Wall clock time and date at job start Tue Mar 31 2020 02:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42102 * 108.57703 * 2 1 4 4 O 1.42094 * 108.57679 * 228.97705 * 2 1 3 5 5 C 1.81397 * 101.92215 * 114.48800 * 2 1 3 6 6 H 1.09006 * 109.49902 * 300.06835 * 5 2 1 7 7 C 1.53041 * 109.49862 * 180.02562 * 5 2 1 8 8 C 1.53041 * 109.53878 * 178.64979 * 7 5 2 9 9 C 1.53194 * 109.31182 * 61.36234 * 8 7 5 10 10 N 1.46926 * 108.77757 * 305.36758 * 9 8 7 11 11 C 1.34777 * 120.62694 * 233.58761 * 10 9 8 12 12 O 1.21278 * 119.99854 * 180.02562 * 11 10 9 13 13 C 1.50703 * 120.00161 * 359.97438 * 11 10 9 14 14 C 1.53000 * 109.46912 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99776 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00001 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00114 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46725 * 60.00489 * 19 17 15 21 21 H 1.48505 * 109.46988 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00464 * 19 17 15 23 23 C 1.46922 * 118.74006 * 53.85543 * 10 9 8 24 24 H 1.09002 * 109.46809 * 305.50674 * 1 2 3 25 25 H 1.08992 * 109.47192 * 65.51269 * 1 2 3 26 26 H 1.09000 * 109.46870 * 185.51834 * 1 2 3 27 27 H 1.09003 * 109.45960 * 58.62907 * 7 5 2 28 28 H 1.08993 * 109.45773 * 298.66882 * 7 5 2 29 29 H 1.08997 * 109.49616 * 301.41433 * 8 7 5 30 30 H 1.09004 * 109.52224 * 181.33290 * 8 7 5 31 31 H 1.09004 * 109.58391 * 185.57690 * 9 8 7 32 32 H 1.09002 * 109.58450 * 65.15146 * 9 8 7 33 33 H 1.09002 * 109.47152 * 60.00245 * 13 11 10 34 34 H 1.09001 * 109.46980 * 300.00345 * 13 11 10 35 35 H 1.09001 * 109.47194 * 299.99742 * 14 13 11 36 36 H 1.08992 * 109.47399 * 59.99914 * 14 13 11 37 37 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.58436 * 65.92922 * 23 10 9 39 39 H 1.09002 * 109.58650 * 186.35082 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 1 1.7602 -0.1181 2.4046 7 6 3.7059 -0.8187 1.7991 8 6 4.0231 -1.4082 3.1753 9 6 3.4469 -2.8248 3.2647 10 7 2.0135 -2.7734 2.9461 11 6 1.1029 -3.2934 3.7928 12 8 -0.0774 -3.2451 3.5182 13 6 1.5513 -3.9359 5.0801 14 6 0.3298 -4.4414 5.8503 15 6 0.7783 -5.0845 7.1373 16 1 1.8294 -5.1278 7.3817 17 6 -0.1534 -5.6165 8.0033 18 7 -1.4333 -5.5633 7.7060 19 14 0.4026 -6.4142 9.5983 20 1 1.1306 -5.4167 10.4232 21 1 -0.7830 -6.9049 10.3460 22 1 1.3022 -7.5557 9.2936 23 6 1.5922 -2.1496 1.6844 24 1 -0.3633 0.5969 0.8366 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0229 0.0988 27 1 4.1360 0.1800 1.7239 28 1 4.1312 -1.4563 1.0242 29 1 3.5769 -0.7845 3.9499 30 1 5.1035 -1.4453 3.3155 31 1 3.5831 -3.2116 4.2747 32 1 3.9567 -3.4724 2.5513 33 1 2.0851 -3.2031 5.6852 34 1 2.2121 -4.7735 4.8571 35 1 -0.3314 -3.6040 6.0732 36 1 -0.2037 -5.1743 5.2450 37 1 -2.0888 -5.9373 8.3155 38 1 1.9539 -2.7432 0.8447 39 1 0.5043 -2.0909 1.6512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408238846.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:34 Heat of formation + Delta-G solvation = -145.342659 kcal Electronic energy + Delta-G solvation = -21508.989698 eV Core-core repulsion = 18156.453542 eV Total energy + Delta-G solvation = -3352.536156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 289.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21777 -38.54794 -38.06381 -37.12727 -35.60748 -34.22073 -33.06101 -32.28375 -30.26568 -28.10153 -26.22718 -24.86076 -23.43590 -21.97258 -19.93830 -19.80175 -18.91506 -17.97678 -17.36883 -17.29322 -17.07086 -16.56474 -16.44858 -16.33468 -15.60149 -15.19630 -14.82354 -14.56120 -14.23409 -14.09606 -14.02411 -13.85285 -13.68985 -13.29146 -13.21995 -13.10737 -12.97103 -12.77746 -12.55536 -12.33160 -12.09489 -12.04828 -11.91816 -11.77908 -11.55617 -11.32133 -11.27832 -10.65515 -10.55248 -9.70896 -8.17424 -6.31322 -1.02301 1.43092 1.47064 1.54725 1.60263 1.70676 2.05346 2.43814 2.61387 2.94021 3.15871 3.35885 3.52008 3.83222 3.87385 3.99842 4.05447 4.17715 4.21541 4.36574 4.47219 4.50690 4.56746 4.62331 4.69346 4.79911 4.92124 4.95473 5.00928 5.12965 5.29991 5.46897 5.54207 5.63243 5.85444 6.17899 6.33937 6.86906 7.20909 7.39114 8.94927 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.034380 B = 0.003377 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.229177 B = 8289.479229 C = 8785.095882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.443 3.557 3 O -0.971 6.971 4 O -0.968 6.968 5 C -0.582 4.582 6 H 0.152 0.848 7 C -0.113 4.113 8 C -0.122 4.122 9 C 0.092 3.908 10 N -0.606 5.606 11 C 0.512 3.488 12 O -0.584 6.584 13 C -0.117 4.117 14 C 0.043 3.957 15 C -0.544 4.544 16 H 0.076 0.924 17 C -0.005 4.005 18 N -0.937 5.937 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.289 1.289 22 H -0.263 1.263 23 C 0.113 3.887 24 H 0.147 0.853 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.103 0.897 35 H -0.017 1.017 36 H -0.018 1.018 37 H 0.263 0.737 38 H 0.098 0.902 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.209 11.307 -13.823 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.628 3.372 3 O -0.968 6.968 4 O -0.965 6.965 5 C -0.692 4.692 6 H 0.170 0.830 7 C -0.151 4.151 8 C -0.161 4.161 9 C -0.030 4.030 10 N -0.340 5.340 11 C 0.303 3.697 12 O -0.464 6.464 13 C -0.156 4.156 14 C 0.005 3.995 15 C -0.582 4.582 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.577 5.577 19 Si 0.796 3.204 20 H -0.187 1.187 21 H -0.215 1.215 22 H -0.187 1.187 23 C -0.011 4.011 24 H 0.165 0.835 25 H 0.164 0.836 26 H 0.159 0.841 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.001 0.999 36 H 0.001 0.999 37 H 0.071 0.929 38 H 0.116 0.884 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.033 11.600 -14.585 22.183 hybrid contribution -1.056 -0.655 1.371 1.850 sum 10.977 10.946 -13.215 20.370 Atomic orbital electron populations 1.30225 1.23220 1.13341 1.13554 1.07125 0.79307 0.74246 0.76527 1.93554 1.80795 1.35696 1.86801 1.93545 1.80587 1.67378 1.55016 1.30667 1.07214 1.07648 1.23697 0.83015 1.21475 0.89195 1.04038 1.00395 1.21856 1.03019 0.95123 0.96129 1.22163 0.78280 0.98754 1.03757 1.48126 1.08017 1.58116 1.19754 1.21389 0.85299 0.77176 0.85850 1.90635 1.19362 1.59543 1.76880 1.21648 1.00559 1.01213 0.92198 1.18691 0.92587 0.94301 0.93914 1.21683 0.94103 1.37747 1.04622 0.90596 1.26103 0.94804 0.96770 1.02582 1.70161 1.02079 1.46846 1.38635 0.85406 0.77633 0.79073 0.78328 1.18676 1.21461 1.18730 1.21611 1.01405 0.90203 0.87893 0.83499 0.83583 0.84106 0.88787 0.89188 0.91367 0.87104 0.88189 0.89138 0.87814 0.87904 0.99881 0.99946 0.92882 0.88373 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -7.11 10.20 113.37 1.16 -5.96 16 2 S 2.44 38.58 4.88 -56.49 -0.28 38.30 16 3 O -0.97 -21.48 18.10 -127.37 -2.31 -23.79 16 4 O -0.97 -21.32 17.80 -127.37 -2.27 -23.59 16 5 C -0.58 -9.01 2.74 30.82 0.08 -8.93 16 6 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 7 C -0.11 -1.53 5.17 30.62 0.16 -1.37 16 8 C -0.12 -1.61 6.08 30.67 0.19 -1.42 16 9 C 0.09 1.60 6.34 86.36 0.55 2.15 16 10 N -0.61 -15.39 2.97 -818.06 -2.43 -17.82 16 11 C 0.51 18.75 7.70 87.66 0.67 19.42 16 12 O -0.58 -26.80 15.39 -3.02 -0.05 -26.85 16 13 C -0.12 -4.47 3.99 29.85 0.12 -4.35 16 14 C 0.04 2.31 4.26 29.85 0.13 2.44 16 15 C -0.54 -30.21 9.11 25.60 0.23 -29.97 16 16 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 17 C 0.00 -0.29 5.46 84.66 0.46 0.18 16 18 N -0.94 -58.56 13.29 21.45 0.28 -58.28 16 19 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 20 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 23 C 0.11 2.34 5.40 86.51 0.47 2.80 16 24 H 0.15 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.15 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.14 1.44 7.03 -2.39 -0.02 1.42 16 27 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.10 1.71 5.93 -2.38 -0.01 1.70 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 3.47 7.69 -2.39 -0.02 3.45 16 34 H 0.10 3.47 7.94 -2.39 -0.02 3.45 16 35 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 36 H -0.02 -1.10 8.10 -2.39 -0.02 -1.12 16 37 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.10 1.78 7.92 -2.39 -0.02 1.76 16 39 H 0.10 2.15 5.75 -2.39 -0.01 2.13 16 Total: -1.00 -84.87 329.38 0.24 -84.63 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.03 Total: 6.98 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 4.22 Total: -25.01 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.14 Total: -76.09 kcal Atomic # 8 Polarization: -69.60 SS G_CDS: -4.62 Total: -74.22 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 38.58 SS G_CDS: -0.28 Total: 38.30 kcal Total: -84.87 0.24 -84.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238846.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.712 kcal (2) G-P(sol) polarization free energy of solvation -84.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds