4 C -0.23 -5.30 10.81 22.00 0.24 -5.06 16 5 C -0.10 -3.00 9.95 22.68 0.23 -2.77 16 6 C -0.13 -4.40 6.72 39.14 0.26 -4.14 16 7 C 0.38 15.36 6.83 26.00 0.18 15.54 16 8 O -0.42 -18.91 10.35 -4.06 -0.04 -18.96 16 9 C 0.49 19.16 7.63 87.16 0.66 19.83 16 10 O -0.54 -20.57 13.62 -3.41 -0.05 -20.61 16 11 N -0.57 -21.58 2.47 -828.16 -2.05 -23.63 16 12 C 0.24 11.06 4.78 85.63 0.41 11.47 16 13 C -0.52 -26.78 7.91 25.60 0.20 -26.58 16 14 H 0.04 2.27 7.81 -2.91 -0.02 2.24 16 15 C 0.03 1.42 5.46 84.66 0.46 1.88 16 16 N -0.92 -50.53 13.29 21.45 0.28 -50.24 16 17 Si 0.94 42.48 29.54 68.60 2.03 44.51 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C 0.12 3.53 5.35 86.38 0.46 3.99 16 22 C -0.03 -0.72 6.02 28.79 0.17 -0.55 16 23 C 0.25 6.60 15.43 89.44 1.38 7.98 16 24 N -0.49 -15.55 18.54 20.01 0.37 -15.18 16 25 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 26 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 2.33 6.27 -2.39 -0.01 2.32 16 28 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 30 H 0.16 4.94 6.09 -2.91 -0.02 4.92 16 31 H 0.03 1.50 8.02 -2.38 -0.02 1.48 16 32 H 0.05 2.47 5.73 -2.39 -0.01 2.46 16 33 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 34 H 0.09 2.74 8.11 -2.38 -0.02 2.72 16 35 H 0.09 2.67 7.36 -2.39 -0.02 2.65 16 36 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.13 2.77 8.14 -2.38 -0.02 2.75 16 Total: -1.00 -67.02 327.42 6.90 -60.12 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 1.10 Total: 10.83 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 6.95 Total: 26.29 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -3.09 Total: -102.18 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.09 Total: -39.57 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -67.02 6.90 -60.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362606710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.580 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds