Wall clock time and date at job start Tue Mar 31 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99667 * 2 1 4 4 H 1.48494 * 109.47127 * 239.99356 * 3 2 1 5 5 H 1.48495 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47007 * 119.99714 * 3 2 1 7 7 C 1.37872 * 120.00393 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00114 * 169.38963 * 7 2 1 9 9 C 1.50703 * 119.99999 * 349.39445 * 7 2 1 10 10 C 1.52998 * 115.54780 * 325.11613 * 9 7 2 11 11 N 1.46502 * 109.47348 * 306.46125 * 10 9 7 12 12 C 1.34777 * 120.00189 * 183.71244 * 11 10 9 13 13 O 1.21529 * 120.00084 * 5.70760 * 12 11 10 14 14 C 1.48005 * 119.99902 * 185.70613 * 12 11 10 15 15 C 1.39870 * 120.46166 * 174.81885 * 14 12 11 16 16 C 1.38447 * 118.35886 * 180.02562 * 15 14 12 17 17 C 1.39308 * 119.19028 * 0.02562 * 16 15 14 18 18 C 1.48329 * 119.56862 * 180.02562 * 17 16 15 19 19 N 1.34785 * 119.99588 * 179.97438 * 18 17 16 20 20 O 1.21494 * 120.00574 * 359.97365 * 18 17 16 21 21 N 1.32711 * 120.85365 * 359.97438 * 17 16 15 22 22 C 1.31417 * 121.80537 * 0.02562 * 21 17 16 23 23 C 1.52999 * 117.49984 * 110.78638 * 9 7 2 24 24 C 1.52994 * 117.49822 * 179.44962 * 9 7 2 25 25 H 0.96997 * 120.00349 * 5.03541 * 1 2 3 26 26 H 1.08998 * 109.47294 * 186.46196 * 10 9 7 27 27 H 1.09005 * 109.47340 * 66.46483 * 10 9 7 28 28 H 0.97008 * 119.99811 * 3.72106 * 11 10 9 29 29 H 1.08000 * 120.82159 * 359.97438 * 15 14 12 30 30 H 1.08004 * 120.40535 * 180.02562 * 16 15 14 31 31 H 0.96996 * 119.99778 * 359.97438 * 19 18 17 32 32 H 0.96996 * 119.99844 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.64220 * 180.02562 * 22 21 17 34 34 H 1.09000 * 117.49766 * 215.00693 * 23 9 7 35 35 H 1.09002 * 117.49513 * 0.02562 * 23 9 7 36 36 H 1.09000 * 117.50035 * 359.97107 * 24 9 7 37 37 H 1.09005 * 117.50036 * 144.97785 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0707 -1.2020 -0.1717 9 6 1.2705 -2.4879 0.2413 10 6 0.1026 -2.4104 1.2266 11 7 0.5642 -1.8208 2.4858 12 6 -0.2790 -1.7216 3.5326 13 8 -1.3883 -2.2137 3.4680 14 6 0.1462 -1.0134 4.7607 15 6 -0.7557 -0.8105 5.8104 16 6 -0.3118 -0.1423 6.9388 17 6 1.0074 0.3024 6.9902 18 6 1.4919 1.0187 8.1953 19 7 2.7667 1.4523 8.2544 20 8 0.7397 1.2147 9.1291 21 7 1.8364 0.0925 5.9753 22 6 1.4537 -0.5374 4.8873 23 6 1.1377 -3.4546 -0.9371 24 6 2.0895 -3.7799 0.2168 25 1 -0.4850 0.8367 -0.0737 26 1 -0.2816 -3.4130 1.4143 27 1 -0.6889 -1.7913 0.8041 28 1 1.4767 -1.5016 2.5661 29 1 -1.7734 -1.1655 5.7420 30 1 -0.9802 0.0321 7.7691 31 1 3.3673 1.2955 7.5090 32 1 3.0837 1.9203 9.0426 33 1 2.1577 -0.6894 4.0825 34 1 0.2182 -4.0354 -1.0104 35 1 1.5817 -3.1549 -1.8864 36 1 3.1593 -3.6941 0.0260 37 1 1.7965 -4.5747 0.9028 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435956713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:20 Heat of formation + Delta-G solvation = -35.327942 kcal Electronic energy + Delta-G solvation = -22325.124547 eV Core-core repulsion = 18874.207787 eV Total energy + Delta-G solvation = -3450.916760 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.93995 -40.61823 -39.57132 -38.41311 -35.03825 -34.97214 -34.13745 -33.52946 -32.62543 -28.30030 -27.45336 -25.91984 -24.75872 -22.97252 -22.54100 -21.41248 -21.13011 -19.51916 -18.94894 -18.40751 -17.76943 -17.28588 -16.73942 -16.40487 -16.34788 -16.03127 -15.98112 -15.72173 -15.28096 -14.85379 -14.49943 -14.41013 -14.18227 -13.77781 -13.59113 -13.39564 -12.82865 -12.66525 -12.30236 -12.02826 -11.69883 -11.55174 -11.16590 -11.14498 -11.04249 -10.80402 -10.70472 -10.62070 -10.44480 -10.11823 -9.71647 -8.01656 -6.17447 -0.88766 0.00528 1.29170 1.44931 1.49833 1.54557 2.01748 2.19677 2.31775 2.43425 2.75480 2.99827 3.05633 3.58960 3.65617 3.69164 3.81566 3.89359 4.01816 4.26816 4.50637 4.54948 4.76155 4.77637 4.81468 4.90156 4.99966 5.13921 5.26099 5.30976 5.54035 5.61603 5.71550 5.74096 5.93788 6.16566 6.39585 6.49703 6.69748 6.88146 7.15123 7.29840 7.46122 8.92532 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.004695 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.074960 B = 5961.910686 C = 6779.407776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.042 3.958 3 Si 0.937 3.063 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.256 1.256 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.011 3.989 10 C 0.172 3.828 11 N -0.674 5.674 12 C 0.547 3.453 13 O -0.586 6.586 14 C -0.160 4.160 15 C -0.024 4.024 16 C -0.113 4.113 17 C 0.079 3.921 18 C 0.580 3.420 19 N -0.813 5.813 20 O -0.567 6.567 21 N -0.456 5.456 22 C 0.135 3.865 23 C -0.200 4.200 24 C -0.185 4.185 25 H 0.259 0.741 26 H 0.029 0.971 27 H 0.077 0.923 28 H 0.407 0.593 29 H 0.160 0.840 30 H 0.169 0.831 31 H 0.422 0.578 32 H 0.417 0.583 33 H 0.182 0.818 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 1.043 12.285 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.160 4.160 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.180 1.180 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.010 3.990 10 C 0.049 3.951 11 N -0.321 5.321 12 C 0.333 3.667 13 O -0.469 6.469 14 C -0.166 4.166 15 C -0.051 4.051 16 C -0.133 4.133 17 C -0.060 4.060 18 C 0.362 3.638 19 N -0.376 5.376 20 O -0.445 6.445 21 N -0.167 5.167 22 C -0.026 4.026 23 C -0.238 4.238 24 C -0.222 4.222 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.095 0.905 28 H 0.244 0.756 29 H 0.178 0.822 30 H 0.187 0.813 31 H 0.254 0.746 32 H 0.251 0.749 33 H 0.199 0.801 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.354 1.210 12.849 13.973 hybrid contribution 0.069 0.730 -0.766 1.060 sum 5.423 1.940 12.083 13.385 Atomic orbital electron populations 1.69989 1.07079 1.27187 1.48732 1.25501 0.95116 1.01398 0.94024 0.85925 0.78588 0.79677 0.79438 1.20329 1.22345 1.18036 1.20657 0.94071 0.89641 1.49969 0.91971 1.19225 0.95032 0.89690 0.95061 1.20762 0.97646 0.94716 0.81991 1.45656 1.14985 1.59710 1.11726 1.18337 0.84673 0.80079 0.83582 1.90694 1.22459 1.50385 1.83382 1.21262 0.97043 1.02308 0.95957 1.21893 1.00669 0.92321 0.90209 1.22231 0.96066 0.95990 0.99039 1.21455 0.92063 0.98438 0.93995 1.17822 0.83151 0.78030 0.84754 1.43508 1.11262 1.58607 1.24249 1.90816 1.56758 1.58661 1.38303 1.67551 1.36335 1.12725 1.00087 1.23199 0.93380 0.90909 0.95070 1.22938 1.00377 1.06297 0.94227 1.22971 0.97010 1.00376 1.01823 0.93144 0.95264 0.90506 0.75584 0.82234 0.81305 0.74632 0.74931 0.80081 0.90779 0.90652 0.89575 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.06 10.75 21.45 0.23 -45.83 16 2 C 0.04 2.01 5.13 84.65 0.43 2.44 16 3 Si 0.94 38.45 29.55 68.60 2.03 40.48 16 4 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.30 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.51 -23.73 8.27 25.60 0.21 -23.52 16 8 H 0.06 2.88 7.84 -2.91 -0.02 2.86 16 9 C 0.01 0.46 2.00 -52.93 -0.11 0.36 16 10 C 0.17 7.68 4.75 86.38 0.41 8.10 16 11 N -0.67 -26.42 5.23 -465.82 -2.44 -28.86 16 12 C 0.55 21.09 7.77 86.83 0.67 21.77 16 13 O -0.59 -26.41 16.42 -3.81 -0.06 -26.47 16 14 C -0.16 -4.92 5.90 -19.93 -0.12 -5.04 16 15 C -0.02 -0.66 9.71 22.71 0.22 -0.44 16 16 C -0.11 -2.70 9.62 22.58 0.22 -2.48 16 17 C 0.08 1.93 6.75 41.96 0.28 2.21 16 18 C 0.58 13.28 8.09 86.93 0.70 13.99 16 19 N -0.81 -12.17 8.86 -175.26 -1.55 -13.72 16 20 O -0.57 -16.17 17.15 -3.70 -0.06 -16.23 16 21 N -0.46 -11.20 9.52 -183.91 -1.75 -12.96 16 22 C 0.14 3.62 10.71 85.11 0.91 4.53 16 23 C -0.20 -8.18 9.96 30.62 0.30 -7.87 16 24 C -0.18 -6.88 9.92 30.62 0.30 -6.57 16 25 H 0.26 13.22 8.32 -92.71 -0.77 12.45 16 26 H 0.03 1.29 8.06 -2.39 -0.02 1.27 16 27 H 0.08 4.01 6.04 -2.38 -0.01 4.00 16 28 H 0.41 14.61 6.00 -92.70 -0.56 14.05 16 29 H 0.16 4.10 7.74 -2.91 -0.02 4.08 16 30 H 0.17 3.49 7.63 -2.91 -0.02 3.46 16 31 H 0.42 5.29 8.15 -92.71 -0.76 4.53 16 32 H 0.42 4.40 8.93 -92.71 -0.83 3.58 16 33 H 0.18 4.37 6.43 -2.91 -0.02 4.35 16 34 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 35 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.08 2.89 8.14 -2.38 -0.02 2.87 16 Total: -1.00 -61.14 325.06 -0.14 -61.29 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -0.99 Total: 34.82 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 4.45 Total: 7.47 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -5.51 Total: -101.36 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -0.13 Total: -42.70 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -61.14 -0.14 -61.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435956713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.961 kcal (2) G-P(sol) polarization free energy of solvation -61.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds