Wall clock time and date at job start Tue Mar 31 2020 02:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42097 * 108.58272 * 2 1 4 4 O 1.42108 * 108.57775 * 228.97449 * 2 1 3 5 5 C 1.81402 * 101.92064 * 114.49385 * 2 1 3 6 6 H 1.08996 * 109.50409 * 64.93322 * 5 2 1 7 7 C 1.53043 * 109.49786 * 184.99957 * 5 2 1 8 8 C 1.53037 * 109.53875 * 181.31389 * 7 5 2 9 9 C 1.53196 * 109.31315 * 298.63222 * 8 7 5 10 10 N 1.46929 * 108.77486 * 54.63188 * 9 8 7 11 11 C 1.34783 * 120.62687 * 126.36877 * 10 9 8 12 12 O 1.21280 * 119.99660 * 180.02562 * 11 10 9 13 13 C 1.50696 * 119.99819 * 0.02562 * 11 10 9 14 14 C 1.53001 * 109.46892 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47317 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00082 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00317 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47323 * 59.99640 * 19 17 15 21 21 H 1.48503 * 109.47085 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46994 * 299.99552 * 19 17 15 23 23 C 1.46918 * 118.73922 * 306.39780 * 10 9 8 24 24 H 1.09004 * 109.47021 * 305.51240 * 1 2 3 25 25 H 1.08998 * 109.47165 * 65.50554 * 1 2 3 26 26 H 1.08992 * 109.47294 * 185.51271 * 1 2 3 27 27 H 1.09004 * 109.46377 * 61.28941 * 7 5 2 28 28 H 1.08996 * 109.44980 * 301.32610 * 7 5 2 29 29 H 1.08998 * 109.49886 * 178.68119 * 8 7 5 30 30 H 1.08994 * 109.52444 * 58.59984 * 8 7 5 31 31 H 1.08998 * 109.58804 * 174.42625 * 9 8 7 32 32 H 1.09003 * 109.58394 * 294.85202 * 9 8 7 33 33 H 1.09005 * 109.47250 * 299.99524 * 13 11 10 34 34 H 1.09001 * 109.47511 * 59.99735 * 13 11 10 35 35 H 1.08999 * 109.47366 * 299.99813 * 14 13 11 36 36 H 1.09001 * 109.47115 * 59.99670 * 14 13 11 37 37 H 0.97000 * 120.00615 * 179.97438 * 18 17 15 38 38 H 1.09008 * 109.58859 * 293.81127 * 23 10 9 39 39 H 1.09002 * 109.58786 * 173.39329 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7359 1.6152 6 1 1.8379 -1.7677 1.6352 7 6 3.7004 -0.7056 1.8520 8 6 4.0204 -1.3558 3.1999 9 6 3.3397 -0.5622 4.3196 10 7 1.9040 -0.4627 4.0233 11 6 0.9869 -0.8485 4.9324 12 8 -0.1952 -0.7619 4.6756 13 6 1.4304 -1.3876 6.2680 14 6 0.2020 -1.7484 7.1057 15 6 0.6454 -2.2880 8.4410 16 1 1.6981 -2.3655 8.6695 17 6 -0.2929 -2.6818 9.3714 18 7 -1.5748 -2.5861 9.0938 19 14 0.2568 -3.3501 11.0269 20 1 1.0551 -2.3187 11.7368 21 1 -0.9355 -3.7004 11.8400 22 1 1.0878 -4.5633 10.8198 23 6 1.4873 0.0648 2.7169 24 1 -0.3633 0.5970 0.8365 25 1 -0.3633 0.4261 -0.9352 26 1 -0.3633 -1.0228 0.0987 27 1 4.0468 0.3279 1.8559 28 1 4.2035 -1.2541 1.0557 29 1 5.0990 -1.3549 3.3573 30 1 3.6527 -2.3818 3.2058 31 1 3.4819 -1.0760 5.2702 32 1 3.7716 0.4371 4.3738 33 1 2.0411 -2.2776 6.1160 34 1 2.0156 -0.6301 6.7894 35 1 -0.4084 -0.8582 7.2577 36 1 -0.3836 -2.5056 6.5844 37 1 -2.2349 -2.8635 9.7482 38 1 1.7681 1.1153 2.6404 39 1 0.4071 -0.0354 2.6101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408238845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:32 Heat of formation + Delta-G solvation = -116.597532 kcal Electronic energy + Delta-G solvation = -21512.903583 eV Core-core repulsion = 18161.613910 eV Total energy + Delta-G solvation = -3351.289674 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.03887 -37.46854 -37.22219 -36.32057 -33.64273 -33.09715 -31.95542 -30.80128 -29.67930 -26.42986 -25.03583 -23.87390 -21.95300 -20.84318 -19.12166 -18.73837 -17.42726 -16.72651 -16.46363 -16.32837 -15.91649 -15.38934 -15.22974 -14.76128 -14.45181 -14.37166 -13.80764 -13.52185 -13.44365 -13.16784 -13.02414 -12.40110 -12.35466 -12.29087 -12.21916 -12.17480 -11.64393 -11.38414 -11.34135 -11.16251 -11.04522 -10.95394 -10.64738 -10.54101 -10.03011 -9.68831 -9.28181 -9.09662 -8.63316 -8.36480 -6.00822 -4.05650 -0.33878 2.35731 3.02822 3.10850 3.29117 3.31090 3.36260 3.37675 3.68079 4.06452 4.21786 4.42904 4.51293 4.57400 4.64402 4.78036 4.92537 4.98402 5.18279 5.28067 5.34256 5.37920 5.44459 5.46423 5.52090 5.62759 5.70444 5.95541 6.10676 6.12022 6.49482 6.79951 7.56364 7.68140 7.78799 8.00883 8.31724 8.57431 9.02171 9.58237 11.10057 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.003379 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.665914 B = 8285.505466 C = 8782.241430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.424 3.576 3 O -0.937 6.937 4 O -0.940 6.940 5 C -0.589 4.589 6 H 0.142 0.858 7 C -0.104 4.104 8 C -0.128 4.128 9 C 0.105 3.895 10 N -0.618 5.618 11 C 0.514 3.486 12 O -0.533 6.533 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.529 4.529 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.123 3.877 24 H 0.134 0.866 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.024 0.976 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.083 0.917 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.154 4.840 -17.018 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.606 3.394 3 O -0.934 6.934 4 O -0.937 6.937 5 C -0.699 4.699 6 H 0.160 0.840 7 C -0.142 4.142 8 C -0.167 4.167 9 C -0.018 4.018 10 N -0.354 5.354 11 C 0.305 3.695 12 O -0.408 6.408 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.002 4.002 24 H 0.152 0.848 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.873 5.150 -17.728 20.935 hybrid contribution -0.307 -0.777 1.453 1.677 sum 9.567 4.372 -16.275 19.378 Atomic orbital electron populations 1.30284 1.26129 1.12194 1.12051 1.07828 0.78584 0.75792 0.77156 1.93589 1.79199 1.34211 1.86372 1.93598 1.79394 1.67156 1.53594 1.30665 1.06220 1.13357 1.19642 0.83955 1.21323 0.89867 1.03182 0.99843 1.21859 1.01083 1.00222 0.93519 1.21790 0.80011 1.00770 0.99275 1.48201 1.06881 1.65636 1.14709 1.21697 0.85473 0.75857 0.86486 1.90656 1.17167 1.53877 1.79074 1.21904 1.03452 1.00555 0.90872 1.18910 0.90622 0.97598 0.92910 1.21163 0.92778 1.43024 0.99775 0.92646 1.25017 0.94889 0.95788 0.98594 1.69978 1.00122 1.47381 1.35322 0.86647 0.78011 0.79404 0.83827 1.20213 1.21264 1.20241 1.21311 1.00428 0.96279 0.82162 0.84769 0.85126 0.84989 0.89810 0.90135 0.89820 0.90792 0.88406 0.91191 0.90108 0.90056 0.95796 0.95867 0.92845 0.89938 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.15 10.04 101.05 1.01 -3.13 16 2 S 2.42 20.70 4.90 -107.50 -0.53 20.17 16 3 O -0.94 -10.72 17.98 -57.83 -1.04 -11.76 16 4 O -0.94 -10.99 18.10 -57.83 -1.05 -12.04 16 5 C -0.59 -5.08 2.77 -26.61 -0.07 -5.15 16 6 H 0.14 1.11 8.14 -51.93 -0.42 0.68 16 7 C -0.10 -0.84 5.16 -26.69 -0.14 -0.98 16 8 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 9 C 0.10 1.05 6.34 -3.71 -0.02 1.03 16 10 N -0.62 -8.24 2.97 -172.76 -0.51 -8.75 16 11 C 0.51 9.35 7.70 -10.98 -0.08 9.27 16 12 O -0.53 -11.72 15.40 5.56 0.09 -11.63 16 13 C -0.13 -2.47 3.99 -27.88 -0.11 -2.59 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 15 C -0.53 -14.63 9.11 -34.44 -0.31 -14.95 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 19 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.12 1.34 5.26 -3.71 -0.02 1.32 16 24 H 0.13 0.77 6.92 -51.92 -0.36 0.41 16 25 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.98 5.93 -51.93 -0.31 0.68 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.41 7.69 -51.93 -0.40 1.02 16 34 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 35 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.08 0.79 8.06 -51.92 -0.42 0.37 16 39 H 0.10 1.15 5.61 -51.93 -0.29 0.86 16 LS Contribution 329.20 15.07 4.96 4.96 Total: -1.00 -37.91 329.20 -8.45 -46.36 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.95 Total: -3.38 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -0.13 Total: -13.95 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.22 Total: -34.96 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -2.00 Total: -35.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 20.70 SS G_CDS: -0.53 Total: 20.17 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.91 -8.45 -46.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.241 kcal (2) G-P(sol) polarization free energy of solvation -37.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds