Wall clock time and date at job start Tue Mar 31 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86800 * 120.00296 * 2 1 4 4 H 1.48497 * 109.47147 * 269.99981 * 3 2 1 5 5 H 1.48498 * 109.47101 * 30.00082 * 3 2 1 6 6 H 1.48505 * 109.47025 * 150.00126 * 3 2 1 7 7 C 1.39893 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99803 * 197.93232 * 7 2 1 9 9 C 1.41212 * 119.99996 * 17.93531 * 7 2 1 10 10 C 1.40837 * 120.17869 * 24.54845 * 9 7 2 11 11 C 1.36440 * 119.81047 * 180.02562 * 10 9 7 12 12 C 1.39312 * 120.18345 * 359.97438 * 11 10 9 13 13 O 1.35674 * 119.81463 * 179.97438 * 12 11 10 14 14 C 1.42906 * 117.00016 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47244 * 180.02562 * 14 13 12 16 16 H 1.09007 * 109.47233 * 55.00161 * 15 14 13 17 17 O 1.42902 * 109.47296 * 295.00371 * 15 14 13 18 18 C 1.53001 * 109.47179 * 174.99886 * 15 14 13 19 19 N 1.46502 * 109.46813 * 184.99973 * 18 15 14 20 20 C 1.35313 * 125.86318 * 125.00922 * 19 18 15 21 21 C 1.35354 * 106.17477 * 179.97438 * 20 19 18 22 22 N 1.33773 * 106.49669 * 359.97438 * 21 20 19 23 23 N 1.28640 * 108.88473 * 359.73392 * 22 21 20 24 24 C 1.39311 * 120.36851 * 0.25952 * 12 11 10 25 25 C 1.36444 * 120.18315 * 359.48017 * 24 12 11 26 26 H 0.97005 * 119.99207 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.09376 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.90667 * 179.97438 * 11 10 9 29 29 H 1.09003 * 109.46798 * 60.00471 * 14 13 12 30 30 H 1.08993 * 109.47176 * 300.00170 * 14 13 12 31 31 H 0.96698 * 113.99860 * 300.00121 * 17 15 14 32 32 H 1.08991 * 109.47059 * 305.00466 * 18 15 14 33 33 H 1.09003 * 109.46676 * 65.00503 * 18 15 14 34 34 H 1.08001 * 126.91114 * 0.02562 * 20 19 18 35 35 H 1.07997 * 126.75153 * 179.97438 * 21 20 19 36 36 H 1.07997 * 119.90612 * 179.72026 * 24 12 11 37 37 H 1.07993 * 120.09139 * 180.26048 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 1.4404 2.6526 0.7000 6 1 3.5405 1.4400 0.7000 7 6 2.0082 -1.2116 0.0005 8 1 3.0488 -1.2342 0.2885 9 6 1.3535 -2.4049 -0.3755 10 6 0.2244 -2.3584 -1.2161 11 6 -0.4026 -3.5160 -1.5743 12 6 0.0713 -4.7415 -1.1114 13 8 -0.5584 -5.8879 -1.4719 14 6 -0.0219 -7.1106 -0.9624 15 6 -0.8573 -8.2861 -1.4732 16 1 -0.9045 -8.2525 -2.5617 17 8 -2.1789 -8.2003 -0.9364 18 6 -0.2116 -9.6009 -1.0312 19 7 -0.9428 -10.7260 -1.6193 20 6 -0.4058 -11.7133 -2.3728 21 6 -1.4296 -12.5349 -2.7029 22 7 -2.5282 -12.0171 -2.1421 23 7 -2.2051 -10.9489 -1.5022 24 6 1.1845 -4.7959 -0.2757 25 6 1.8263 -3.6480 0.0877 26 1 -0.4849 0.8402 -0.0004 27 1 -0.1444 -1.4091 -1.5754 28 1 -1.2688 -3.4821 -2.2185 29 1 -0.0478 -7.0924 0.1272 30 1 1.0083 -7.2237 -1.2996 31 1 -2.2133 -8.2243 0.0297 32 1 0.8254 -9.6268 -1.3656 33 1 -0.2448 -9.6744 0.0559 34 1 0.6312 -11.8240 -2.6535 35 1 -1.3710 -13.4320 -3.3013 36 1 1.5428 -5.7497 0.0824 37 1 2.6917 -3.6923 0.7322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424142418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:34 Heat of formation + Delta-G solvation = 11.218269 kcal Electronic energy + Delta-G solvation = -21540.964928 eV Core-core repulsion = 18092.066563 eV Total energy + Delta-G solvation = -3448.898365 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.12582 -40.66926 -39.00818 -37.71931 -35.28415 -35.17787 -32.14364 -31.88391 -31.35494 -30.83298 -27.91525 -26.49125 -24.14628 -23.49828 -22.72616 -22.33524 -22.18184 -19.28121 -19.13557 -18.28298 -17.90366 -17.14464 -17.08446 -16.86463 -16.02315 -15.81391 -15.71972 -15.47334 -15.15337 -14.90409 -14.44668 -14.08367 -13.93583 -13.58724 -13.48732 -13.05931 -12.81368 -12.66691 -12.57066 -12.40296 -12.19779 -11.81576 -11.74170 -11.60684 -11.46608 -11.15311 -10.89486 -10.84646 -10.26850 -9.55706 -8.92842 -8.59875 -6.23003 0.72174 0.94851 1.03340 1.39796 1.41526 1.52646 1.52816 1.69210 2.22305 2.47217 2.72717 3.31966 3.50620 3.67911 3.70810 3.79806 3.82512 4.04707 4.27515 4.30389 4.33035 4.36984 4.38257 4.44229 4.74671 4.85535 4.91024 5.07133 5.22281 5.28218 5.31537 5.59161 5.63979 5.70204 5.87837 6.06255 6.26483 6.56452 6.73544 6.81960 6.95260 7.10493 7.60684 8.36446 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.061010 B = 0.002515 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.832726 B =11129.467482 C =11375.436323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.054 3.946 10 C -0.155 4.155 11 C -0.137 4.137 12 C 0.002 3.998 13 O -0.334 6.334 14 C 0.031 3.969 15 C 0.108 3.892 16 H 0.093 0.907 17 O -0.560 6.560 18 C 0.087 3.913 19 N -0.288 5.288 20 C -0.038 4.038 21 C -0.071 4.071 22 N -0.325 5.325 23 N -0.107 5.107 24 C -0.161 4.161 25 C -0.207 4.207 26 H 0.287 0.713 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.387 0.613 32 H 0.163 0.837 33 H 0.128 0.872 34 H 0.238 0.762 35 H 0.215 0.785 36 H 0.139 0.861 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.481 -18.397 -1.886 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.528 4.528 8 H 0.096 0.904 9 C 0.052 3.948 10 C -0.175 4.175 11 C -0.156 4.156 12 C -0.042 4.042 13 O -0.250 6.250 14 C -0.045 4.045 15 C 0.048 3.952 16 H 0.111 0.889 17 O -0.367 6.367 18 C -0.034 4.034 19 N -0.082 5.082 20 C -0.189 4.189 21 C -0.228 4.228 22 N -0.190 5.190 23 N -0.086 5.086 24 C -0.179 4.179 25 C -0.226 4.226 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.236 0.764 32 H 0.181 0.819 33 H 0.146 0.854 34 H 0.254 0.746 35 H 0.232 0.768 36 H 0.157 0.843 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.617 -17.723 -1.988 18.197 hybrid contribution 1.285 0.645 0.221 1.455 sum 4.902 -17.078 -1.767 17.855 Atomic orbital electron populations 1.69902 1.09020 1.30412 1.36611 1.26755 0.95461 1.04576 0.91423 0.85204 0.79096 0.76019 0.79392 1.18880 1.19579 1.18004 1.19731 0.98413 0.92373 1.42278 0.90402 1.17966 0.92560 0.93571 0.90727 1.20892 0.99515 0.96308 1.00764 1.20003 1.01101 0.90990 1.03487 1.18626 0.96632 0.85174 1.03768 1.85878 1.55135 1.12883 1.71128 1.23402 0.98501 0.82859 0.99717 1.22023 0.83065 0.90549 0.99602 0.88911 1.86730 1.26664 1.96257 1.27064 1.22997 0.97379 0.81175 1.01836 1.47609 1.06841 1.19716 1.34069 1.24494 1.03980 0.90578 0.99854 1.24271 0.88416 1.04441 1.05722 1.75108 1.28005 1.04623 1.11307 1.78461 0.96225 1.13216 1.20714 1.20730 0.96900 0.98966 1.01300 1.20841 1.03684 0.92510 1.05598 0.90296 0.87565 0.88057 0.90549 0.89318 0.76362 0.81938 0.85388 0.74554 0.76801 0.84321 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.97 10.96 21.82 0.24 -43.73 16 2 C 0.03 1.59 5.13 85.24 0.44 2.03 16 3 Si 0.98 38.03 29.60 68.60 2.03 40.06 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.50 -26.45 9.04 23.40 0.21 -26.24 16 8 H 0.08 3.94 7.91 -2.91 -0.02 3.92 16 9 C 0.05 2.86 5.57 -21.28 -0.12 2.75 16 10 C -0.16 -8.26 8.64 22.49 0.19 -8.07 16 11 C -0.14 -6.64 9.92 22.11 0.22 -6.42 16 12 C 0.00 0.08 6.71 22.79 0.15 0.23 16 13 O -0.33 -12.23 10.09 -85.28 -0.86 -13.09 16 14 C 0.03 0.70 4.37 71.98 0.31 1.02 16 15 C 0.11 2.10 3.45 30.59 0.11 2.21 16 16 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 17 O -0.56 -14.42 12.34 -144.35 -1.78 -16.20 16 18 C 0.09 0.90 6.14 86.38 0.53 1.43 16 19 N -0.29 -4.97 3.44 -347.73 -1.20 -6.17 16 20 C -0.04 -0.46 11.57 83.49 0.97 0.50 16 21 C -0.07 -1.21 12.05 83.73 1.01 -0.20 16 22 N -0.32 -8.81 12.41 -58.25 -0.72 -9.53 16 23 N -0.11 -2.85 12.10 37.02 0.45 -2.40 16 24 C -0.16 -6.39 8.96 22.11 0.20 -6.19 16 25 C -0.21 -9.55 9.74 22.49 0.22 -9.33 16 26 H 0.29 13.74 8.30 -92.70 -0.77 12.97 16 27 H 0.11 5.94 6.16 -2.91 -0.02 5.92 16 28 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 29 H 0.08 1.49 7.64 -2.39 -0.02 1.47 16 30 H 0.09 1.55 7.66 -2.39 -0.02 1.53 16 31 H 0.39 7.22 9.05 -74.06 -0.67 6.55 16 32 H 0.16 0.26 8.07 -2.39 -0.02 0.25 16 33 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.24 0.26 8.06 -2.91 -0.02 0.23 16 35 H 0.22 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.14 4.15 6.27 -2.91 -0.02 4.13 16 37 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 Total: -1.00 -76.71 323.11 3.03 -73.68 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.43 Total: 23.71 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 4.44 Total: -46.31 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -1.23 Total: -61.84 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -2.64 Total: -29.30 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -76.71 3.03 -73.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.894 kcal (2) G-P(sol) polarization free energy of solvation -76.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds