Wall clock time and date at job start Tue Mar 31 2020 02:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99748 * 2 1 4 4 H 1.48505 * 109.46935 * 239.99946 * 3 2 1 5 5 H 1.48493 * 109.47219 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47031 * 120.00586 * 3 2 1 7 7 C 1.37876 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99473 * 175.25034 * 7 2 1 9 9 C 1.50695 * 120.00418 * 355.53021 * 7 2 1 10 10 C 1.53001 * 115.55227 * 274.91850 * 9 7 2 11 11 N 1.46503 * 109.46655 * 304.39687 * 10 9 7 12 12 C 1.34774 * 119.99726 * 184.71735 * 11 10 9 13 13 O 1.21358 * 120.00169 * 4.99141 * 12 11 10 14 14 C 1.49359 * 119.99787 * 184.99911 * 12 11 10 15 15 O 1.21376 * 120.00188 * 5.09645 * 14 12 11 16 16 N 1.34778 * 119.99843 * 185.10634 * 14 12 11 17 17 C 1.39752 * 119.99932 * 184.78679 * 16 14 12 18 18 C 1.39337 * 120.49242 * 325.19847 * 17 16 14 19 19 C 1.38488 * 118.35236 * 179.71461 * 18 17 16 20 20 C 1.38283 * 119.24410 * 0.60266 * 19 18 17 21 21 N 1.31860 * 120.92990 * 359.65968 * 20 19 18 22 22 C 1.31815 * 121.80210 * 0.02562 * 21 20 19 23 23 C 1.53002 * 117.50106 * 129.24440 * 9 7 2 24 24 C 1.53006 * 117.49677 * 60.58554 * 9 7 2 25 25 H 0.96996 * 119.99987 * 4.99713 * 1 2 3 26 26 H 1.09003 * 109.46924 * 64.39212 * 10 9 7 27 27 H 1.08997 * 109.47209 * 184.39470 * 10 9 7 28 28 H 0.96993 * 120.00178 * 4.71156 * 11 10 9 29 29 H 0.97008 * 120.00015 * 4.78296 * 16 14 12 30 30 H 1.08002 * 120.81881 * 359.97438 * 18 17 16 31 31 H 1.08003 * 120.37714 * 180.26002 * 19 18 17 32 32 H 1.08000 * 119.53259 * 179.67844 * 20 19 18 33 33 H 1.08000 * 119.66874 * 180.02562 * 22 21 20 34 34 H 1.09001 * 117.49573 * 359.97438 * 23 9 7 35 35 H 1.09001 * 117.50036 * 145.02343 * 23 9 7 36 36 H 1.08998 * 117.49647 * 214.98130 * 24 9 7 37 37 H 1.08993 * 117.49857 * 359.97416 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0817 -1.1956 -0.0780 9 6 1.2545 -2.4972 0.1006 10 6 0.9165 -2.9557 1.5206 11 7 2.1453 -3.0307 2.3149 12 6 2.1047 -3.5052 3.5757 13 8 1.0695 -3.9544 4.0220 14 6 3.3340 -3.4782 4.4237 15 8 4.3439 -2.9456 4.0117 16 7 3.3218 -4.0452 5.6463 17 6 4.4382 -3.9333 6.4795 18 6 5.7238 -3.9298 5.9424 19 6 6.7980 -3.8107 6.8083 20 6 6.5625 -3.7127 8.1674 21 7 5.3335 -3.7246 8.6449 22 6 4.2827 -3.8300 7.8560 23 6 1.5744 -3.5786 -0.9335 24 6 0.2467 -2.8199 -1.0046 25 1 -0.4850 0.8368 -0.0732 26 1 0.2306 -2.2431 1.9789 27 1 0.4476 -3.9389 1.4831 28 1 2.9879 -2.7388 1.9334 29 1 2.5382 -4.5310 5.9479 30 1 5.8786 -4.0136 4.8768 31 1 7.8084 -3.8001 6.4270 32 1 7.3970 -3.6249 8.8474 33 1 3.2912 -3.8357 8.2841 34 1 2.3270 -3.3472 -1.6872 35 1 1.5437 -4.6166 -0.6023 36 1 -0.6568 -3.3591 -0.7200 37 1 0.1260 -2.0894 -1.8044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430350831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:39:54 Heat of formation + Delta-G solvation = -23.504530 kcal Electronic energy + Delta-G solvation = -21996.926596 eV Core-core repulsion = 18546.522537 eV Total energy + Delta-G solvation = -3450.404058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.26832 -40.93569 -39.66457 -38.49277 -36.58962 -34.99917 -33.98343 -33.17181 -31.25367 -28.77714 -27.45792 -25.79657 -24.76163 -23.47245 -22.88461 -21.51239 -21.24214 -19.88874 -18.67554 -18.07510 -17.97438 -17.45974 -17.33068 -16.77899 -16.65140 -16.27184 -15.65495 -15.41927 -15.07041 -14.87542 -14.70959 -14.47946 -14.16970 -13.73473 -13.53313 -13.21273 -12.96547 -12.83727 -12.75734 -12.40377 -12.13839 -12.00853 -11.44325 -11.05659 -10.96676 -10.74113 -10.47431 -10.40690 -10.18213 -9.93587 -9.50480 -8.11952 -6.25834 -0.22542 0.21832 0.45346 1.16608 1.41283 1.44361 1.49367 2.02468 2.40136 2.53969 2.80431 3.15499 3.29913 3.54696 3.58389 3.80912 3.92748 4.08599 4.19421 4.27729 4.50150 4.63633 4.64618 4.67450 4.91156 4.95273 5.02893 5.06033 5.15611 5.27487 5.29847 5.50096 5.64887 5.69517 5.75974 5.84135 6.32976 6.35594 6.60132 6.81422 6.89164 6.92140 7.44498 8.94280 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.003787 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.335209 B = 7392.290067 C = 8082.443854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.032 3.968 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.059 0.941 9 C -0.003 4.003 10 C 0.173 3.827 11 N -0.664 5.664 12 C 0.501 3.499 13 O -0.550 6.550 14 C 0.517 3.483 15 O -0.517 6.517 16 N -0.628 5.628 17 C 0.076 3.924 18 C -0.094 4.094 19 C -0.148 4.148 20 C 0.081 3.919 21 N -0.487 5.487 22 C 0.081 3.919 23 C -0.182 4.182 24 C -0.147 4.147 25 H 0.260 0.740 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.416 0.584 29 H 0.434 0.566 30 H 0.140 0.860 31 H 0.167 0.833 32 H 0.189 0.811 33 H 0.179 0.821 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.283 -9.357 12.193 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.170 4.170 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.077 0.923 9 C -0.003 4.003 10 C 0.050 3.950 11 N -0.313 5.313 12 C 0.281 3.719 13 O -0.430 6.430 14 C 0.299 3.701 15 O -0.391 6.391 16 N -0.276 5.276 17 C -0.020 4.020 18 C -0.122 4.122 19 C -0.168 4.168 20 C -0.076 4.076 21 N -0.196 5.196 22 C -0.078 4.078 23 C -0.219 4.219 24 C -0.185 4.185 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.253 0.747 29 H 0.274 0.726 30 H 0.158 0.842 31 H 0.185 0.815 32 H 0.206 0.794 33 H 0.196 0.804 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.915 -9.058 13.112 18.769 hybrid contribution 0.071 1.070 -1.323 1.703 sum 9.986 -7.987 11.790 17.393 Atomic orbital electron populations 1.70070 1.06932 1.27419 1.49465 1.25594 0.95449 1.01654 0.94270 0.85859 0.78556 0.79978 0.78721 1.19524 1.21381 1.20228 1.20607 0.92842 0.89708 1.51543 0.92268 1.19065 1.00648 0.93965 0.86662 1.20855 0.84270 0.98552 0.91344 1.45791 1.13714 1.59812 1.12028 1.19942 0.88462 0.80175 0.83329 1.90725 1.32538 1.46825 1.72883 1.20244 0.88285 0.78704 0.82827 1.90761 1.33361 1.43025 1.71966 1.42909 1.18079 1.52509 1.14125 1.19001 0.87441 1.03846 0.91747 1.21941 0.91363 0.96821 1.02096 1.22421 1.00809 0.99455 0.94088 1.23333 0.94690 0.95186 0.94399 1.67751 0.99980 1.12328 1.39501 1.22949 0.99647 0.97506 0.87702 1.23064 0.99096 0.96066 1.03643 1.22388 0.92127 1.01567 1.02402 0.93067 0.93996 0.92079 0.74652 0.72551 0.84187 0.81503 0.79399 0.80429 0.90028 0.89019 0.90582 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.37 12.65 21.45 0.27 -49.10 16 2 C 0.03 1.66 5.43 84.65 0.46 2.12 16 3 Si 0.94 42.14 29.54 68.60 2.03 44.17 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.51 -25.64 8.13 25.60 0.21 -25.43 16 8 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 9 C 0.00 -0.12 1.61 -52.93 -0.09 -0.21 16 10 C 0.17 7.35 5.58 86.38 0.48 7.83 16 11 N -0.66 -25.29 5.40 -464.50 -2.51 -27.80 16 12 C 0.50 17.50 7.88 87.24 0.69 18.19 16 13 O -0.55 -20.61 16.48 -3.27 -0.05 -20.66 16 14 C 0.52 15.66 7.74 87.24 0.68 16.34 16 15 O -0.52 -17.45 13.96 -3.33 -0.05 -17.49 16 16 N -0.63 -14.80 5.33 -304.52 -1.62 -16.43 16 17 C 0.08 1.71 6.32 38.30 0.24 1.95 16 18 C -0.09 -2.11 8.81 22.59 0.20 -1.91 16 19 C -0.15 -2.46 10.10 22.34 0.23 -2.23 16 20 C 0.08 1.32 11.18 84.70 0.95 2.27 16 21 N -0.49 -10.08 10.35 -195.27 -2.02 -12.10 16 22 C 0.08 1.63 11.13 84.85 0.94 2.58 16 23 C -0.18 -7.03 9.93 30.62 0.30 -6.73 16 24 C -0.15 -6.40 9.17 30.62 0.28 -6.12 16 25 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 26 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 2.42 8.06 -2.39 -0.02 2.40 16 28 H 0.42 15.84 7.49 -92.71 -0.69 15.14 16 29 H 0.43 8.44 8.32 -92.70 -0.77 7.67 16 30 H 0.14 3.44 6.30 -2.91 -0.02 3.42 16 31 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -61.75 329.24 1.27 -60.48 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.34 Total: 30.28 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.57 Total: 8.65 kcal Atomic # 7 Polarization: -99.55 SS G_CDS: -5.88 Total: -105.43 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.10 Total: -38.16 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -61.75 1.27 -60.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430350831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.978 kcal (2) G-P(sol) polarization free energy of solvation -61.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds