Wall clock time and date at job start Tue Mar 31 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42097 * 108.58272 * 2 1 4 4 O 1.42108 * 108.57775 * 228.97449 * 2 1 3 5 5 C 1.81402 * 101.92064 * 114.49385 * 2 1 3 6 6 H 1.08996 * 109.50409 * 64.93322 * 5 2 1 7 7 C 1.53043 * 109.49786 * 184.99957 * 5 2 1 8 8 C 1.53037 * 109.53875 * 181.31389 * 7 5 2 9 9 C 1.53196 * 109.31315 * 298.63222 * 8 7 5 10 10 N 1.46929 * 108.77486 * 54.63188 * 9 8 7 11 11 C 1.34783 * 120.62687 * 126.36877 * 10 9 8 12 12 O 1.21280 * 119.99660 * 180.02562 * 11 10 9 13 13 C 1.50696 * 119.99819 * 0.02562 * 11 10 9 14 14 C 1.53001 * 109.46892 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.47317 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00082 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00317 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99877 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47323 * 59.99640 * 19 17 15 21 21 H 1.48503 * 109.47085 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46994 * 299.99552 * 19 17 15 23 23 C 1.46918 * 118.73922 * 306.39780 * 10 9 8 24 24 H 1.09004 * 109.47021 * 305.51240 * 1 2 3 25 25 H 1.08998 * 109.47165 * 65.50554 * 1 2 3 26 26 H 1.08992 * 109.47294 * 185.51271 * 1 2 3 27 27 H 1.09004 * 109.46377 * 61.28941 * 7 5 2 28 28 H 1.08996 * 109.44980 * 301.32610 * 7 5 2 29 29 H 1.08998 * 109.49886 * 178.68119 * 8 7 5 30 30 H 1.08994 * 109.52444 * 58.59984 * 8 7 5 31 31 H 1.08998 * 109.58804 * 174.42625 * 9 8 7 32 32 H 1.09003 * 109.58394 * 294.85202 * 9 8 7 33 33 H 1.09005 * 109.47250 * 299.99524 * 13 11 10 34 34 H 1.09001 * 109.47511 * 59.99735 * 13 11 10 35 35 H 1.08999 * 109.47366 * 299.99813 * 14 13 11 36 36 H 1.09001 * 109.47115 * 59.99670 * 14 13 11 37 37 H 0.97000 * 120.00615 * 179.97438 * 18 17 15 38 38 H 1.09008 * 109.58859 * 293.81127 * 23 10 9 39 39 H 1.09002 * 109.58786 * 173.39329 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7359 1.6152 6 1 1.8379 -1.7677 1.6352 7 6 3.7004 -0.7056 1.8520 8 6 4.0204 -1.3558 3.1999 9 6 3.3397 -0.5622 4.3196 10 7 1.9040 -0.4627 4.0233 11 6 0.9869 -0.8485 4.9324 12 8 -0.1952 -0.7619 4.6756 13 6 1.4304 -1.3876 6.2680 14 6 0.2020 -1.7484 7.1057 15 6 0.6454 -2.2880 8.4410 16 1 1.6981 -2.3655 8.6695 17 6 -0.2929 -2.6818 9.3714 18 7 -1.5748 -2.5861 9.0938 19 14 0.2568 -3.3501 11.0269 20 1 1.0551 -2.3187 11.7368 21 1 -0.9355 -3.7004 11.8400 22 1 1.0878 -4.5633 10.8198 23 6 1.4873 0.0648 2.7169 24 1 -0.3633 0.5970 0.8365 25 1 -0.3633 0.4261 -0.9352 26 1 -0.3633 -1.0228 0.0987 27 1 4.0468 0.3279 1.8559 28 1 4.2035 -1.2541 1.0557 29 1 5.0990 -1.3549 3.3573 30 1 3.6527 -2.3818 3.2058 31 1 3.4819 -1.0760 5.2702 32 1 3.7716 0.4371 4.3738 33 1 2.0411 -2.2776 6.1160 34 1 2.0156 -0.6301 6.7894 35 1 -0.4084 -0.8582 7.2577 36 1 -0.3836 -2.5056 6.5844 37 1 -2.2349 -2.8635 9.7482 38 1 1.7681 1.1153 2.6404 39 1 0.4071 -0.0354 2.6101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408238845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:31 Heat of formation + Delta-G solvation = -145.346890 kcal Electronic energy + Delta-G solvation = -21514.150249 eV Core-core repulsion = 18161.613910 eV Total energy + Delta-G solvation = -3352.536339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.22438 -38.56395 -38.05893 -37.13094 -35.60801 -34.22835 -33.07302 -32.31864 -30.25694 -28.09933 -26.22573 -24.86069 -23.43628 -21.97325 -19.93679 -19.80614 -18.91850 -17.98211 -17.36132 -17.31032 -17.06604 -16.56680 -16.45389 -16.34070 -15.60512 -15.19768 -14.83252 -14.57142 -14.24127 -14.09861 -14.02605 -13.83815 -13.68458 -13.29014 -13.22434 -13.11038 -12.96973 -12.77779 -12.55490 -12.33007 -12.10048 -12.04947 -11.91792 -11.77656 -11.55651 -11.32226 -11.28119 -10.65489 -10.55245 -9.71122 -8.17443 -6.31327 -1.02542 1.43101 1.47035 1.54701 1.59584 1.70588 2.05541 2.43798 2.61059 2.95130 3.15850 3.34884 3.52117 3.83423 3.87383 3.99664 4.05425 4.16939 4.21416 4.36472 4.47165 4.50542 4.56580 4.62324 4.68898 4.80333 4.91758 4.95352 5.00708 5.12903 5.30055 5.46892 5.54210 5.63237 5.85418 6.17917 6.33799 6.86912 7.20860 7.39103 8.94898 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.003379 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.665914 B = 8285.505466 C = 8782.241430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.443 3.557 3 O -0.967 6.967 4 O -0.973 6.973 5 C -0.583 4.583 6 H 0.151 0.849 7 C -0.112 4.112 8 C -0.123 4.123 9 C 0.092 3.908 10 N -0.606 5.606 11 C 0.513 3.487 12 O -0.584 6.584 13 C -0.117 4.117 14 C 0.043 3.957 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.289 1.289 22 H -0.262 1.262 23 C 0.111 3.889 24 H 0.141 0.859 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.103 0.897 35 H -0.018 1.018 36 H -0.017 1.017 37 H 0.263 0.737 38 H 0.099 0.901 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.515 4.679 -16.932 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.629 3.371 3 O -0.964 6.964 4 O -0.970 6.970 5 C -0.692 4.692 6 H 0.169 0.831 7 C -0.151 4.151 8 C -0.162 4.162 9 C -0.029 4.029 10 N -0.340 5.340 11 C 0.303 3.697 12 O -0.464 6.464 13 C -0.156 4.156 14 C 0.005 3.995 15 C -0.582 4.582 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.215 1.215 22 H -0.187 1.187 23 C -0.012 4.012 24 H 0.160 0.840 25 H 0.165 0.835 26 H 0.164 0.836 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.001 0.999 36 H 0.001 0.999 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.336 5.003 -17.679 22.131 hybrid contribution -1.050 -0.690 1.363 1.853 sum 11.286 4.313 -16.316 20.303 Atomic orbital electron populations 1.30234 1.23238 1.13571 1.13361 1.07109 0.79288 0.74414 0.76323 1.93546 1.80570 1.35578 1.86711 1.93556 1.80813 1.67746 1.54847 1.30602 1.06803 1.13419 1.18424 0.83145 1.21474 0.89253 1.04011 1.00346 1.21856 1.02466 0.99314 0.92524 1.22162 0.77910 1.02554 1.00315 1.48124 1.07660 1.63653 1.14566 1.21385 0.85330 0.76064 0.86922 1.90636 1.19309 1.56426 1.80021 1.21647 1.00547 1.02324 0.91109 1.18691 0.92556 0.94516 0.93729 1.21683 0.93816 1.42392 1.00271 0.90600 1.26103 0.94796 0.96077 1.03281 1.70160 1.01737 1.48854 1.36966 0.85406 0.77614 0.79239 0.78178 1.18711 1.21462 1.18701 1.21559 1.00659 0.97512 0.81497 0.84010 0.83534 0.83595 0.89022 0.88925 0.87103 0.91429 0.88206 0.89073 0.87838 0.87888 0.99926 0.99898 0.92881 0.88320 0.88376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -7.17 10.04 113.37 1.14 -6.03 16 2 S 2.44 38.61 4.90 -56.49 -0.28 38.34 16 3 O -0.97 -21.06 17.98 -127.37 -2.29 -23.35 16 4 O -0.97 -21.76 18.10 -127.37 -2.31 -24.06 16 5 C -0.58 -9.03 2.77 30.67 0.09 -8.95 16 6 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 7 C -0.11 -1.53 5.16 30.62 0.16 -1.37 16 8 C -0.12 -1.62 6.08 30.67 0.19 -1.43 16 9 C 0.09 1.59 6.34 86.36 0.55 2.14 16 10 N -0.61 -15.30 2.97 -818.89 -2.43 -17.73 16 11 C 0.51 18.70 7.70 87.65 0.67 19.37 16 12 O -0.58 -26.71 15.40 -3.03 -0.05 -26.75 16 13 C -0.12 -4.47 3.99 29.85 0.12 -4.35 16 14 C 0.04 2.31 4.26 29.85 0.13 2.44 16 15 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 16 H 0.08 3.81 7.74 -2.91 -0.02 3.78 16 17 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 18 N -0.94 -58.54 13.29 21.45 0.28 -58.26 16 19 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 23 C 0.11 2.28 5.26 86.36 0.45 2.73 16 24 H 0.14 1.42 6.92 -2.39 -0.02 1.41 16 25 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.70 5.93 -2.39 -0.01 1.69 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 3.46 7.69 -2.38 -0.02 3.44 16 34 H 0.10 3.47 7.94 -2.39 -0.02 3.45 16 35 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 36 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 37 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.10 1.72 8.06 -2.38 -0.02 1.70 16 39 H 0.10 2.14 5.61 -2.39 -0.01 2.12 16 Total: -1.00 -84.85 329.20 0.18 -84.67 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.03 Total: 6.97 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 4.19 Total: -25.23 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.15 Total: -75.99 kcal Atomic # 8 Polarization: -69.52 SS G_CDS: -4.64 Total: -74.17 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 38.61 SS G_CDS: -0.28 Total: 38.34 kcal Total: -84.85 0.18 -84.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.677 kcal (2) G-P(sol) polarization free energy of solvation -84.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds