Wall clock time and date at job start Tue Mar 31 2020 02:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48505 * 109.46935 * 239.99946 * 3 2 1 5 5 H 1.48493 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47031 * 120.00586 * 3 2 1 7 7 C 1.37876 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99473 * 175.25034 * 7 2 1 9 9 C 1.50695 * 120.00418 * 355.53021 * 7 2 1 10 10 C 1.53001 * 115.55227 * 274.91850 * 9 7 2 11 11 N 1.46503 * 109.46655 * 304.39687 * 10 9 7 12 12 C 1.34774 * 119.99726 * 184.71735 * 11 10 9 13 13 O 1.21358 * 120.00169 * 4.99141 * 12 11 10 14 14 C 1.49359 * 119.99787 * 184.99911 * 12 11 10 15 15 O 1.21376 * 120.00188 * 5.09645 * 14 12 11 16 16 N 1.34778 * 119.99843 * 185.10634 * 14 12 11 17 17 C 1.39752 * 119.99932 * 184.78679 * 16 14 12 18 18 C 1.39337 * 120.49242 * 325.19847 * 17 16 14 19 19 C 1.38488 * 118.35236 * 179.71461 * 18 17 16 20 20 C 1.38283 * 119.24410 * 0.60266 * 19 18 17 21 21 N 1.31860 * 120.92990 * 359.65968 * 20 19 18 22 22 C 1.31815 * 121.80210 * 0.02562 * 21 20 19 23 23 C 1.53002 * 117.50106 * 129.24440 * 9 7 2 24 24 C 1.53006 * 117.49677 * 60.58554 * 9 7 2 25 25 H 0.96996 * 119.99987 * 4.99713 * 1 2 3 26 26 H 1.09003 * 109.46924 * 64.39212 * 10 9 7 27 27 H 1.08997 * 109.47209 * 184.39470 * 10 9 7 28 28 H 0.96993 * 120.00178 * 4.71156 * 11 10 9 29 29 H 0.97008 * 120.00015 * 4.78296 * 16 14 12 30 30 H 1.08002 * 120.81881 * 359.97438 * 18 17 16 31 31 H 1.08003 * 120.37714 * 180.26002 * 19 18 17 32 32 H 1.08000 * 119.53259 * 179.67844 * 20 19 18 33 33 H 1.08000 * 119.66874 * 180.02562 * 22 21 20 34 34 H 1.09001 * 117.49573 * 359.97438 * 23 9 7 35 35 H 1.09001 * 117.50036 * 145.02343 * 23 9 7 36 36 H 1.08998 * 117.49647 * 214.98130 * 24 9 7 37 37 H 1.08993 * 117.49857 * 359.97416 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0817 -1.1956 -0.0780 9 6 1.2545 -2.4972 0.1006 10 6 0.9165 -2.9557 1.5206 11 7 2.1453 -3.0307 2.3149 12 6 2.1047 -3.5052 3.5757 13 8 1.0695 -3.9544 4.0220 14 6 3.3340 -3.4782 4.4237 15 8 4.3439 -2.9456 4.0117 16 7 3.3218 -4.0452 5.6463 17 6 4.4382 -3.9333 6.4795 18 6 5.7238 -3.9298 5.9424 19 6 6.7980 -3.8107 6.8083 20 6 6.5625 -3.7127 8.1674 21 7 5.3335 -3.7246 8.6449 22 6 4.2827 -3.8300 7.8560 23 6 1.5744 -3.5786 -0.9335 24 6 0.2467 -2.8199 -1.0046 25 1 -0.4850 0.8368 -0.0732 26 1 0.2306 -2.2431 1.9789 27 1 0.4476 -3.9389 1.4831 28 1 2.9879 -2.7388 1.9334 29 1 2.5382 -4.5310 5.9479 30 1 5.8786 -4.0136 4.8768 31 1 7.8084 -3.8001 6.4270 32 1 7.3970 -3.6249 8.8474 33 1 3.2912 -3.8357 8.2841 34 1 2.3270 -3.3472 -1.6872 35 1 1.5437 -4.6166 -0.6023 36 1 -0.6568 -3.3591 -0.7200 37 1 0.1260 -2.0894 -1.8044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430350831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:54 Heat of formation + Delta-G solvation = -3.817032 kcal Electronic energy + Delta-G solvation = -21996.072882 eV Core-core repulsion = 18546.522537 eV Total energy + Delta-G solvation = -3449.550344 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16572 -39.83073 -38.34567 -36.81324 -35.48423 -33.47135 -32.35047 -32.04102 -30.33147 -27.22273 -25.59070 -24.57497 -23.89067 -22.39463 -21.20791 -20.12720 -19.65527 -18.54836 -17.52778 -17.17751 -16.49860 -16.16897 -16.06640 -15.50910 -14.91878 -14.69770 -14.33529 -14.19379 -13.99137 -13.77507 -13.27512 -13.23869 -12.78978 -12.40171 -12.03839 -11.70738 -11.47055 -11.14474 -11.04814 -10.99289 -10.58844 -10.30340 -9.97079 -9.88466 -9.64831 -9.29893 -9.14717 -8.65273 -8.59568 -8.49111 -8.21540 -6.14875 -4.25589 0.72264 1.05875 1.63451 2.37892 3.24738 3.30261 3.33318 3.34015 3.62181 3.77932 4.28837 4.30946 4.60205 4.67516 4.77077 4.87740 5.11003 5.12764 5.26347 5.37248 5.79133 5.88479 5.94490 5.96626 6.19804 6.33694 6.38527 6.49949 6.58982 6.68152 6.81112 6.96825 7.02567 7.23050 7.43152 7.58787 7.71841 7.74759 7.95663 8.23616 8.37117 8.76761 9.43077 10.91986 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.003787 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.335209 B = 7392.290067 C = 8082.443854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.021 3.979 10 C 0.158 3.842 11 N -0.658 5.658 12 C 0.498 3.502 13 O -0.537 6.537 14 C 0.510 3.490 15 O -0.497 6.497 16 N -0.647 5.647 17 C 0.097 3.903 18 C -0.079 4.079 19 C -0.152 4.152 20 C 0.078 3.922 21 N -0.467 5.467 22 C 0.080 3.920 23 C -0.210 4.210 24 C -0.139 4.139 25 H 0.263 0.737 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.416 0.584 29 H 0.425 0.575 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.157 0.843 33 H 0.160 0.840 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -8.619 11.004 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.020 3.980 10 C 0.036 3.964 11 N -0.308 5.308 12 C 0.276 3.724 13 O -0.416 6.416 14 C 0.293 3.707 15 O -0.370 6.370 16 N -0.295 5.295 17 C 0.000 4.000 18 C -0.107 4.107 19 C -0.172 4.172 20 C -0.080 4.080 21 N -0.176 5.176 22 C -0.080 4.080 23 C -0.247 4.247 24 C -0.177 4.177 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.253 0.747 29 H 0.264 0.736 30 H 0.170 0.830 31 H 0.157 0.843 32 H 0.174 0.826 33 H 0.177 0.823 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.280 -8.296 11.892 16.697 hybrid contribution 0.500 0.900 -1.036 1.461 sum 8.780 -7.396 10.856 15.800 Atomic orbital electron populations 1.69970 1.05897 1.27154 1.47944 1.24980 0.94830 0.99030 0.94038 0.86686 0.79710 0.82986 0.78858 1.20140 1.21214 1.20002 1.20322 0.92748 0.88466 1.52708 0.92019 1.19011 0.99797 0.93612 0.85587 1.21212 0.83972 0.99071 0.92152 1.45888 1.14468 1.59056 1.11398 1.19607 0.87783 0.81233 0.83733 1.90738 1.31675 1.46473 1.72730 1.20795 0.89548 0.78217 0.82147 1.90763 1.33192 1.41680 1.71319 1.43108 1.17445 1.53621 1.15281 1.18869 0.87689 1.02014 0.91400 1.21839 0.90539 0.96195 1.02149 1.22116 1.00088 1.00710 0.94317 1.22749 0.94387 0.97075 0.93768 1.67667 0.99198 1.11544 1.39147 1.22669 0.98690 0.98409 0.88234 1.23072 1.00729 0.95497 1.05444 1.22470 0.90796 1.01279 1.03205 0.92713 0.90739 0.93200 0.74682 0.73624 0.83046 0.84291 0.82558 0.82283 0.90215 0.91616 0.91698 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.52 12.65 55.43 0.70 -22.82 16 2 C 0.08 1.97 5.43 -17.82 -0.10 1.87 16 3 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.51 -12.68 8.13 -34.44 -0.28 -12.96 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.02 0.47 1.61 -155.66 -0.25 0.22 16 10 C 0.16 3.36 5.58 -4.04 -0.02 3.34 16 11 N -0.66 -12.60 5.40 -60.76 -0.33 -12.93 16 12 C 0.50 8.79 7.88 -11.63 -0.09 8.69 16 13 O -0.54 -10.20 16.48 5.49 0.09 -10.11 16 14 C 0.51 7.87 7.74 -11.63 -0.09 7.78 16 15 O -0.50 -8.48 13.96 5.47 0.08 -8.41 16 16 N -0.65 -7.93 5.33 -10.20 -0.05 -7.99 16 17 C 0.10 1.16 6.32 -83.59 -0.53 0.63 16 18 C -0.08 -0.94 8.81 -39.08 -0.34 -1.28 16 19 C -0.15 -1.45 10.10 -39.47 -0.40 -1.85 16 20 C 0.08 0.75 11.18 -17.52 -0.20 0.55 16 21 N -0.47 -5.36 10.35 -13.07 -0.14 -5.50 16 22 C 0.08 0.87 11.13 -17.31 -0.19 0.68 16 23 C -0.21 -4.23 9.93 -26.69 -0.27 -4.50 16 24 C -0.14 -3.06 9.17 -26.69 -0.24 -3.30 16 25 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 26 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 27 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 28 H 0.42 7.94 7.49 -40.82 -0.31 7.63 16 29 H 0.43 4.37 8.32 -40.82 -0.34 4.03 16 30 H 0.15 1.91 6.30 -52.49 -0.33 1.57 16 31 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 329.24 15.07 4.96 4.96 Total: -1.00 -29.08 329.24 -7.03 -36.11 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -4.32 Total: 11.42 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.00 Total: -0.14 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.18 Total: -49.23 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.17 Total: -18.51 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.08 -7.03 -36.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430350831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.294 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds