Wall clock time and date at job start Tue Mar 31 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32994 * 1 3 3 C 1.47096 * 120.00299 * 2 1 4 4 O 1.21616 * 120.00244 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00218 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00183 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47033 * 179.97438 * 6 5 3 8 8 C 1.50706 * 109.46937 * 180.02562 * 7 6 5 9 9 O 1.21276 * 119.99987 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99661 * 180.02562 * 8 7 6 11 11 C 1.39475 * 119.99474 * 185.07745 * 10 8 7 12 12 C 1.38590 * 119.57551 * 185.35966 * 11 10 8 13 13 C 1.40809 * 118.79490 * 179.70049 * 12 11 10 14 14 C 1.41544 * 120.99971 * 180.25620 * 13 12 11 15 15 H 1.07994 * 120.00299 * 153.75178 * 14 13 12 16 16 C 1.40038 * 119.99830 * 333.74897 * 14 13 12 17 17 N 1.30743 * 119.99889 * 350.16752 * 16 14 13 18 18 Si 1.86803 * 120.00022 * 170.15984 * 16 14 13 19 19 H 1.48495 * 109.46990 * 60.00258 * 18 16 14 20 20 H 1.48501 * 109.47119 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46833 * 300.00245 * 18 16 14 22 22 C 1.41172 * 118.00859 * 0.27806 * 13 12 11 23 23 C 1.37594 * 119.01359 * 359.97438 * 22 13 12 24 24 N 1.32082 * 121.11005 * 0.02562 * 23 22 13 25 25 H 1.08005 * 119.99580 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00296 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99580 * 179.97438 * 2 1 3 28 28 H 0.97000 * 120.00066 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.46904 * 60.00076 * 6 5 3 30 30 H 1.08998 * 109.47178 * 299.99668 * 6 5 3 31 31 H 1.08993 * 109.47339 * 59.99950 * 7 6 5 32 32 H 1.09000 * 109.47474 * 299.99879 * 7 6 5 33 33 H 0.96997 * 119.99949 * 5.07118 * 10 8 7 34 34 H 1.08007 * 120.60588 * 359.97438 * 12 11 10 35 35 H 0.97004 * 119.99893 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.49563 * 179.97438 * 22 13 12 37 37 H 1.07997 * 119.44539 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4575 2.3271 -0.0005 5 7 3.4132 1.2738 0.0005 6 6 4.1458 2.5425 0.0000 7 6 5.6500 2.2629 0.0014 8 6 6.4036 3.5680 0.0014 9 8 5.7972 4.6183 0.0000 10 7 7.7514 3.5679 0.0021 11 6 8.4487 4.7710 0.1090 12 6 9.8301 4.7734 -0.0032 13 6 10.5169 5.9982 0.1011 14 6 11.9267 6.0553 -0.0117 15 1 12.4050 6.9622 -0.3507 16 6 12.7013 4.9356 0.3163 17 7 12.1481 3.9081 0.9057 18 14 14.5247 4.9103 -0.0885 19 1 15.2023 6.0322 0.6095 20 1 15.1129 3.6218 0.3576 21 1 14.7083 5.0565 -1.5548 22 6 9.7574 7.1675 0.3219 23 6 8.3892 7.0650 0.4250 24 7 7.7826 5.8963 0.3214 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8699 -0.9354 0.0004 28 1 3.8982 0.4338 0.0013 29 1 3.8821 3.1147 0.8895 30 1 3.8829 3.1135 -0.8905 31 1 5.9140 1.6905 -0.8878 32 1 5.9127 1.6921 0.8921 33 1 8.2363 2.7311 -0.0718 34 1 10.3696 3.8531 -0.1719 35 1 12.6846 3.1324 1.1326 36 1 10.2430 8.1282 0.4086 37 1 7.8014 7.9550 0.5944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490735757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:57 Heat of formation + Delta-G solvation = -18.410163 kcal Electronic energy + Delta-G solvation = -21264.751173 eV Core-core repulsion = 17814.568023 eV Total energy + Delta-G solvation = -3450.183150 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.96954 -39.48070 -37.88213 -35.31881 -34.34389 -33.76046 -33.20522 -31.07370 -30.49593 -28.53939 -26.03816 -25.06243 -22.62921 -21.97944 -21.31157 -20.19804 -19.49434 -17.75805 -17.64971 -16.88944 -16.08930 -15.95496 -15.41809 -15.23733 -14.78591 -14.49441 -14.22512 -14.03377 -13.66495 -13.48451 -13.39684 -12.73466 -12.62356 -12.31547 -12.17063 -11.93730 -11.54210 -11.40847 -11.22857 -10.93986 -10.33208 -10.18887 -10.14466 -10.12809 -9.78786 -9.45759 -9.40447 -9.19539 -8.02267 -7.77087 -7.08022 -6.78181 -4.66299 1.14258 2.49909 2.77816 2.92372 2.98303 3.01505 3.14600 3.16298 3.40909 3.71003 3.82579 4.50439 4.65522 4.73984 4.76171 5.01836 5.02599 5.27834 5.37872 5.64205 5.83570 5.88285 5.94780 5.97795 6.03952 6.27068 6.54750 6.60779 6.77179 6.91811 7.09450 7.32369 7.35023 7.42907 7.73397 7.90638 8.06843 8.17350 8.38925 8.66183 8.72014 8.82749 9.64761 10.06210 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033738 B = 0.002683 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.729837 B =10433.128736 C =11192.624323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.213 4.213 3 C 0.539 3.461 4 O -0.541 6.541 5 N -0.727 5.727 6 C 0.134 3.866 7 C -0.153 4.153 8 C 0.502 3.498 9 O -0.479 6.479 10 N -0.658 5.658 11 C 0.334 3.666 12 C -0.238 4.238 13 C 0.141 3.859 14 C -0.454 4.454 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.796 5.796 18 Si 0.916 3.084 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.281 4.281 23 C 0.118 3.882 24 N -0.554 5.554 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.400 0.600 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.408 0.592 34 H 0.133 0.867 35 H 0.281 0.719 36 H 0.103 0.897 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -13.043 -1.582 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.234 4.234 3 C 0.327 3.673 4 O -0.419 6.419 5 N -0.378 5.378 6 C 0.010 3.990 7 C -0.194 4.194 8 C 0.285 3.715 9 O -0.349 6.349 10 N -0.304 5.304 11 C 0.109 3.891 12 C -0.264 4.264 13 C 0.132 3.868 14 C -0.485 4.485 15 H 0.099 0.901 16 C -0.143 4.143 17 N -0.422 5.422 18 Si 0.740 3.260 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.305 4.305 23 C -0.037 4.037 24 N -0.273 5.273 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.144 0.856 28 H 0.234 0.766 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.243 0.757 34 H 0.151 0.849 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.928 -11.801 -1.393 16.837 hybrid contribution 2.491 -1.048 -0.138 2.706 sum -9.437 -12.850 -1.531 16.016 Atomic orbital electron populations 1.24753 0.95423 1.03333 0.90008 1.22785 0.96485 0.96915 1.07184 1.18704 0.82128 0.89962 0.76514 1.90828 1.68231 1.33316 1.49544 1.45918 1.06454 1.09859 1.75575 1.21062 0.88680 0.84891 1.04327 1.21825 0.95239 0.97503 1.04820 1.20296 0.82547 0.90701 0.77931 1.90817 1.67055 1.32692 1.44314 1.43424 1.06161 1.08475 1.72340 1.18206 0.88247 0.85280 0.97379 1.21670 0.90236 1.01110 1.13343 1.17596 0.93370 0.90096 0.85697 1.19553 0.90840 0.98738 1.39403 0.90078 1.25953 1.01526 0.94543 0.92269 1.69731 1.38366 1.05361 1.28785 0.86244 0.81273 0.78441 0.80055 1.18893 1.20264 1.18782 1.21938 0.94733 0.98933 1.14884 1.21767 0.91833 0.93708 0.96370 1.67182 1.39512 0.97282 1.23279 0.86751 0.86735 0.85571 0.76586 0.90282 0.90341 0.88494 0.88380 0.75678 0.84912 0.90766 0.87919 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 14.31 28.91 0.41 -0.25 16 2 C -0.21 -1.65 10.03 -37.81 -0.38 -2.03 16 3 C 0.54 6.37 7.76 -12.67 -0.10 6.28 16 4 O -0.54 -8.95 16.22 5.26 0.09 -8.87 16 5 N -0.73 -7.14 5.55 -61.49 -0.34 -7.48 16 6 C 0.13 1.71 4.96 -4.04 -0.02 1.69 16 7 C -0.15 -1.70 5.82 -27.88 -0.16 -1.86 16 8 C 0.50 8.86 7.78 -10.98 -0.09 8.77 16 9 O -0.48 -10.75 14.28 5.56 0.08 -10.68 16 10 N -0.66 -12.23 5.39 -11.49 -0.06 -12.30 16 11 C 0.33 7.95 7.40 -154.70 -1.15 6.81 16 12 C -0.24 -5.94 8.61 -38.48 -0.33 -6.27 16 13 C 0.14 3.67 5.60 -106.55 -0.60 3.07 16 14 C -0.45 -11.53 9.14 -37.65 -0.34 -11.88 16 15 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 16 C 0.08 1.78 5.31 -17.34 -0.09 1.69 16 17 N -0.80 -19.20 10.70 55.55 0.59 -18.60 16 18 Si 0.92 17.70 29.57 -169.99 -5.03 12.67 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 20 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 22 C -0.28 -6.87 9.90 -38.70 -0.38 -7.26 16 23 C 0.12 2.83 11.15 -17.68 -0.20 2.63 16 24 N -0.55 -14.09 7.89 -12.52 -0.10 -14.18 16 25 H 0.11 0.96 7.49 -52.48 -0.39 0.57 16 26 H 0.11 0.44 8.06 -52.49 -0.42 0.01 16 27 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 28 H 0.40 2.41 8.46 -40.82 -0.35 2.07 16 29 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 30 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.41 6.03 8.70 -40.82 -0.36 5.67 16 34 H 0.13 3.26 6.11 -52.48 -0.32 2.94 16 35 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 36 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -34.46 330.32 -7.55 -42.01 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -4.34 Total: 11.05 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -3.42 Total: 1.39 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.09 Total: -52.56 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.16 Total: -19.55 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.46 -7.55 -42.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490735757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.602 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds