Wall clock time and date at job start Tue Mar 31 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21284 * 119.99761 * 2 1 4 4 N 1.34773 * 120.00199 * 179.97438 * 2 1 3 5 5 C 1.39264 * 120.00317 * 185.13138 * 4 2 1 6 6 C 1.39382 * 119.88935 * 33.36939 * 5 4 2 7 7 C 1.36529 * 120.11451 * 180.27763 * 6 5 4 8 8 C 1.40311 * 119.88246 * 359.50160 * 7 6 5 9 9 C 1.46687 * 120.10984 * 180.24619 * 8 7 6 10 10 C 1.50696 * 120.00064 * 0.25214 * 9 8 7 11 11 N 1.30735 * 119.99728 * 180.24763 * 9 8 7 12 12 N 1.40100 * 119.99374 * 180.02562 * 11 9 8 13 13 C 1.34777 * 119.99506 * 180.02562 * 12 11 9 14 14 O 1.21983 * 120.00319 * 359.97438 * 13 12 11 15 15 C 1.40616 * 119.99986 * 179.97438 * 13 12 11 16 16 H 1.08008 * 119.99731 * 6.30100 * 15 13 12 17 17 C 1.40190 * 120.00406 * 186.29703 * 15 13 12 18 18 N 1.30616 * 119.99895 * 353.69568 * 17 15 13 19 19 Si 1.86805 * 120.00261 * 173.69740 * 17 15 13 20 20 H 1.48497 * 109.46966 * 94.98630 * 19 17 15 21 21 H 1.48500 * 109.46952 * 214.98413 * 19 17 15 22 22 H 1.48502 * 109.47016 * 334.98572 * 19 17 15 23 23 C 1.40313 * 119.78065 * 0.50013 * 8 7 6 24 24 C 1.36529 * 119.88674 * 359.75119 * 23 8 7 25 25 H 1.09000 * 109.47001 * 270.00504 * 1 2 3 26 26 H 1.08998 * 109.46786 * 30.00237 * 1 2 3 27 27 H 1.08999 * 109.47068 * 150.00561 * 1 2 3 28 28 H 0.97003 * 119.99603 * 5.12773 * 4 2 1 29 29 H 1.07998 * 119.94351 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.05787 * 179.74139 * 7 6 5 31 31 H 1.09002 * 109.46743 * 89.99518 * 10 9 8 32 32 H 1.08993 * 109.47367 * 209.99721 * 10 9 8 33 33 H 1.09002 * 109.47098 * 329.99884 * 10 9 8 34 34 H 0.97004 * 120.00439 * 0.02562 * 12 11 9 35 35 H 0.96998 * 119.99963 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.05706 * 179.73386 * 23 8 7 37 37 H 1.07994 * 119.94668 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5694 -1.1695 0.1084 6 6 4.2087 -0.1920 0.8689 7 6 5.5700 -0.1866 0.9732 8 6 6.3249 -1.1737 0.3216 9 6 7.7874 -1.1758 0.4347 10 6 8.4811 -0.1201 1.2563 11 7 8.4889 -2.0937 -0.1772 12 7 9.8857 -2.0960 -0.0688 13 6 10.6090 -3.0420 -0.7000 14 8 10.0474 -3.8964 -1.3654 15 6 12.0109 -3.0441 -0.5917 16 1 12.5019 -2.3524 0.0770 17 6 12.7715 -3.9439 -1.3514 18 7 12.1763 -4.8614 -2.0656 19 14 14.6361 -3.8309 -1.3424 20 1 15.1840 -4.7708 -0.3318 21 1 15.1600 -4.1873 -2.6854 22 1 15.0463 -2.4446 -1.0029 23 6 5.6765 -2.1556 -0.4428 24 6 4.3151 -2.1492 -0.5450 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5137 28 1 1.6988 -2.0056 -0.0742 29 1 3.6264 0.5650 1.3733 30 1 6.0646 0.5738 1.5593 31 1 8.5833 -0.4685 2.2841 32 1 9.4689 0.0744 0.8387 33 1 7.8929 0.7974 1.2405 34 1 10.3322 -1.4169 0.4607 35 1 12.7025 -5.4837 -2.5916 36 1 6.2535 -2.9149 -0.9497 37 1 3.8151 -2.9042 -1.1335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408719829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:08 Heat of formation + Delta-G solvation = -6.187848 kcal Electronic energy + Delta-G solvation = -21332.840949 eV Core-core repulsion = 17883.187798 eV Total energy + Delta-G solvation = -3449.653151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.61204 -38.73297 -37.64710 -35.93751 -34.64300 -32.72622 -31.79486 -31.10735 -30.43494 -28.35684 -27.95426 -26.26892 -23.30822 -22.60472 -20.71776 -20.46362 -18.80868 -18.03578 -17.65267 -17.10725 -16.02891 -15.62013 -15.42319 -15.02445 -14.57757 -14.08529 -14.03470 -13.95238 -13.73493 -13.29379 -13.10374 -12.83595 -12.71710 -12.61919 -12.37512 -12.14079 -11.61755 -11.36429 -11.23918 -11.13034 -10.75359 -10.64164 -10.37670 -10.27734 -9.98243 -9.39600 -9.00239 -8.87292 -8.32092 -7.75520 -7.07712 -6.40902 -4.94335 1.01325 1.64891 2.28041 2.84417 2.95329 3.05678 3.11006 3.15506 3.75962 4.09638 4.11003 4.42060 4.45255 4.78044 4.89793 4.98165 5.04234 5.13082 5.38429 5.45538 5.51019 5.56068 5.65941 5.73136 5.79400 5.81868 6.10627 6.25497 6.34434 6.44834 6.54717 6.75001 6.96738 7.13049 7.19393 7.21011 7.85279 7.87949 7.99927 8.70404 8.76659 9.30940 10.38873 10.65178 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.045132 B = 0.002666 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.249817 B =10498.653166 C =11004.315268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.526 6.526 4 N -0.670 5.670 5 C 0.131 3.869 6 C -0.121 4.121 7 C -0.093 4.093 8 C -0.022 4.022 9 C 0.040 3.960 10 C -0.139 4.139 11 N -0.186 5.186 12 N -0.587 5.587 13 C 0.558 3.442 14 O -0.554 6.554 15 C -0.537 4.537 16 H 0.071 0.929 17 C 0.088 3.912 18 N -0.744 5.744 19 Si 0.916 3.084 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.262 1.262 23 C -0.073 4.073 24 C -0.142 4.142 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.410 0.590 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.370 0.630 35 H 0.274 0.726 36 H 0.141 0.859 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.517 7.968 6.510 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.295 3.705 3 O -0.402 6.402 4 N -0.315 5.315 5 C 0.036 3.964 6 C -0.141 4.141 7 C -0.114 4.114 8 C -0.025 4.025 9 C -0.148 4.148 10 C -0.198 4.198 11 N 0.003 4.997 12 N -0.333 5.333 13 C 0.366 3.634 14 O -0.434 6.434 15 C -0.574 4.574 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.371 5.371 19 Si 0.740 3.260 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.094 4.094 24 C -0.163 4.163 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.246 0.754 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.207 0.793 35 H 0.085 0.915 36 H 0.158 0.842 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.346 7.104 5.293 20.372 hybrid contribution 1.074 0.619 0.707 1.427 sum -17.271 7.723 6.000 19.848 Atomic orbital electron populations 1.21887 0.90949 1.05187 1.05027 1.20989 0.90815 0.83295 0.75434 1.90758 1.70522 1.31222 1.47659 1.43469 1.05620 1.09740 1.72711 1.17882 0.82348 0.98134 0.98080 1.20676 0.94596 0.99438 0.99361 1.20913 0.93090 0.97929 0.99428 1.18411 0.89966 0.95676 0.98410 1.22774 0.92953 0.96954 1.02111 1.21091 1.00610 0.98346 0.99781 1.74979 0.94270 1.17654 1.12808 1.48078 0.98965 1.33060 1.53242 1.16780 0.86990 0.79866 0.79737 1.90718 1.71950 1.37803 1.42942 1.19721 0.90139 1.20699 1.26818 0.91109 1.25766 1.00800 0.93445 0.93524 1.70023 1.37169 1.10993 1.18930 0.86213 0.81832 0.79598 0.78367 1.19497 1.20072 1.18574 1.21119 0.93426 0.98011 0.96819 1.20587 0.94176 1.00308 1.01190 0.88525 0.88598 0.89984 0.75445 0.85094 0.85340 0.90954 0.91624 0.90724 0.79300 0.91491 0.84151 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.31 36.01 0.37 -0.43 16 2 C 0.51 4.86 7.67 -10.99 -0.08 4.77 16 3 O -0.53 -7.45 14.75 5.55 0.08 -7.37 16 4 N -0.67 -6.01 5.31 -9.78 -0.05 -6.06 16 5 C 0.13 1.63 6.29 -83.63 -0.53 1.10 16 6 C -0.12 -1.62 8.58 -39.77 -0.34 -1.96 16 7 C -0.09 -1.27 9.32 -39.42 -0.37 -1.64 16 8 C -0.02 -0.36 5.88 -104.93 -0.62 -0.97 16 9 C 0.04 0.73 7.10 -79.65 -0.57 0.16 16 10 C -0.14 -1.97 9.04 36.00 0.33 -1.65 16 11 N -0.19 -4.28 10.19 35.07 0.36 -3.92 16 12 N -0.59 -14.29 6.11 28.91 0.18 -14.11 16 13 C 0.56 16.38 7.64 -15.36 -0.12 16.27 16 14 O -0.55 -18.62 15.22 4.93 0.08 -18.54 16 15 C -0.54 -14.97 9.25 -37.95 -0.35 -15.32 16 16 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 17 C 0.09 2.40 5.49 -17.34 -0.10 2.31 16 18 N -0.74 -21.85 11.73 55.56 0.65 -21.19 16 19 Si 0.92 19.42 29.57 -169.99 -5.03 14.39 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 23 C -0.07 -1.18 9.54 -39.42 -0.38 -1.56 16 24 C -0.14 -1.86 9.90 -39.77 -0.39 -2.26 16 25 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.41 2.17 8.81 -40.82 -0.36 1.82 16 29 H 0.13 1.74 6.39 -52.49 -0.34 1.40 16 30 H 0.13 1.48 6.34 -52.49 -0.33 1.15 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.95 6.37 -51.93 -0.33 0.62 16 33 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 34 H 0.37 7.67 6.41 -182.59 -1.17 6.50 16 35 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 36 H 0.14 2.55 7.55 -52.49 -0.40 2.15 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 325.29 15.07 4.90 4.90 Total: -1.00 -38.13 325.29 -6.89 -45.02 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.92 Total: 8.03 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.14 Total: -1.16 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 1.13 Total: -45.28 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: 0.16 Total: -25.91 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -38.13 -6.89 -45.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408719829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.834 kcal (2) G-P(sol) polarization free energy of solvation -38.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds