Wall clock time and date at job start Tue Mar 31 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86799 * 119.99634 * 2 1 4 4 H 1.48504 * 109.47085 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47070 * 299.99797 * 3 2 1 6 6 H 1.48498 * 109.47116 * 59.99997 * 3 2 1 7 7 C 1.39894 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99671 * 197.95003 * 7 2 1 9 9 C 1.41210 * 119.99749 * 17.94148 * 7 2 1 10 10 C 1.40837 * 120.18354 * 24.55027 * 9 7 2 11 11 C 1.36436 * 119.81205 * 180.02562 * 10 9 7 12 12 C 1.39311 * 120.18395 * 0.02562 * 11 10 9 13 13 O 1.35684 * 119.81455 * 179.97438 * 12 11 10 14 14 C 1.42899 * 116.99865 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47117 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.46793 * 305.00033 * 15 14 13 17 17 O 1.42898 * 109.47162 * 64.99752 * 15 14 13 18 18 C 1.52996 * 109.47144 * 185.00576 * 15 14 13 19 19 N 1.46499 * 109.47180 * 175.00141 * 18 15 14 20 20 C 1.35312 * 125.87486 * 124.99712 * 19 18 15 21 21 C 1.35344 * 106.17876 * 179.97438 * 20 19 18 22 22 N 1.33775 * 106.49576 * 359.97438 * 21 20 19 23 23 N 1.28632 * 108.88662 * 359.73851 * 22 21 20 24 24 C 1.39306 * 120.36766 * 0.25044 * 12 11 10 25 25 C 1.36441 * 120.18369 * 359.48771 * 24 12 11 26 26 H 0.96989 * 120.00124 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.08915 * 359.97438 * 10 9 7 28 28 H 1.07994 * 119.90585 * 179.97438 * 11 10 9 29 29 H 1.08997 * 109.47102 * 60.00507 * 14 13 12 30 30 H 1.08997 * 109.47246 * 300.00385 * 14 13 12 31 31 H 0.96701 * 113.99651 * 60.00471 * 17 15 14 32 32 H 1.09009 * 109.46971 * 294.99337 * 18 15 14 33 33 H 1.08998 * 109.47428 * 54.99205 * 18 15 14 34 34 H 1.08002 * 126.90609 * 0.02562 * 20 19 18 35 35 H 1.08001 * 126.75491 * 179.97438 * 21 20 19 36 36 H 1.08009 * 119.90996 * 179.72496 * 24 12 11 37 37 H 1.08002 * 120.09435 * 180.26002 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7028 1.3465 0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3965 1.2125 7 6 2.0084 -1.2115 -0.0005 8 1 3.0489 -1.2343 0.2877 9 6 1.3538 -2.4045 -0.3778 10 6 0.2248 -2.3573 -1.2185 11 6 -0.4021 -3.5146 -1.5778 12 6 0.0712 -4.7404 -1.1151 13 8 -0.5583 -5.8867 -1.4767 14 6 -0.0219 -7.1097 -0.9683 15 6 -0.8571 -8.2849 -1.4803 16 1 -1.9037 -8.1277 -1.2195 17 8 -0.7289 -8.3774 -2.9005 18 6 -0.3607 -9.5816 -0.8378 19 7 -1.2342 -10.6888 -1.2345 20 6 -0.8369 -11.8402 -1.8240 21 6 -1.9586 -12.5737 -2.0127 22 7 -2.9738 -11.8451 -1.5352 23 7 -2.5107 -10.7363 -1.0760 24 6 1.1838 -4.7955 -0.2786 25 6 1.8255 -3.6478 0.0858 26 1 -0.4850 0.8399 -0.0004 27 1 -0.1440 -1.4077 -1.5769 28 1 -1.2682 -3.4802 -2.2220 29 1 -0.0478 -7.0926 0.1213 30 1 1.0085 -7.2224 -1.3055 31 1 0.1781 -8.5178 -3.2052 32 1 0.6574 -9.7851 -1.1699 33 1 -0.3750 -9.4782 0.2472 34 1 0.1724 -12.1182 -2.0896 35 1 -2.0216 -13.5544 -2.4606 36 1 1.5418 -5.7496 0.0793 37 1 2.6905 -3.6925 0.7310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424142423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:37 Heat of formation + Delta-G solvation = 9.334403 kcal Electronic energy + Delta-G solvation = -21527.821169 eV Core-core repulsion = 18078.841114 eV Total energy + Delta-G solvation = -3448.980055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.15081 -40.68513 -39.06429 -37.75481 -35.32793 -35.18869 -32.18683 -31.91591 -31.36042 -30.83890 -27.93846 -26.50159 -24.25421 -23.49313 -22.73383 -22.34969 -22.15137 -19.29716 -19.16819 -18.30876 -17.64484 -17.53000 -17.12447 -16.90039 -16.00161 -15.78801 -15.71831 -15.56367 -15.19729 -14.85391 -14.52210 -14.09444 -13.94570 -13.63384 -13.44143 -13.09914 -12.81479 -12.68556 -12.60018 -12.39435 -12.27380 -11.83756 -11.71482 -11.66141 -11.57379 -11.17117 -10.88943 -10.86285 -10.29070 -9.56047 -8.93213 -8.60158 -6.23111 0.69977 0.94217 1.02984 1.39792 1.40152 1.50709 1.54955 1.67721 2.22308 2.46552 2.72341 3.20265 3.53811 3.67347 3.69879 3.72507 3.83306 4.05780 4.27397 4.30656 4.31175 4.36596 4.37122 4.43826 4.67254 4.86832 4.93651 5.06925 5.21897 5.27995 5.31015 5.58671 5.63700 5.68540 5.87494 6.06135 6.26139 6.56146 6.70064 6.81307 6.95091 7.10053 7.56391 8.36387 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.060188 B = 0.002508 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.093561 B =11162.511250 C =11329.965376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.497 4.497 8 H 0.078 0.922 9 C 0.054 3.946 10 C -0.155 4.155 11 C -0.137 4.137 12 C 0.001 3.999 13 O -0.335 6.335 14 C 0.032 3.968 15 C 0.108 3.892 16 H 0.089 0.911 17 O -0.567 6.567 18 C 0.087 3.913 19 N -0.282 5.282 20 C -0.028 4.028 21 C -0.071 4.071 22 N -0.318 5.318 23 N -0.133 5.133 24 C -0.160 4.160 25 C -0.207 4.207 26 H 0.287 0.713 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.392 0.608 32 H 0.164 0.836 33 H 0.130 0.870 34 H 0.240 0.760 35 H 0.217 0.783 36 H 0.139 0.861 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 -19.349 -2.128 20.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.527 4.527 8 H 0.096 0.904 9 C 0.052 3.948 10 C -0.175 4.175 11 C -0.156 4.156 12 C -0.043 4.043 13 O -0.251 6.251 14 C -0.044 4.044 15 C 0.048 3.952 16 H 0.107 0.893 17 O -0.375 6.375 18 C -0.033 4.033 19 N -0.075 5.075 20 C -0.179 4.179 21 C -0.229 4.229 22 N -0.183 5.183 23 N -0.113 5.113 24 C -0.179 4.179 25 C -0.226 4.226 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.242 0.758 32 H 0.182 0.818 33 H 0.148 0.852 34 H 0.257 0.743 35 H 0.233 0.767 36 H 0.157 0.843 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.501 -18.362 -1.667 18.767 hybrid contribution 1.514 0.455 -0.181 1.592 sum 5.016 -17.907 -1.848 18.688 Atomic orbital electron populations 1.69901 1.09036 1.30379 1.36661 1.26760 0.95456 1.04600 0.91417 0.85166 0.79512 0.76316 0.78750 1.17944 1.19177 1.19279 1.19747 0.98407 0.92376 1.42178 0.90391 1.17970 0.92541 0.93586 0.90729 1.20888 0.99506 0.96296 1.00766 1.20002 1.01146 0.90994 1.03439 1.18631 0.96761 0.85144 1.03729 1.85882 1.55082 1.12871 1.71252 1.23385 0.98357 0.82831 0.99864 1.22001 1.00943 0.90891 0.81403 0.89346 1.86715 1.34948 1.95336 1.20478 1.22991 0.94262 0.82258 1.03809 1.47505 1.06511 1.15127 1.38404 1.24466 1.04258 0.86659 1.02535 1.24284 0.88504 1.03873 1.06257 1.75057 1.29076 1.00249 1.13959 1.78284 0.93345 1.17401 1.22221 1.20731 0.96912 0.98992 1.01254 1.20843 1.03704 0.92498 1.05572 0.90294 0.87551 0.88069 0.90274 0.89429 0.75793 0.81831 0.85208 0.74330 0.76679 0.84310 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.07 10.96 21.82 0.24 -43.83 16 2 C 0.03 1.58 5.13 85.23 0.44 2.02 16 3 Si 0.98 38.10 29.60 68.60 2.03 40.13 16 4 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 6 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.50 -26.47 9.04 23.40 0.21 -26.26 16 8 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16 9 C 0.05 2.87 5.57 -21.28 -0.12 2.75 16 10 C -0.15 -8.28 8.64 22.48 0.19 -8.09 16 11 C -0.14 -6.68 9.92 22.11 0.22 -6.46 16 12 C 0.00 0.05 6.71 22.79 0.15 0.20 16 13 O -0.33 -12.45 10.09 -85.38 -0.86 -13.31 16 14 C 0.03 0.73 4.37 71.98 0.31 1.04 16 15 C 0.11 2.16 3.33 30.59 0.10 2.26 16 16 H 0.09 2.42 8.01 -2.39 -0.02 2.40 16 17 O -0.57 -12.68 13.25 -144.34 -1.91 -14.59 16 18 C 0.09 0.93 6.09 86.38 0.53 1.45 16 19 N -0.28 -4.93 3.38 -347.74 -1.18 -6.10 16 20 C -0.03 -0.33 11.57 83.49 0.97 0.64 16 21 C -0.07 -1.21 12.05 83.73 1.01 -0.20 16 22 N -0.32 -8.71 12.41 -58.26 -0.72 -9.43 16 23 N -0.13 -3.65 12.84 37.02 0.48 -3.18 16 24 C -0.16 -6.43 8.96 22.11 0.20 -6.23 16 25 C -0.21 -9.58 9.74 22.49 0.22 -9.36 16 26 H 0.29 13.73 8.30 -92.72 -0.77 12.96 16 27 H 0.11 5.97 6.16 -2.91 -0.02 5.95 16 28 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 29 H 0.08 1.61 7.63 -2.39 -0.02 1.59 16 30 H 0.09 1.52 7.66 -2.39 -0.02 1.50 16 31 H 0.39 4.76 9.05 -74.06 -0.67 4.09 16 32 H 0.16 0.09 8.07 -2.38 -0.02 0.08 16 33 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.24 0.07 8.06 -2.91 -0.02 0.04 16 35 H 0.22 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.14 4.18 6.27 -2.91 -0.02 4.16 16 37 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -78.05 324.40 2.94 -75.11 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.43 Total: 21.45 kcal Atomic # 6 Polarization: -50.67 SS G_CDS: 4.43 Total: -46.24 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -1.19 Total: -62.55 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -2.77 Total: -27.90 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -78.05 2.94 -75.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.442 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds