Wall clock time and date at job start Tue Mar 31 2020 02:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99976 * 2 1 4 4 H 1.48494 * 109.47039 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47251 * 300.00482 * 3 2 1 6 6 H 1.48503 * 109.46882 * 60.00264 * 3 2 1 7 7 C 1.37872 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00304 * 181.97648 * 7 2 1 9 9 C 1.50709 * 120.00179 * 1.97625 * 7 2 1 10 10 C 1.52997 * 115.54873 * 84.65579 * 9 7 2 11 11 N 1.46503 * 109.47056 * 57.83930 * 10 9 7 12 12 C 1.34784 * 119.99530 * 185.19487 * 11 10 9 13 13 O 1.21486 * 120.00436 * 5.59395 * 12 11 10 14 14 C 1.48343 * 119.99480 * 185.58908 * 12 11 10 15 15 C 1.39300 * 119.56530 * 174.27878 * 14 12 11 16 16 C 1.38455 * 119.18837 * 180.02562 * 15 14 12 17 17 C 1.39873 * 118.35496 * 0.24587 * 16 15 14 18 18 C 1.48004 * 120.46388 * 179.75530 * 17 16 15 19 19 N 1.34779 * 120.00205 * 180.02562 * 18 17 16 20 20 O 1.21536 * 119.99584 * 359.97438 * 18 17 16 21 21 C 1.39732 * 119.07497 * 359.48280 * 17 16 15 22 22 N 1.31411 * 120.71684 * 0.53556 * 21 17 16 23 23 C 1.52996 * 117.49837 * 230.32733 * 9 7 2 24 24 C 1.52992 * 117.49646 * 298.98729 * 9 7 2 25 25 H 0.96999 * 120.00011 * 5.01257 * 1 2 3 26 26 H 1.09003 * 109.47249 * 297.84064 * 10 9 7 27 27 H 1.08996 * 109.47286 * 177.83825 * 10 9 7 28 28 H 0.96994 * 120.00562 * 5.18917 * 11 10 9 29 29 H 1.07996 * 120.41009 * 0.02562 * 15 14 12 30 30 H 1.07991 * 120.82373 * 179.97438 * 16 15 14 31 31 H 0.97001 * 119.99644 * 359.97438 * 19 18 17 32 32 H 0.96993 * 119.99791 * 180.02562 * 19 18 17 33 33 H 1.07998 * 119.63982 * 180.24624 * 21 17 16 34 34 H 1.09000 * 117.49511 * 215.00752 * 23 9 7 35 35 H 1.09001 * 117.49995 * 0.02562 * 23 9 7 36 36 H 1.08994 * 117.50490 * 359.97438 * 24 9 7 37 37 H 1.09000 * 117.49993 * 144.97478 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0841 -1.1944 0.0317 9 6 1.2517 -2.4988 -0.0461 10 6 0.8518 -2.9815 -1.4418 11 7 2.0506 -3.1212 -2.2723 12 6 1.9331 -3.4350 -3.5778 13 8 0.8335 -3.5021 -4.0899 14 6 3.1466 -3.6983 -4.3894 15 6 3.0120 -4.1380 -5.7043 16 6 4.1499 -4.3818 -6.4545 17 6 5.3971 -4.1799 -5.8545 18 6 6.6436 -4.4315 -6.6117 19 7 7.8405 -4.2344 -6.0242 20 8 6.5879 -4.8167 -7.7630 21 6 5.4498 -3.7319 -4.5320 22 7 4.3463 -3.5118 -3.8533 23 6 1.6177 -3.5622 0.9912 24 6 0.2940 -2.8024 1.1077 25 1 -0.4850 0.8368 -0.0734 26 1 0.1767 -2.2569 -1.8973 27 1 0.3501 -3.9459 -1.3629 28 1 2.9288 -2.9879 -1.8827 29 1 2.0322 -4.2868 -6.1333 30 1 4.0762 -4.7237 -7.4762 31 1 7.8849 -3.9273 -5.1051 32 1 8.6574 -4.3989 -6.5206 33 1 6.4080 -3.5691 -4.0610 34 1 1.5737 -4.6057 0.6792 35 1 2.4027 -3.3180 1.7069 36 1 0.2087 -2.0588 1.9000 37 1 -0.6212 -3.3457 0.8725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431165561.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:03 Heat of formation + Delta-G solvation = -40.494134 kcal Electronic energy + Delta-G solvation = -21911.753179 eV Core-core repulsion = 18460.612396 eV Total energy + Delta-G solvation = -3451.140783 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.93822 -40.63972 -39.58971 -38.42726 -35.15119 -34.99115 -33.96874 -33.64672 -32.45808 -28.53896 -27.40745 -25.92339 -24.74260 -22.96604 -22.47305 -21.49104 -21.24036 -19.48336 -18.93077 -18.39249 -17.81297 -17.21285 -16.69207 -16.46195 -16.32618 -16.15968 -15.94391 -15.82973 -15.28061 -14.89696 -14.51445 -14.44036 -14.20399 -13.75335 -13.69910 -13.44317 -12.88558 -12.86033 -12.33623 -12.00809 -11.61142 -11.52413 -11.29860 -11.15649 -10.95610 -10.78372 -10.64671 -10.44067 -10.40057 -10.09011 -9.80661 -8.09173 -6.21725 -0.89321 0.07523 1.31341 1.41036 1.44815 1.53849 1.99571 2.10852 2.36863 2.43898 2.76642 3.00011 3.20365 3.49929 3.58127 3.67764 3.80045 3.92199 3.99016 4.25602 4.54240 4.56359 4.66569 4.71159 4.81393 4.83038 5.01284 5.04739 5.29808 5.30566 5.51025 5.59442 5.70070 5.79000 5.81545 6.30711 6.37788 6.42765 6.74459 6.86058 7.18879 7.19914 7.48062 8.98796 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.003870 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.325563 B = 7233.418555 C = 7811.227466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.945 3.055 4 H -0.260 1.260 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.499 4.499 8 H 0.063 0.937 9 C 0.000 4.000 10 C 0.174 3.826 11 N -0.673 5.673 12 C 0.551 3.449 13 O -0.578 6.578 14 C 0.097 3.903 15 C -0.121 4.121 16 C -0.017 4.017 17 C -0.175 4.175 18 C 0.574 3.426 19 N -0.822 5.822 20 O -0.577 6.577 21 C 0.143 3.857 22 N -0.473 5.473 23 C -0.178 4.178 24 C -0.153 4.153 25 H 0.258 0.742 26 H 0.034 0.966 27 H 0.048 0.952 28 H 0.417 0.583 29 H 0.157 0.843 30 H 0.167 0.833 31 H 0.419 0.581 32 H 0.418 0.582 33 H 0.208 0.792 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.583 -8.762 -8.554 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.772 3.228 4 H -0.184 1.184 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.536 4.536 8 H 0.081 0.919 9 C -0.001 4.001 10 C 0.050 3.950 11 N -0.321 5.321 12 C 0.336 3.664 13 O -0.459 6.459 14 C -0.040 4.040 15 C -0.142 4.142 16 C -0.044 4.044 17 C -0.181 4.181 18 C 0.358 3.642 19 N -0.387 5.387 20 O -0.457 6.457 21 C -0.018 4.018 22 N -0.184 5.184 23 C -0.215 4.215 24 C -0.191 4.191 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.254 0.746 29 H 0.175 0.825 30 H 0.185 0.815 31 H 0.252 0.748 32 H 0.251 0.749 33 H 0.225 0.775 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.462 -8.631 -8.597 18.909 hybrid contribution 0.356 1.068 -0.340 1.176 sum 14.818 -7.563 -8.937 18.885 Atomic orbital electron populations 1.70115 1.07135 1.27184 1.50079 1.25666 0.95459 1.01933 0.94486 0.85702 0.79709 0.80396 0.77036 1.18370 1.21638 1.21053 1.20678 0.92590 0.89506 1.50866 0.91912 1.19071 1.00339 0.94205 0.86440 1.20720 0.85817 0.97407 0.91097 1.45740 1.11700 1.66230 1.08434 1.18411 0.87873 0.77698 0.82467 1.90725 1.27943 1.54982 1.72226 1.21205 0.91594 0.98070 0.93151 1.22178 1.01539 0.97541 0.92914 1.21917 0.89968 0.91557 1.00933 1.21244 0.94875 1.05195 0.96737 1.17965 0.84420 0.76454 0.85354 1.43553 1.07089 1.69078 1.19020 1.90826 1.87862 1.48125 1.18918 1.23585 0.97734 0.90982 0.89511 1.67602 0.98062 1.14373 1.38314 1.23042 0.98454 0.96059 1.03907 1.22392 0.92576 1.01727 1.02433 0.93335 0.94763 0.93430 0.74562 0.82537 0.81512 0.74839 0.74872 0.77520 0.89130 0.89655 0.91791 0.90978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.16 12.72 21.45 0.27 -50.89 16 2 C 0.03 1.33 5.43 84.65 0.46 1.78 16 3 Si 0.95 42.24 29.54 68.60 2.03 44.27 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.50 -25.33 8.38 25.60 0.21 -25.12 16 8 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 9 C 0.00 0.01 1.51 -52.93 -0.08 -0.07 16 10 C 0.17 7.85 5.57 86.38 0.48 8.33 16 11 N -0.67 -26.84 5.36 -465.49 -2.50 -29.34 16 12 C 0.55 21.26 7.80 86.93 0.68 21.94 16 13 O -0.58 -25.74 16.30 -3.67 -0.06 -25.79 16 14 C 0.10 2.91 6.75 41.96 0.28 3.19 16 15 C -0.12 -3.02 9.62 22.58 0.22 -2.80 16 16 C -0.02 -0.35 9.71 22.72 0.22 -0.13 16 17 C -0.18 -3.13 5.90 -19.93 -0.12 -3.25 16 18 C 0.57 9.59 8.06 86.83 0.70 10.29 16 19 N -0.82 -5.90 8.83 -175.49 -1.55 -7.45 16 20 O -0.58 -14.38 17.25 -3.83 -0.07 -14.45 16 21 C 0.14 2.44 10.71 85.12 0.91 3.35 16 22 N -0.47 -12.14 9.53 -183.90 -1.75 -13.89 16 23 C -0.18 -6.95 9.94 30.62 0.30 -6.64 16 24 C -0.15 -6.88 9.26 30.62 0.28 -6.60 16 25 H 0.26 14.05 8.32 -92.71 -0.77 13.28 16 26 H 0.03 1.81 8.09 -2.39 -0.02 1.80 16 27 H 0.05 2.04 8.11 -2.39 -0.02 2.02 16 28 H 0.42 15.66 7.58 -92.71 -0.70 14.95 16 29 H 0.16 3.84 7.64 -2.91 -0.02 3.81 16 30 H 0.17 2.92 7.73 -2.91 -0.02 2.90 16 31 H 0.42 0.49 6.89 -92.71 -0.64 -0.15 16 32 H 0.42 1.93 8.93 -92.71 -0.83 1.10 16 33 H 0.21 1.44 6.41 -2.91 -0.02 1.42 16 34 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -71.14 329.55 -0.09 -71.23 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -1.02 Total: 22.05 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 4.56 Total: 4.27 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -5.53 Total: -101.57 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.13 Total: -40.24 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -71.14 -0.09 -71.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431165561.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.734 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds