Wall clock time and date at job start Tue Mar 31 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86800 * 120.00296 * 2 1 4 4 H 1.48497 * 109.47147 * 269.99981 * 3 2 1 5 5 H 1.48498 * 109.47101 * 30.00082 * 3 2 1 6 6 H 1.48505 * 109.47025 * 150.00126 * 3 2 1 7 7 C 1.39893 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99803 * 197.93232 * 7 2 1 9 9 C 1.41212 * 119.99996 * 17.93531 * 7 2 1 10 10 C 1.40837 * 120.17869 * 24.54845 * 9 7 2 11 11 C 1.36440 * 119.81047 * 180.02562 * 10 9 7 12 12 C 1.39312 * 120.18345 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81463 * 179.97438 * 12 11 10 14 14 C 1.42906 * 117.00016 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47244 * 180.02562 * 14 13 12 16 16 H 1.09007 * 109.47233 * 55.00161 * 15 14 13 17 17 O 1.42902 * 109.47296 * 295.00371 * 15 14 13 18 18 C 1.53001 * 109.47179 * 174.99886 * 15 14 13 19 19 N 1.46502 * 109.46813 * 184.99973 * 18 15 14 20 20 C 1.35313 * 125.86318 * 125.00922 * 19 18 15 21 21 C 1.35354 * 106.17477 * 179.97438 * 20 19 18 22 22 N 1.33773 * 106.49669 * 359.97438 * 21 20 19 23 23 N 1.28640 * 108.88473 * 359.73392 * 22 21 20 24 24 C 1.39311 * 120.36851 * 0.25952 * 12 11 10 25 25 C 1.36444 * 120.18315 * 359.48017 * 24 12 11 26 26 H 0.97005 * 119.99207 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.09376 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.90667 * 179.97438 * 11 10 9 29 29 H 1.09003 * 109.46798 * 60.00471 * 14 13 12 30 30 H 1.08993 * 109.47176 * 300.00170 * 14 13 12 31 31 H 0.96698 * 113.99860 * 300.00121 * 17 15 14 32 32 H 1.08991 * 109.47059 * 305.00466 * 18 15 14 33 33 H 1.09003 * 109.46676 * 65.00503 * 18 15 14 34 34 H 1.08001 * 126.91114 * 0.02562 * 20 19 18 35 35 H 1.07997 * 126.75153 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.90612 * 179.72026 * 24 12 11 37 37 H 1.07993 * 120.09139 * 180.26048 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4400 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0488 -1.2342 0.2885 9 6 1.3535 -2.4049 -0.3755 10 6 0.2244 -2.3584 -1.2161 11 6 -0.4026 -3.5160 -1.5743 12 6 0.0713 -4.7415 -1.1114 13 8 -0.5584 -5.8879 -1.4719 14 6 -0.0219 -7.1106 -0.9624 15 6 -0.8573 -8.2861 -1.4732 16 1 -0.9045 -8.2525 -2.5617 17 8 -2.1789 -8.2003 -0.9364 18 6 -0.2116 -9.6009 -1.0312 19 7 -0.9428 -10.7260 -1.6193 20 6 -0.4058 -11.7133 -2.3728 21 6 -1.4296 -12.5349 -2.7029 22 7 -2.5282 -12.0171 -2.1421 23 7 -2.2051 -10.9489 -1.5022 24 6 1.1845 -4.7959 -0.2757 25 6 1.8263 -3.6480 0.0877 26 1 -0.4849 0.8402 -0.0004 27 1 -0.1444 -1.4091 -1.5754 28 1 -1.2688 -3.4821 -2.2185 29 1 -0.0478 -7.0924 0.1272 30 1 1.0083 -7.2237 -1.2996 31 1 -2.2133 -8.2243 0.0297 32 1 0.8254 -9.6268 -1.3656 33 1 -0.2448 -9.6744 0.0559 34 1 0.6312 -11.8240 -2.6535 35 1 -1.3710 -13.4320 -3.3013 36 1 1.5428 -5.7497 0.0824 37 1 2.6917 -3.6923 0.7322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424142418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:35 Heat of formation + Delta-G solvation = 35.222707 kcal Electronic energy + Delta-G solvation = -21539.924017 eV Core-core repulsion = 18092.066563 eV Total energy + Delta-G solvation = -3447.857454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.40212 -39.22325 -37.78035 -36.20991 -34.48779 -33.39015 -31.18848 -30.98249 -29.74251 -29.08602 -26.89897 -24.77086 -23.13239 -22.71722 -21.64240 -20.80711 -20.68960 -18.19623 -17.42906 -17.14420 -16.89770 -16.13411 -16.03460 -15.31064 -15.15358 -14.79030 -14.38909 -14.15318 -13.99442 -13.73747 -12.94120 -12.83298 -12.38802 -12.23143 -11.91568 -11.81292 -11.54303 -11.35553 -11.18713 -11.06113 -10.93899 -10.70725 -10.57953 -10.07521 -10.02618 -9.89016 -9.56960 -9.41369 -9.09297 -7.72265 -7.11829 -6.78491 -4.32398 1.40614 2.02667 2.43338 2.71430 2.87434 3.05170 3.08159 3.15943 3.53726 3.90477 3.96861 4.21480 4.39830 4.53243 4.57202 4.63594 4.81312 4.86476 5.00704 5.02491 5.36826 5.46705 5.58922 5.69997 5.94517 5.94785 6.14245 6.31809 6.64156 6.90220 7.03591 7.11430 7.37756 7.47822 7.51778 7.70090 7.93872 8.13233 8.35588 8.36636 8.57596 8.83380 8.91061 10.15986 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.061010 B = 0.002515 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.832726 B =11129.467482 C =11375.436323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.116 4.116 12 C -0.014 4.014 13 O -0.314 6.314 14 C 0.041 3.959 15 C 0.102 3.898 16 H 0.112 0.888 17 O -0.530 6.530 18 C 0.083 3.917 19 N -0.287 5.287 20 C -0.058 4.058 21 C -0.055 4.055 22 N -0.279 5.279 23 N -0.057 5.057 24 C -0.166 4.166 25 C -0.200 4.200 26 H 0.281 0.719 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.375 0.625 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.189 0.811 35 H 0.188 0.812 36 H 0.092 0.908 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -16.603 -2.168 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.135 4.135 12 C -0.057 4.057 13 O -0.230 6.230 14 C -0.036 4.036 15 C 0.041 3.959 16 H 0.130 0.870 17 O -0.334 6.334 18 C -0.039 4.039 19 N -0.081 5.081 20 C -0.208 4.208 21 C -0.211 4.211 22 N -0.145 5.145 23 N -0.037 5.037 24 C -0.185 4.185 25 C -0.220 4.220 26 H 0.092 0.908 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.223 0.777 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.206 0.794 35 H 0.205 0.795 36 H 0.110 0.890 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.237 -15.907 -2.288 16.118 hybrid contribution 2.049 0.339 0.363 2.109 sum 3.287 -15.568 -1.925 16.027 Atomic orbital electron populations 1.69834 1.07527 1.29268 1.35589 1.25900 0.94741 1.01310 0.92340 0.86307 0.80430 0.80630 0.79313 1.19281 1.20334 1.18695 1.19481 0.98131 0.91226 1.40433 0.90482 1.17609 0.91794 0.92141 0.89752 1.20999 0.98508 0.96335 0.99500 1.19848 1.00705 0.90175 1.02787 1.18587 0.97143 0.84607 1.05327 1.85893 1.54581 1.11863 1.70672 1.22970 0.96903 0.85178 0.98595 1.22099 0.83900 0.89218 1.00713 0.87017 1.86767 1.24840 1.96021 1.25772 1.22824 0.96321 0.84199 1.00550 1.47374 1.07475 1.19013 1.34259 1.23724 1.02364 0.92415 1.02323 1.23624 0.88895 1.03132 1.05496 1.75184 1.25645 1.03749 1.09971 1.78518 0.94166 1.12294 1.18706 1.20365 0.97959 0.97706 1.02501 1.20551 1.03198 0.92529 1.05716 0.90811 0.85605 0.88383 0.92293 0.92071 0.77738 0.86304 0.87448 0.79355 0.79490 0.88980 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.33 10.96 55.55 0.61 -19.72 16 2 C 0.07 1.84 5.13 -17.34 -0.09 1.75 16 3 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 7 C -0.46 -12.01 9.04 -37.83 -0.34 -12.35 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 9 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 10 C -0.13 -3.44 8.64 -39.25 -0.34 -3.78 16 11 C -0.12 -2.77 9.92 -39.83 -0.40 -3.16 16 12 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 13 O -0.31 -6.05 10.09 -23.57 -0.24 -6.29 16 14 C 0.04 0.53 4.37 37.16 0.16 0.70 16 15 C 0.10 1.12 3.45 -26.73 -0.09 1.02 16 16 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 17 O -0.53 -7.06 12.34 -40.08 -0.49 -7.55 16 18 C 0.08 0.60 6.14 -4.04 -0.02 0.58 16 19 N -0.29 -2.88 3.44 -61.26 -0.21 -3.09 16 20 C -0.06 -0.46 11.57 -17.05 -0.20 -0.66 16 21 C -0.05 -0.52 12.05 -17.73 -0.21 -0.74 16 22 N -0.28 -3.83 12.41 30.24 0.38 -3.46 16 23 N -0.06 -0.78 12.10 60.35 0.73 -0.04 16 24 C -0.17 -3.54 8.96 -39.83 -0.36 -3.89 16 25 C -0.20 -4.72 9.74 -39.25 -0.38 -5.11 16 26 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 27 H 0.13 3.31 6.16 -52.49 -0.32 2.99 16 28 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 29 H 0.06 0.71 7.64 -51.93 -0.40 0.31 16 30 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 31 H 0.38 3.69 9.05 45.56 0.41 4.10 16 32 H 0.12 0.48 8.07 -51.93 -0.42 0.06 16 33 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.19 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.09 1.61 6.27 -52.49 -0.33 1.28 16 37 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 323.11 15.07 4.87 4.87 Total: -1.00 -33.03 323.11 -6.06 -39.09 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.54 Total: 7.35 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -3.13 Total: -24.46 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 1.50 Total: -26.31 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.73 Total: -13.84 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.03 -6.06 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.309 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds