Wall clock time and date at job start Tue Mar 31 2020 02:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99667 * 2 1 4 4 H 1.48494 * 109.47127 * 239.99356 * 3 2 1 5 5 H 1.48495 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47007 * 119.99714 * 3 2 1 7 7 C 1.37872 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00114 * 169.38963 * 7 2 1 9 9 C 1.50703 * 119.99999 * 349.39445 * 7 2 1 10 10 C 1.52998 * 115.54780 * 325.11613 * 9 7 2 11 11 N 1.46502 * 109.47348 * 306.46125 * 10 9 7 12 12 C 1.34777 * 120.00189 * 183.71244 * 11 10 9 13 13 O 1.21529 * 120.00084 * 5.70760 * 12 11 10 14 14 C 1.48005 * 119.99902 * 185.70613 * 12 11 10 15 15 C 1.39870 * 120.46166 * 174.81885 * 14 12 11 16 16 C 1.38447 * 118.35886 * 180.02562 * 15 14 12 17 17 C 1.39308 * 119.19028 * 0.02562 * 16 15 14 18 18 C 1.48329 * 119.56862 * 180.02562 * 17 16 15 19 19 N 1.34785 * 119.99588 * 179.97438 * 18 17 16 20 20 O 1.21494 * 120.00574 * 359.97365 * 18 17 16 21 21 N 1.32711 * 120.85365 * 359.97438 * 17 16 15 22 22 C 1.31417 * 121.80537 * 0.02562 * 21 17 16 23 23 C 1.52999 * 117.49984 * 110.78638 * 9 7 2 24 24 C 1.52994 * 117.49822 * 179.44962 * 9 7 2 25 25 H 0.96997 * 120.00349 * 5.03541 * 1 2 3 26 26 H 1.08998 * 109.47294 * 186.46196 * 10 9 7 27 27 H 1.09005 * 109.47340 * 66.46483 * 10 9 7 28 28 H 0.97008 * 119.99811 * 3.72106 * 11 10 9 29 29 H 1.08000 * 120.82159 * 359.97438 * 15 14 12 30 30 H 1.08004 * 120.40535 * 180.02562 * 16 15 14 31 31 H 0.96996 * 119.99778 * 359.97438 * 19 18 17 32 32 H 0.96996 * 119.99844 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.64220 * 180.02562 * 22 21 17 34 34 H 1.09000 * 117.49766 * 215.00693 * 23 9 7 35 35 H 1.09002 * 117.49513 * 0.02562 * 23 9 7 36 36 H 1.09000 * 117.50035 * 359.97107 * 24 9 7 37 37 H 1.09005 * 117.50036 * 144.97785 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0707 -1.2020 -0.1717 9 6 1.2705 -2.4879 0.2413 10 6 0.1026 -2.4104 1.2266 11 7 0.5642 -1.8208 2.4858 12 6 -0.2790 -1.7216 3.5326 13 8 -1.3883 -2.2137 3.4680 14 6 0.1462 -1.0134 4.7607 15 6 -0.7557 -0.8105 5.8104 16 6 -0.3118 -0.1423 6.9388 17 6 1.0074 0.3024 6.9902 18 6 1.4919 1.0187 8.1953 19 7 2.7667 1.4523 8.2544 20 8 0.7397 1.2147 9.1291 21 7 1.8364 0.0925 5.9753 22 6 1.4537 -0.5374 4.8873 23 6 1.1377 -3.4546 -0.9371 24 6 2.0895 -3.7799 0.2168 25 1 -0.4850 0.8367 -0.0737 26 1 -0.2816 -3.4130 1.4143 27 1 -0.6889 -1.7913 0.8041 28 1 1.4767 -1.5016 2.5661 29 1 -1.7734 -1.1655 5.7420 30 1 -0.9802 0.0321 7.7691 31 1 3.3673 1.2955 7.5090 32 1 3.0837 1.9203 9.0426 33 1 2.1577 -0.6894 4.0825 34 1 0.2182 -4.0354 -1.0104 35 1 1.5817 -3.1549 -1.8864 36 1 3.1593 -3.6941 0.0260 37 1 1.7965 -4.5747 0.9028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435956713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:21 Heat of formation + Delta-G solvation = -14.481788 kcal Electronic energy + Delta-G solvation = -22324.220590 eV Core-core repulsion = 18874.207787 eV Total energy + Delta-G solvation = -3450.012803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80638 -39.33259 -38.29896 -36.74979 -34.03226 -33.45703 -32.43659 -32.30978 -31.44935 -26.78574 -25.69015 -24.57687 -23.64781 -21.52391 -21.26056 -20.01992 -19.42034 -18.46252 -17.57702 -17.29647 -16.24361 -16.10836 -15.29557 -15.15714 -14.93255 -14.69195 -14.53812 -14.43595 -13.84547 -13.43662 -13.28084 -13.13259 -12.74986 -12.49040 -11.88641 -11.61842 -11.11268 -10.92400 -10.63521 -10.59688 -10.36869 -10.06351 -10.02554 -9.92835 -9.68555 -9.32912 -9.30592 -9.20169 -8.93344 -8.39026 -8.03590 -6.18294 -4.29017 0.25385 1.08922 2.40131 3.14336 3.15911 3.23479 3.24344 3.32728 3.72375 3.97970 4.02565 4.20245 4.69824 4.74715 4.81871 4.84409 5.08992 5.23621 5.40610 5.52859 5.85322 5.91825 6.03529 6.21350 6.34058 6.44430 6.51238 6.52505 6.60944 6.80745 6.96629 7.04531 7.18750 7.34207 7.44410 7.53904 7.80019 8.00202 8.20403 8.26877 8.70198 8.81986 9.32412 10.78413 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.004695 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.074960 B = 5961.910686 C = 6779.407776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.160 3.840 11 N -0.675 5.675 12 C 0.546 3.454 13 O -0.551 6.551 14 C -0.143 4.143 15 C -0.029 4.029 16 C -0.117 4.117 17 C 0.079 3.921 18 C 0.581 3.419 19 N -0.835 5.835 20 O -0.538 6.538 21 N -0.462 5.462 22 C 0.131 3.869 23 C -0.194 4.194 24 C -0.211 4.211 25 H 0.265 0.735 26 H 0.032 0.968 27 H 0.112 0.888 28 H 0.400 0.600 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.414 0.586 32 H 0.404 0.596 33 H 0.172 0.828 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 0.675 11.057 11.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.129 4.129 3 Si 0.715 3.285 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.035 3.965 10 C 0.038 3.962 11 N -0.323 5.323 12 C 0.330 3.670 13 O -0.431 6.431 14 C -0.148 4.148 15 C -0.056 4.056 16 C -0.138 4.138 17 C -0.059 4.059 18 C 0.364 3.636 19 N -0.398 5.398 20 O -0.414 6.414 21 N -0.173 5.173 22 C -0.030 4.030 23 C -0.233 4.233 24 C -0.249 4.249 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.130 0.870 28 H 0.236 0.764 29 H 0.173 0.827 30 H 0.170 0.830 31 H 0.244 0.756 32 H 0.235 0.765 33 H 0.189 0.811 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.552 0.835 11.616 12.176 hybrid contribution 0.573 0.856 -0.403 1.106 sum 4.125 1.691 11.213 12.067 Atomic orbital electron populations 1.69822 1.05922 1.27242 1.47299 1.24975 0.94746 0.99045 0.94107 0.86708 0.79765 0.82964 0.79040 1.20108 1.21195 1.19776 1.20465 0.94107 0.88818 1.50546 0.91877 1.19172 0.94108 0.89097 0.94085 1.21120 0.98421 0.95600 0.81067 1.45771 1.14570 1.59646 1.12277 1.17888 0.85394 0.80794 0.82889 1.90723 1.21022 1.48841 1.82532 1.21530 0.95759 1.00678 0.96828 1.21795 1.00646 0.92721 0.90409 1.22083 0.95849 0.96740 0.99142 1.21156 0.91856 0.99102 0.93835 1.17904 0.82338 0.77925 0.85432 1.43640 1.12512 1.60105 1.23550 1.90820 1.55786 1.57287 1.37526 1.67490 1.36597 1.12861 1.00335 1.23079 0.93908 0.91419 0.94585 1.22922 0.99471 1.06521 0.94383 1.22978 0.96915 1.01950 1.03032 0.92421 0.94987 0.87027 0.76372 0.82689 0.82951 0.75581 0.76486 0.81146 0.91448 0.90127 0.90524 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.04 10.75 55.43 0.60 -21.45 16 2 C 0.08 1.84 5.13 -17.82 -0.09 1.75 16 3 Si 0.89 19.03 29.55 -169.99 -5.02 14.00 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.50 -11.96 8.27 -34.44 -0.28 -12.24 16 8 H 0.06 1.50 7.84 -52.49 -0.41 1.09 16 9 C 0.04 0.80 2.00 -155.66 -0.31 0.49 16 10 C 0.16 3.54 4.75 -4.04 -0.02 3.52 16 11 N -0.68 -13.27 5.23 -61.20 -0.32 -13.59 16 12 C 0.55 10.49 7.77 -12.26 -0.10 10.39 16 13 O -0.55 -12.17 16.42 5.34 0.09 -12.08 16 14 C -0.14 -2.24 5.90 -104.73 -0.62 -2.86 16 15 C -0.03 -0.41 9.71 -38.89 -0.38 -0.78 16 16 C -0.12 -1.51 9.62 -39.11 -0.38 -1.88 16 17 C 0.08 1.05 6.75 -82.94 -0.56 0.49 16 18 C 0.58 7.32 8.09 -12.10 -0.10 7.22 16 19 N -0.83 -7.40 8.86 30.64 0.27 -7.13 16 20 O -0.54 -8.18 17.15 5.37 0.09 -8.09 16 21 N -0.46 -6.19 9.52 -9.48 -0.09 -6.28 16 22 C 0.13 1.86 10.71 -17.17 -0.18 1.68 16 23 C -0.19 -4.06 9.96 -26.69 -0.27 -4.32 16 24 C -0.21 -4.14 9.92 -26.69 -0.26 -4.40 16 25 H 0.27 6.64 8.32 -40.82 -0.34 6.30 16 26 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 27 H 0.11 2.82 6.04 -51.93 -0.31 2.51 16 28 H 0.40 7.32 6.00 -40.82 -0.24 7.08 16 29 H 0.16 2.03 7.74 -52.49 -0.41 1.63 16 30 H 0.15 1.72 7.63 -52.48 -0.40 1.32 16 31 H 0.41 3.22 8.15 -40.82 -0.33 2.89 16 32 H 0.40 2.70 8.93 -40.82 -0.36 2.34 16 33 H 0.17 2.21 6.43 -52.49 -0.34 1.87 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -28.94 325.06 -7.09 -36.03 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -4.06 Total: 14.65 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -3.55 Total: -0.96 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.46 Total: -48.45 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: 0.18 Total: -20.17 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.94 -7.09 -36.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435956713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.545 kcal (2) G-P(sol) polarization free energy of solvation -28.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds