Wall clock time and date at job start Tue Mar 31 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42102 * 108.57703 * 2 1 4 4 O 1.42094 * 108.57679 * 228.97705 * 2 1 3 5 5 C 1.81397 * 101.92215 * 114.48800 * 2 1 3 6 6 H 1.09006 * 109.49902 * 300.06835 * 5 2 1 7 7 C 1.53041 * 109.49862 * 180.02562 * 5 2 1 8 8 C 1.53041 * 109.53878 * 178.64979 * 7 5 2 9 9 C 1.53194 * 109.31182 * 61.36234 * 8 7 5 10 10 N 1.46926 * 108.77757 * 305.36758 * 9 8 7 11 11 C 1.34777 * 120.62694 * 233.58761 * 10 9 8 12 12 O 1.21278 * 119.99854 * 180.02562 * 11 10 9 13 13 C 1.50703 * 120.00161 * 359.97438 * 11 10 9 14 14 C 1.53000 * 109.46912 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46725 * 60.00489 * 19 17 15 21 21 H 1.48505 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00464 * 19 17 15 23 23 C 1.46922 * 118.74006 * 53.85543 * 10 9 8 24 24 H 1.09002 * 109.46809 * 305.50674 * 1 2 3 25 25 H 1.08992 * 109.47192 * 65.51269 * 1 2 3 26 26 H 1.09000 * 109.46870 * 185.51834 * 1 2 3 27 27 H 1.09003 * 109.45960 * 58.62907 * 7 5 2 28 28 H 1.08993 * 109.45773 * 298.66882 * 7 5 2 29 29 H 1.08997 * 109.49616 * 301.41433 * 8 7 5 30 30 H 1.09004 * 109.52224 * 181.33290 * 8 7 5 31 31 H 1.09004 * 109.58391 * 185.57690 * 9 8 7 32 32 H 1.09002 * 109.58450 * 65.15146 * 9 8 7 33 33 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 34 34 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 35 35 H 1.09001 * 109.47194 * 299.99742 * 14 13 11 36 36 H 1.08992 * 109.47399 * 59.99914 * 14 13 11 37 37 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.58436 * 65.92922 * 23 10 9 39 39 H 1.09002 * 109.58650 * 186.35082 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.7602 -0.1181 2.4046 7 6 3.7059 -0.8187 1.7991 8 6 4.0231 -1.4082 3.1753 9 6 3.4469 -2.8248 3.2647 10 7 2.0135 -2.7734 2.9461 11 6 1.1029 -3.2934 3.7928 12 8 -0.0774 -3.2451 3.5182 13 6 1.5513 -3.9359 5.0801 14 6 0.3298 -4.4414 5.8503 15 6 0.7783 -5.0845 7.1373 16 1 1.8294 -5.1278 7.3817 17 6 -0.1534 -5.6165 8.0033 18 7 -1.4333 -5.5633 7.7060 19 14 0.4026 -6.4142 9.5983 20 1 1.1306 -5.4167 10.4232 21 1 -0.7830 -6.9049 10.3460 22 1 1.3022 -7.5557 9.2936 23 6 1.5922 -2.1496 1.6844 24 1 -0.3633 0.5969 0.8366 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0229 0.0988 27 1 4.1360 0.1800 1.7239 28 1 4.1312 -1.4563 1.0242 29 1 3.5769 -0.7845 3.9499 30 1 5.1035 -1.4453 3.3155 31 1 3.5831 -3.2116 4.2747 32 1 3.9567 -3.4724 2.5513 33 1 2.0851 -3.2031 5.6852 34 1 2.2121 -4.7735 4.8571 35 1 -0.3314 -3.6040 6.0732 36 1 -0.2037 -5.1743 5.2450 37 1 -2.0888 -5.9373 8.3155 38 1 1.9539 -2.7432 0.8447 39 1 0.5043 -2.0909 1.6512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408238846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:34 Heat of formation + Delta-G solvation = -116.624202 kcal Electronic energy + Delta-G solvation = -21507.744372 eV Core-core repulsion = 18156.453542 eV Total energy + Delta-G solvation = -3351.290830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02564 -37.44882 -37.23177 -36.31773 -33.63729 -33.09077 -31.91149 -30.79202 -29.69239 -26.43113 -25.02965 -23.87410 -21.94914 -20.84170 -19.12460 -18.72847 -17.41768 -16.73130 -16.44078 -16.33975 -15.90856 -15.38577 -15.22121 -14.75559 -14.45038 -14.36256 -13.79260 -13.51254 -13.45031 -13.18598 -13.01725 -12.39641 -12.35866 -12.29068 -12.21599 -12.16829 -11.64278 -11.38129 -11.33929 -11.16064 -11.04550 -10.95308 -10.64642 -10.53811 -10.02842 -9.68636 -9.27923 -9.09413 -8.62606 -8.36368 -6.00710 -4.05537 -0.33757 2.36360 3.03208 3.11214 3.29088 3.31154 3.36311 3.37735 3.67596 4.07258 4.21745 4.42990 4.51128 4.57173 4.64463 4.78367 4.93374 4.98845 5.18452 5.28657 5.34369 5.37973 5.44729 5.46996 5.52612 5.63233 5.70807 5.95515 6.10903 6.12305 6.50022 6.80207 7.56875 7.68291 7.78999 8.01049 8.31876 8.57867 9.02290 9.58348 11.10174 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034380 B = 0.003377 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.229177 B = 8289.479229 C = 8785.095882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.424 3.576 3 O -0.941 6.941 4 O -0.937 6.937 5 C -0.589 4.589 6 H 0.142 0.858 7 C -0.104 4.104 8 C -0.127 4.127 9 C 0.105 3.895 10 N -0.618 5.618 11 C 0.514 3.486 12 O -0.533 6.533 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.529 4.529 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.124 3.876 24 H 0.131 0.869 25 H 0.130 0.870 26 H 0.134 0.866 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.262 0.738 38 H 0.084 0.916 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.868 10.988 -14.157 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.606 3.394 3 O -0.937 6.937 4 O -0.934 6.934 5 C -0.699 4.699 6 H 0.160 0.840 7 C -0.142 4.142 8 C -0.167 4.167 9 C -0.019 4.019 10 N -0.354 5.354 11 C 0.305 3.695 12 O -0.408 6.408 13 C -0.168 4.168 14 C 0.000 4.000 15 C -0.567 4.567 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.001 4.001 24 H 0.150 0.850 25 H 0.149 0.851 26 H 0.152 0.848 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.590 11.256 -14.886 20.983 hybrid contribution -0.318 -0.583 1.544 1.681 sum 9.272 10.673 -13.343 19.440 Atomic orbital electron populations 1.30277 1.26148 1.12304 1.11886 1.07834 0.78580 0.75612 0.77363 1.93595 1.79390 1.34307 1.86453 1.93589 1.79185 1.66868 1.53723 1.30728 1.06474 1.09290 1.23382 0.83999 1.21325 0.89834 1.03011 1.00069 1.21858 1.01524 0.96872 0.96406 1.21789 0.80402 0.96712 1.02948 1.48201 1.07228 1.59921 1.20092 1.21694 0.85459 0.76859 0.85513 1.90655 1.17208 1.57157 1.75763 1.21904 1.03416 0.99797 0.91664 1.18910 0.90707 0.96769 0.93657 1.21165 0.93071 1.38258 1.04241 0.92646 1.25016 0.94887 0.96104 0.98277 1.69979 1.00451 1.45429 1.36947 0.86648 0.78042 0.79734 0.83478 1.20237 1.21263 1.20217 1.21377 1.01257 0.88638 0.88818 0.85043 0.85145 0.84776 0.90001 0.89956 0.90791 0.89824 0.88409 0.91208 0.90120 0.90058 0.95866 0.95794 0.92847 0.89764 0.87910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.13 10.20 101.05 1.03 -3.10 16 2 S 2.42 20.68 4.88 -107.50 -0.53 20.15 16 3 O -0.94 -10.91 18.10 -57.83 -1.05 -11.96 16 4 O -0.94 -10.78 17.80 -57.83 -1.03 -11.81 16 5 C -0.59 -5.07 2.74 -26.39 -0.07 -5.14 16 6 H 0.14 1.08 8.14 -51.92 -0.42 0.66 16 7 C -0.10 -0.84 5.17 -26.69 -0.14 -0.98 16 8 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 9 C 0.10 1.05 6.34 -3.71 -0.02 1.03 16 10 N -0.62 -8.27 2.97 -172.50 -0.51 -8.78 16 11 C 0.51 9.37 7.70 -10.98 -0.08 9.29 16 12 O -0.53 -11.75 15.39 5.56 0.09 -11.66 16 13 C -0.13 -2.48 3.99 -27.88 -0.11 -2.59 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 15 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 19 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 C 0.12 1.36 5.40 -3.49 -0.02 1.34 16 24 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.13 0.78 7.03 -51.92 -0.36 0.41 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.98 5.93 -51.93 -0.31 0.68 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.41 7.69 -51.93 -0.40 1.01 16 34 H 0.08 1.44 7.94 -51.93 -0.41 1.02 16 35 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.08 0.83 7.92 -51.93 -0.41 0.42 16 39 H 0.10 1.15 5.75 -51.93 -0.30 0.86 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -37.90 329.38 -8.42 -46.32 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.96 Total: -3.38 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.11 Total: -13.86 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.22 Total: -35.00 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -1.99 Total: -35.43 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 20.68 SS G_CDS: -0.53 Total: 20.15 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.90 -8.42 -46.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.303 kcal (2) G-P(sol) polarization free energy of solvation -37.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds