Wall clock time and date at job start Tue Mar 31 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21284 * 119.99761 * 2 1 4 4 N 1.34773 * 120.00199 * 179.97438 * 2 1 3 5 5 C 1.39264 * 120.00317 * 185.13138 * 4 2 1 6 6 C 1.39382 * 119.88935 * 33.36939 * 5 4 2 7 7 C 1.36529 * 120.11451 * 180.27763 * 6 5 4 8 8 C 1.40311 * 119.88246 * 359.50160 * 7 6 5 9 9 C 1.46687 * 120.10984 * 180.24619 * 8 7 6 10 10 C 1.50696 * 120.00064 * 0.25214 * 9 8 7 11 11 N 1.30735 * 119.99728 * 180.24763 * 9 8 7 12 12 N 1.40100 * 119.99374 * 180.02562 * 11 9 8 13 13 C 1.34777 * 119.99506 * 180.02562 * 12 11 9 14 14 O 1.21983 * 120.00319 * 359.97438 * 13 12 11 15 15 C 1.40616 * 119.99986 * 179.97438 * 13 12 11 16 16 H 1.08008 * 119.99731 * 6.30100 * 15 13 12 17 17 C 1.40190 * 120.00406 * 186.29703 * 15 13 12 18 18 N 1.30616 * 119.99895 * 353.69568 * 17 15 13 19 19 Si 1.86805 * 120.00261 * 173.69740 * 17 15 13 20 20 H 1.48497 * 109.46966 * 94.98630 * 19 17 15 21 21 H 1.48500 * 109.46952 * 214.98413 * 19 17 15 22 22 H 1.48502 * 109.47016 * 334.98572 * 19 17 15 23 23 C 1.40313 * 119.78065 * 0.50013 * 8 7 6 24 24 C 1.36529 * 119.88674 * 359.75119 * 23 8 7 25 25 H 1.09000 * 109.47001 * 270.00504 * 1 2 3 26 26 H 1.08998 * 109.46786 * 30.00237 * 1 2 3 27 27 H 1.08999 * 109.47068 * 150.00561 * 1 2 3 28 28 H 0.97003 * 119.99603 * 5.12773 * 4 2 1 29 29 H 1.07998 * 119.94351 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.05787 * 179.74139 * 7 6 5 31 31 H 1.09002 * 109.46743 * 89.99518 * 10 9 8 32 32 H 1.08993 * 109.47367 * 209.99721 * 10 9 8 33 33 H 1.09002 * 109.47098 * 329.99884 * 10 9 8 34 34 H 0.97004 * 120.00439 * 0.02562 * 12 11 9 35 35 H 0.96998 * 119.99963 * 179.97438 * 18 17 15 36 36 H 1.08000 * 120.05706 * 179.73386 * 23 8 7 37 37 H 1.07994 * 119.94668 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.5694 -1.1695 0.1084 6 6 4.2087 -0.1920 0.8689 7 6 5.5700 -0.1866 0.9732 8 6 6.3249 -1.1737 0.3216 9 6 7.7874 -1.1758 0.4347 10 6 8.4811 -0.1201 1.2563 11 7 8.4889 -2.0937 -0.1772 12 7 9.8857 -2.0960 -0.0688 13 6 10.6090 -3.0420 -0.7000 14 8 10.0474 -3.8964 -1.3654 15 6 12.0109 -3.0441 -0.5917 16 1 12.5019 -2.3524 0.0770 17 6 12.7715 -3.9439 -1.3514 18 7 12.1763 -4.8614 -2.0656 19 14 14.6361 -3.8309 -1.3424 20 1 15.1840 -4.7708 -0.3318 21 1 15.1600 -4.1873 -2.6854 22 1 15.0463 -2.4446 -1.0029 23 6 5.6765 -2.1556 -0.4428 24 6 4.3151 -2.1492 -0.5450 25 1 -0.3633 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5137 28 1 1.6988 -2.0056 -0.0742 29 1 3.6264 0.5650 1.3733 30 1 6.0646 0.5738 1.5593 31 1 8.5833 -0.4685 2.2841 32 1 9.4689 0.0744 0.8387 33 1 7.8929 0.7974 1.2405 34 1 10.3322 -1.4169 0.4607 35 1 12.7025 -5.4837 -2.5916 36 1 6.2535 -2.9149 -0.9497 37 1 3.8151 -2.9042 -1.1335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408719829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:07 Heat of formation + Delta-G solvation = -35.534059 kcal Electronic energy + Delta-G solvation = -21334.113496 eV Core-core repulsion = 17883.187798 eV Total energy + Delta-G solvation = -3450.925698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.54423 -40.01195 -39.38554 -37.52558 -35.79528 -34.75197 -33.37804 -32.25849 -31.33058 -29.88850 -28.99620 -28.13810 -24.47144 -23.77606 -22.34841 -21.48569 -20.46465 -19.58887 -18.83107 -17.96984 -17.71151 -17.31974 -16.42296 -16.30496 -15.85202 -15.53067 -15.46803 -15.17333 -14.81845 -14.62778 -14.52177 -14.37951 -13.78618 -13.51787 -13.32592 -13.19003 -13.00845 -12.88190 -12.72723 -12.68705 -12.36775 -12.18672 -12.02479 -11.43846 -10.99968 -10.94916 -10.86757 -10.00692 -9.98931 -9.74162 -8.61667 -8.44511 -7.09737 -0.19988 0.50473 1.26546 1.38135 1.42299 1.57569 1.72997 2.08110 2.14678 2.36057 2.42169 2.93490 3.62179 3.63128 3.77849 3.95238 4.00374 4.20866 4.37391 4.39164 4.48269 4.59835 4.65732 4.68127 4.69997 4.94920 5.09256 5.12203 5.16004 5.19922 5.33430 5.38489 5.52485 5.66162 5.81324 6.01054 6.03553 6.45533 6.66683 6.96022 7.13924 7.45348 8.40474 8.58197 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.045132 B = 0.002666 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.249817 B =10498.653166 C =11004.315268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.503 3.497 3 O -0.575 6.575 4 N -0.660 5.660 5 C 0.148 3.852 6 C -0.132 4.132 7 C -0.072 4.072 8 C -0.063 4.063 9 C 0.082 3.918 10 C -0.143 4.143 11 N -0.266 5.266 12 N -0.593 5.593 13 C 0.543 3.457 14 O -0.618 6.618 15 C -0.563 4.563 16 H 0.094 0.906 17 C 0.029 3.971 18 N -0.801 5.801 19 Si 1.010 2.990 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.245 1.245 23 C -0.086 4.086 24 C -0.143 4.143 25 H 0.117 0.883 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.430 0.570 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.383 0.617 35 H 0.282 0.718 36 H 0.108 0.892 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.942 9.808 8.001 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.294 3.706 3 O -0.453 6.453 4 N -0.306 5.306 5 C 0.052 3.948 6 C -0.152 4.152 7 C -0.093 4.093 8 C -0.066 4.066 9 C -0.106 4.106 10 C -0.202 4.202 11 N -0.074 5.074 12 N -0.339 5.339 13 C 0.353 3.647 14 O -0.503 6.503 15 C -0.599 4.599 16 H 0.112 0.888 17 C -0.189 4.189 18 N -0.428 5.428 19 Si 0.828 3.172 20 H -0.182 1.182 21 H -0.194 1.194 22 H -0.168 1.168 23 C -0.107 4.107 24 C -0.163 4.163 25 H 0.135 0.865 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.270 0.730 29 H 0.156 0.844 30 H 0.174 0.826 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.222 0.778 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.836 8.966 6.824 22.813 hybrid contribution 1.073 0.206 0.343 1.145 sum -18.763 9.172 7.167 22.080 Atomic orbital electron populations 1.21928 0.86608 1.06720 1.06738 1.21959 0.92737 0.82289 0.73610 1.90742 1.71859 1.32918 1.49808 1.43532 1.04135 1.11069 1.71900 1.18031 0.84210 0.96654 0.95949 1.20879 0.94600 0.99916 0.99795 1.21125 0.93191 0.97015 0.97946 1.18521 0.89136 0.97733 1.01212 1.23610 0.93912 0.95063 0.98054 1.21261 1.00536 0.98437 0.99947 1.75070 0.93293 1.21425 1.17649 1.47299 1.00005 1.32894 1.53750 1.17195 0.88070 0.79979 0.79447 1.90647 1.73341 1.40479 1.45852 1.20277 0.90165 1.21678 1.27751 0.88751 1.27176 1.07452 0.92154 0.92142 1.70190 1.40214 1.12310 1.20118 0.84836 0.73048 0.80543 0.78813 1.18184 1.19361 1.16779 1.21048 0.94784 0.97675 0.97170 1.20728 0.92974 1.01217 1.01390 0.86516 0.88567 0.86976 0.73046 0.84404 0.82649 0.88793 0.91923 0.87375 0.77751 0.90803 0.87358 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 10.31 71.24 0.73 -0.13 16 2 C 0.50 8.18 7.67 87.66 0.67 8.85 16 3 O -0.57 -15.14 14.75 -3.04 -0.04 -15.18 16 4 N -0.66 -9.80 5.31 -303.24 -1.61 -11.41 16 5 C 0.15 3.39 6.29 38.51 0.24 3.63 16 6 C -0.13 -3.25 8.58 22.15 0.19 -3.06 16 7 C -0.07 -1.84 9.32 22.37 0.21 -1.63 16 8 C -0.06 -2.05 5.88 -20.06 -0.12 -2.17 16 9 C 0.08 3.03 7.10 44.93 0.32 3.35 16 10 C -0.14 -3.82 9.04 71.23 0.64 -3.18 16 11 N -0.27 -12.94 10.19 -42.95 -0.44 -13.37 16 12 N -0.59 -30.46 6.11 -180.55 -1.10 -31.56 16 13 C 0.54 33.86 7.64 84.82 0.65 34.51 16 14 O -0.62 -44.57 15.22 -5.26 -0.08 -44.65 16 15 C -0.56 -32.40 9.25 23.33 0.22 -32.19 16 16 H 0.09 4.76 7.86 -2.91 -0.02 4.73 16 17 C 0.03 1.63 5.49 85.35 0.47 2.10 16 18 N -0.80 -49.22 11.73 21.86 0.26 -48.96 16 19 Si 1.01 40.04 29.57 68.60 2.03 42.07 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.24 -8.94 7.11 99.48 0.71 -8.23 16 23 C -0.09 -2.86 9.54 22.38 0.21 -2.65 16 24 C -0.14 -3.61 9.90 22.15 0.22 -3.39 16 25 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 28 H 0.43 2.96 8.81 -92.71 -0.82 2.14 16 29 H 0.14 3.32 6.39 -2.91 -0.02 3.30 16 30 H 0.16 3.03 6.34 -2.91 -0.02 3.01 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 1.75 6.37 -2.39 -0.02 1.74 16 33 H 0.11 2.17 6.44 -2.39 -0.02 2.15 16 34 H 0.38 16.48 6.41 -213.32 -1.37 15.11 16 35 H 0.28 15.41 8.29 -92.71 -0.77 14.64 16 36 H 0.11 4.32 7.55 -2.91 -0.02 4.30 16 37 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -91.37 325.29 2.62 -88.75 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -1.05 Total: 30.27 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 4.66 Total: 4.05 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -2.89 Total: -105.31 kcal Atomic # 8 Polarization: -59.70 SS G_CDS: -0.12 Total: -59.83 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -91.37 2.62 -88.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408719829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.216 kcal (2) G-P(sol) polarization free energy of solvation -91.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds