Wall clock time and date at job start Tue Mar 31 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86799 * 119.99634 * 2 1 4 4 H 1.48504 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47070 * 299.99797 * 3 2 1 6 6 H 1.48498 * 109.47116 * 59.99997 * 3 2 1 7 7 C 1.39894 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99671 * 197.95003 * 7 2 1 9 9 C 1.41210 * 119.99749 * 17.94148 * 7 2 1 10 10 C 1.40837 * 120.18354 * 24.55027 * 9 7 2 11 11 C 1.36436 * 119.81205 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18395 * 0.02562 * 11 10 9 13 13 O 1.35684 * 119.81455 * 179.97438 * 12 11 10 14 14 C 1.42899 * 116.99865 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47117 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.46793 * 305.00033 * 15 14 13 17 17 O 1.42898 * 109.47162 * 64.99752 * 15 14 13 18 18 C 1.52996 * 109.47144 * 185.00576 * 15 14 13 19 19 N 1.46499 * 109.47180 * 175.00141 * 18 15 14 20 20 C 1.35312 * 125.87486 * 124.99712 * 19 18 15 21 21 C 1.35344 * 106.17876 * 179.97438 * 20 19 18 22 22 N 1.33775 * 106.49576 * 359.97438 * 21 20 19 23 23 N 1.28632 * 108.88662 * 359.73851 * 22 21 20 24 24 C 1.39306 * 120.36766 * 0.25044 * 12 11 10 25 25 C 1.36441 * 120.18369 * 359.48771 * 24 12 11 26 26 H 0.96989 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.08915 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.90585 * 179.97438 * 11 10 9 29 29 H 1.08997 * 109.47102 * 60.00507 * 14 13 12 30 30 H 1.08997 * 109.47246 * 300.00385 * 14 13 12 31 31 H 0.96701 * 113.99651 * 60.00471 * 17 15 14 32 32 H 1.09009 * 109.46971 * 294.99337 * 18 15 14 33 33 H 1.08998 * 109.47428 * 54.99205 * 18 15 14 34 34 H 1.08002 * 126.90609 * 0.02562 * 20 19 18 35 35 H 1.08001 * 126.75491 * 179.97438 * 21 20 19 36 36 H 1.08009 * 119.90996 * 179.72496 * 24 12 11 37 37 H 1.08002 * 120.09435 * 180.26002 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0084 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2877 9 6 1.3538 -2.4045 -0.3778 10 6 0.2248 -2.3573 -1.2185 11 6 -0.4021 -3.5146 -1.5778 12 6 0.0712 -4.7404 -1.1151 13 8 -0.5583 -5.8867 -1.4767 14 6 -0.0219 -7.1097 -0.9683 15 6 -0.8571 -8.2849 -1.4803 16 1 -1.9037 -8.1277 -1.2195 17 8 -0.7289 -8.3774 -2.9005 18 6 -0.3607 -9.5816 -0.8378 19 7 -1.2342 -10.6888 -1.2345 20 6 -0.8369 -11.8402 -1.8240 21 6 -1.9586 -12.5737 -2.0127 22 7 -2.9738 -11.8451 -1.5352 23 7 -2.5107 -10.7363 -1.0760 24 6 1.1838 -4.7955 -0.2786 25 6 1.8255 -3.6478 0.0858 26 1 -0.4850 0.8399 -0.0004 27 1 -0.1440 -1.4077 -1.5769 28 1 -1.2682 -3.4802 -2.2220 29 1 -0.0478 -7.0926 0.1213 30 1 1.0085 -7.2224 -1.3055 31 1 0.1781 -8.5178 -3.2052 32 1 0.6574 -9.7851 -1.1699 33 1 -0.3750 -9.4782 0.2472 34 1 0.1724 -12.1182 -2.0896 35 1 -2.0216 -13.5544 -2.4606 36 1 1.5418 -5.7496 0.0793 37 1 2.6905 -3.6925 0.7310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424142423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:37 Heat of formation + Delta-G solvation = 33.863119 kcal Electronic energy + Delta-G solvation = -21526.757524 eV Core-core repulsion = 18078.841114 eV Total energy + Delta-G solvation = -3447.916410 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.42524 -39.24762 -37.85010 -36.22672 -34.55842 -33.38992 -31.26851 -30.98428 -29.74180 -29.08425 -26.92019 -24.77323 -23.26620 -22.69091 -21.60618 -20.80678 -20.69215 -18.24686 -17.43581 -17.07654 -16.74064 -16.63933 -16.01631 -15.27830 -15.13617 -14.74871 -14.54036 -14.11859 -13.99491 -13.76310 -13.01135 -12.81687 -12.40414 -12.23010 -11.96331 -11.83303 -11.61360 -11.32426 -11.20761 -11.08263 -10.98618 -10.73332 -10.61683 -10.13284 -10.02875 -9.88597 -9.58754 -9.41730 -9.08437 -7.71854 -7.11408 -6.78251 -4.31915 1.38844 2.01194 2.41256 2.70999 2.87853 3.05666 3.10371 3.15189 3.54422 3.85924 3.90917 4.21302 4.29379 4.53118 4.57042 4.72525 4.75285 4.86933 4.99567 5.00888 5.38707 5.41589 5.59740 5.73630 5.94442 5.95243 6.14631 6.29334 6.64575 6.90591 7.03860 7.11734 7.32294 7.39748 7.48652 7.70433 7.94400 8.13611 8.32399 8.35890 8.58025 8.83813 8.91447 10.16244 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.060188 B = 0.002508 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.093561 B =11162.511250 C =11329.965376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.134 4.134 11 C -0.116 4.116 12 C -0.014 4.014 13 O -0.314 6.314 14 C 0.042 3.958 15 C 0.098 3.902 16 H 0.125 0.875 17 O -0.542 6.542 18 C 0.084 3.916 19 N -0.281 5.281 20 C -0.050 4.050 21 C -0.054 4.054 22 N -0.273 5.273 23 N -0.078 5.078 24 C -0.167 4.167 25 C -0.200 4.200 26 H 0.280 0.720 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.372 0.628 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.189 0.811 35 H 0.189 0.811 36 H 0.092 0.908 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.185 -17.305 -2.267 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.153 4.153 11 C -0.135 4.135 12 C -0.057 4.057 13 O -0.230 6.230 14 C -0.036 4.036 15 C 0.038 3.962 16 H 0.142 0.858 17 O -0.346 6.346 18 C -0.038 4.038 19 N -0.075 5.075 20 C -0.200 4.200 21 C -0.212 4.212 22 N -0.139 5.139 23 N -0.058 5.058 24 C -0.185 4.185 25 C -0.220 4.220 26 H 0.091 0.909 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.206 0.794 35 H 0.206 0.794 36 H 0.110 0.890 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.936 -16.301 -1.814 16.428 hybrid contribution 2.328 0.084 -0.072 2.331 sum 3.265 -16.217 -1.886 16.649 Atomic orbital electron populations 1.69835 1.07535 1.29182 1.35682 1.25901 0.94732 1.01319 0.92336 0.86277 0.80937 0.81027 0.78574 1.18466 1.19687 1.20038 1.19500 0.98134 0.91233 1.40341 0.90462 1.17612 0.91785 0.92150 0.89768 1.20997 0.98493 0.96341 0.99499 1.19846 1.00755 0.90169 1.02733 1.18587 0.97251 0.84589 1.05227 1.85897 1.54454 1.11819 1.70827 1.22945 0.96619 0.85146 0.98849 1.22234 1.02958 0.89505 0.81501 0.85761 1.86751 1.32901 1.95171 1.19765 1.22805 0.92886 0.84989 1.03097 1.47272 1.07200 1.14061 1.38920 1.23661 1.02658 0.88349 1.05379 1.23610 0.88653 1.02651 1.06239 1.75135 1.26819 0.99351 1.12594 1.78336 0.91227 1.16588 1.19656 1.20364 0.97985 0.97712 1.02474 1.20551 1.03210 0.92530 1.05690 0.90866 0.85602 0.88369 0.91780 0.92459 0.78055 0.86849 0.86760 0.79381 0.79438 0.88981 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.36 10.96 55.55 0.61 -19.75 16 2 C 0.07 1.84 5.13 -17.34 -0.09 1.75 16 3 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -12.01 9.04 -37.83 -0.34 -12.36 16 8 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 9 C 0.09 2.33 5.57 -106.81 -0.60 1.73 16 10 C -0.13 -3.44 8.64 -39.25 -0.34 -3.78 16 11 C -0.12 -2.77 9.92 -39.83 -0.40 -3.17 16 12 C -0.01 -0.30 6.71 -38.79 -0.26 -0.56 16 13 O -0.31 -6.10 10.09 -23.61 -0.24 -6.34 16 14 C 0.04 0.55 4.37 37.16 0.16 0.71 16 15 C 0.10 1.10 3.33 -26.73 -0.09 1.01 16 16 H 0.12 1.69 8.01 -51.93 -0.42 1.28 16 17 O -0.54 -6.66 13.25 -40.09 -0.53 -7.19 16 18 C 0.08 0.62 6.09 -4.04 -0.02 0.59 16 19 N -0.28 -2.83 3.38 -61.26 -0.21 -3.04 16 20 C -0.05 -0.39 11.57 -17.05 -0.20 -0.59 16 21 C -0.05 -0.52 12.05 -17.74 -0.21 -0.73 16 22 N -0.27 -3.75 12.41 30.23 0.38 -3.38 16 23 N -0.08 -1.08 12.84 60.35 0.77 -0.30 16 24 C -0.17 -3.55 8.96 -39.83 -0.36 -3.91 16 25 C -0.20 -4.73 9.74 -39.25 -0.38 -5.12 16 26 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 27 H 0.13 3.32 6.16 -52.49 -0.32 3.00 16 28 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 29 H 0.06 0.78 7.63 -51.93 -0.40 0.39 16 30 H 0.06 0.65 7.66 -51.93 -0.40 0.26 16 31 H 0.37 2.93 9.05 45.56 0.41 3.34 16 32 H 0.11 0.41 8.07 -51.92 -0.42 0.00 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.19 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.19 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.09 1.62 6.27 -52.48 -0.33 1.29 16 37 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -33.28 324.40 -6.02 -39.30 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.53 Total: 6.91 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -3.12 Total: -24.41 kcal Atomic # 7 Polarization: -28.03 SS G_CDS: 1.55 Total: -26.47 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: -0.77 Total: -13.53 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.28 -6.02 -39.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.160 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds