Wall clock time and date at job start Tue Mar 31 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32994 * 1 3 3 C 1.47096 * 120.00299 * 2 1 4 4 O 1.21616 * 120.00244 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00218 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00183 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47033 * 179.97438 * 6 5 3 8 8 C 1.50706 * 109.46937 * 180.02562 * 7 6 5 9 9 O 1.21276 * 119.99987 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99661 * 180.02562 * 8 7 6 11 11 C 1.39475 * 119.99474 * 185.07745 * 10 8 7 12 12 C 1.38590 * 119.57551 * 185.35966 * 11 10 8 13 13 C 1.40809 * 118.79490 * 179.70049 * 12 11 10 14 14 C 1.41544 * 120.99971 * 180.25620 * 13 12 11 15 15 H 1.07994 * 120.00299 * 153.75178 * 14 13 12 16 16 C 1.40038 * 119.99830 * 333.74897 * 14 13 12 17 17 N 1.30743 * 119.99889 * 350.16752 * 16 14 13 18 18 Si 1.86803 * 120.00022 * 170.15984 * 16 14 13 19 19 H 1.48495 * 109.46990 * 60.00258 * 18 16 14 20 20 H 1.48501 * 109.47119 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46833 * 300.00245 * 18 16 14 22 22 C 1.41172 * 118.00859 * 0.27806 * 13 12 11 23 23 C 1.37594 * 119.01359 * 359.97438 * 22 13 12 24 24 N 1.32082 * 121.11005 * 0.02562 * 23 22 13 25 25 H 1.08005 * 119.99580 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00296 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99580 * 179.97438 * 2 1 3 28 28 H 0.97000 * 120.00066 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.46904 * 60.00076 * 6 5 3 30 30 H 1.08998 * 109.47178 * 299.99668 * 6 5 3 31 31 H 1.08993 * 109.47339 * 59.99950 * 7 6 5 32 32 H 1.09000 * 109.47474 * 299.99879 * 7 6 5 33 33 H 0.96997 * 119.99949 * 5.07118 * 10 8 7 34 34 H 1.08007 * 120.60588 * 359.97438 * 12 11 10 35 35 H 0.97004 * 119.99893 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.49563 * 179.97438 * 22 13 12 37 37 H 1.07997 * 119.44539 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4575 2.3271 -0.0005 5 7 3.4132 1.2738 0.0005 6 6 4.1458 2.5425 0.0000 7 6 5.6500 2.2629 0.0014 8 6 6.4036 3.5680 0.0014 9 8 5.7972 4.6183 0.0000 10 7 7.7514 3.5679 0.0021 11 6 8.4487 4.7710 0.1090 12 6 9.8301 4.7734 -0.0032 13 6 10.5169 5.9982 0.1011 14 6 11.9267 6.0553 -0.0117 15 1 12.4050 6.9622 -0.3507 16 6 12.7013 4.9356 0.3163 17 7 12.1481 3.9081 0.9057 18 14 14.5247 4.9103 -0.0885 19 1 15.2023 6.0322 0.6095 20 1 15.1129 3.6218 0.3576 21 1 14.7083 5.0565 -1.5548 22 6 9.7574 7.1675 0.3219 23 6 8.3892 7.0650 0.4250 24 7 7.7826 5.8963 0.3214 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8699 -0.9354 0.0004 28 1 3.8982 0.4338 0.0013 29 1 3.8821 3.1147 0.8895 30 1 3.8829 3.1135 -0.8905 31 1 5.9140 1.6905 -0.8878 32 1 5.9127 1.6921 0.8921 33 1 8.2363 2.7311 -0.0718 34 1 10.3696 3.8531 -0.1719 35 1 12.6846 3.1324 1.1326 36 1 10.2430 8.1282 0.4086 37 1 7.8014 7.9550 0.5944 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490735757.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:57 Heat of formation + Delta-G solvation = -43.593830 kcal Electronic energy + Delta-G solvation = -21265.843219 eV Core-core repulsion = 17814.568023 eV Total energy + Delta-G solvation = -3451.275196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.33750 -40.66698 -39.58518 -36.43102 -36.03796 -35.47980 -33.88548 -32.51989 -32.03092 -30.21812 -27.92069 -26.13374 -23.88807 -23.65418 -22.73033 -21.42960 -20.65565 -19.47090 -18.68599 -18.07628 -17.63396 -17.06945 -16.96266 -16.61311 -16.05477 -15.99493 -15.69777 -15.27385 -15.12216 -14.82172 -14.55322 -14.33508 -14.10098 -14.00790 -13.18160 -12.96814 -12.86643 -12.78703 -12.69480 -12.48688 -12.09487 -11.91806 -11.49460 -11.18844 -11.15992 -10.96429 -10.76431 -10.13754 -9.93804 -9.62154 -8.88070 -8.58122 -6.58143 0.48872 0.73105 1.00187 1.42133 1.52883 1.56195 1.85196 1.90770 2.21084 2.34159 2.47828 2.82860 3.55806 3.73239 3.80971 3.94279 4.05924 4.25714 4.30962 4.50040 4.74718 4.78554 4.81625 4.85669 4.91476 4.92866 5.10045 5.24384 5.31681 5.37244 5.47257 5.51925 5.64101 5.92260 6.14847 6.47627 6.56972 6.61562 6.78858 6.83804 7.24476 7.31300 7.83387 8.29200 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.033738 B = 0.002683 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.729837 B =10433.128736 C =11192.624323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.220 4.220 3 C 0.527 3.473 4 O -0.602 6.602 5 N -0.707 5.707 6 C 0.141 3.859 7 C -0.129 4.129 8 C 0.496 3.504 9 O -0.533 6.533 10 N -0.649 5.649 11 C 0.330 3.670 12 C -0.255 4.255 13 C 0.110 3.890 14 C -0.484 4.484 15 H 0.082 0.918 16 C 0.037 3.963 17 N -0.816 5.816 18 Si 0.990 3.010 19 H -0.263 1.263 20 H -0.264 1.264 21 H -0.260 1.260 22 C -0.296 4.296 23 C 0.110 3.890 24 N -0.580 5.580 25 H 0.089 0.911 26 H 0.154 0.846 27 H 0.168 0.832 28 H 0.423 0.577 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.426 0.574 34 H 0.133 0.867 35 H 0.292 0.708 36 H 0.115 0.885 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.283 -16.269 -1.739 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.240 4.240 3 C 0.318 3.682 4 O -0.485 6.485 5 N -0.360 5.360 6 C 0.016 3.984 7 C -0.169 4.169 8 C 0.283 3.717 9 O -0.406 6.406 10 N -0.297 5.297 11 C 0.104 3.896 12 C -0.280 4.280 13 C 0.102 3.898 14 C -0.514 4.514 15 H 0.100 0.900 16 C -0.179 4.179 17 N -0.442 5.442 18 Si 0.810 3.190 19 H -0.187 1.187 20 H -0.188 1.188 21 H -0.184 1.184 22 C -0.320 4.320 23 C -0.044 4.044 24 N -0.300 5.300 25 H 0.108 0.892 26 H 0.172 0.828 27 H 0.186 0.814 28 H 0.262 0.738 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.265 0.735 34 H 0.150 0.850 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.057 -15.115 -1.547 18.791 hybrid contribution 2.151 -0.058 -0.067 2.153 sum -8.906 -15.172 -1.614 17.667 Atomic orbital electron populations 1.25024 0.95399 1.04048 0.88098 1.22904 0.96638 0.96076 1.08383 1.19574 0.82577 0.90836 0.75221 1.90803 1.69415 1.35803 1.52436 1.45682 1.06024 1.09755 1.74496 1.20738 0.90222 0.85862 1.01601 1.21733 0.92480 0.94070 1.08574 1.21429 0.81987 0.92447 0.75829 1.90799 1.67895 1.35427 1.46499 1.43454 1.06773 1.07625 1.71867 1.18493 0.88501 0.86535 0.96037 1.21671 0.90778 1.00828 1.14727 1.18050 0.94334 0.91143 0.86303 1.19838 0.91081 0.99894 1.40636 0.89992 1.26804 1.06039 0.93638 0.91452 1.69758 1.40367 1.05839 1.28189 0.85129 0.75205 0.78886 0.79760 1.18707 1.18835 1.18448 1.22109 0.95028 0.99269 1.15566 1.22186 0.92116 0.94411 0.95678 1.67317 1.40159 0.98116 1.24445 0.89234 0.82827 0.81425 0.73827 0.93409 0.93151 0.84258 0.84668 0.73503 0.84966 0.89668 0.86698 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 14.31 66.65 0.95 -0.06 16 2 C -0.22 -2.83 10.03 23.43 0.23 -2.60 16 3 C 0.53 12.12 7.76 86.57 0.67 12.79 16 4 O -0.60 -20.81 16.22 -4.08 -0.07 -20.87 16 5 N -0.71 -12.58 5.55 -466.72 -2.59 -15.18 16 6 C 0.14 3.55 4.96 86.38 0.43 3.97 16 7 C -0.13 -2.52 5.82 29.85 0.17 -2.35 16 8 C 0.50 17.24 7.78 87.66 0.68 17.92 16 9 O -0.53 -24.60 14.28 -3.02 -0.04 -24.64 16 10 N -0.65 -23.71 5.39 -308.65 -1.66 -25.38 16 11 C 0.33 15.97 7.40 132.75 0.98 16.95 16 12 C -0.25 -12.91 8.61 22.98 0.20 -12.71 16 13 C 0.11 5.87 5.60 -21.11 -0.12 5.75 16 14 C -0.48 -24.86 9.14 23.52 0.21 -24.65 16 15 H 0.08 4.04 7.87 -2.91 -0.02 4.02 16 16 C 0.04 1.74 5.31 85.29 0.45 2.19 16 17 N -0.82 -38.85 10.70 21.84 0.23 -38.62 16 18 Si 0.99 35.30 29.57 68.60 2.03 37.33 16 19 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 20 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 21 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 22 C -0.30 -14.85 9.90 22.84 0.23 -14.62 16 23 C 0.11 5.41 11.15 84.50 0.94 6.35 16 24 N -0.58 -30.24 7.89 -193.53 -1.53 -31.76 16 25 H 0.09 1.51 7.49 -2.91 -0.02 1.49 16 26 H 0.15 0.57 8.06 -2.91 -0.02 0.54 16 27 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 28 H 0.42 3.48 8.46 -92.71 -0.78 2.69 16 29 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 30 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 31 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.43 11.86 8.70 -92.71 -0.81 11.06 16 34 H 0.13 6.57 6.11 -2.91 -0.02 6.55 16 35 H 0.29 12.39 8.29 -92.71 -0.77 11.62 16 36 H 0.11 5.28 8.06 -2.91 -0.02 5.25 16 37 H 0.15 6.28 8.06 -2.91 -0.02 6.26 16 Total: -1.00 -80.52 330.32 1.94 -78.58 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: -0.47 Total: 31.62 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.04 Total: 8.93 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -5.55 Total: -110.94 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.11 Total: -45.52 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.03 Total: 37.33 kcal Total: -80.52 1.94 -78.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490735757.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.982 kcal (2) G-P(sol) polarization free energy of solvation -80.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds