Wall clock time and date at job start Tue Mar 31 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47320 * 232.90899 * 3 2 1 5 5 C 1.36785 * 120.00261 * 263.40851 * 4 3 2 6 6 H 1.08006 * 119.99935 * 202.74881 * 5 4 3 7 7 C 1.39094 * 120.00133 * 22.75040 * 5 4 3 8 8 N 1.31332 * 119.99818 * 4.41115 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 184.40456 * 7 5 4 10 10 H 1.48498 * 109.47248 * 59.99884 * 9 7 5 11 11 H 1.48496 * 109.47258 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47195 * 300.00141 * 9 7 5 13 13 C 1.34780 * 119.99916 * 83.12999 * 4 3 2 14 14 O 1.21660 * 120.00446 * 184.12580 * 13 4 3 15 15 C 1.47259 * 119.99812 * 4.12593 * 13 4 3 16 16 C 1.39533 * 121.54265 * 75.22818 * 15 13 4 17 17 C 1.50703 * 121.03484 * 0.03039 * 16 15 13 18 18 C 1.39928 * 117.93147 * 179.80684 * 16 15 13 19 19 C 1.50706 * 119.39942 * 180.20138 * 18 16 15 20 20 N 1.30358 * 121.20140 * 0.49389 * 18 16 15 21 21 N 1.28190 * 123.69273 * 359.73118 * 20 18 16 22 22 C 1.46505 * 119.09480 * 180.02562 * 21 20 18 23 23 C 1.34816 * 121.80781 * 0.02562 * 21 20 18 24 24 O 1.21900 * 120.77583 * 179.97438 * 23 21 20 25 25 H 4.40640 * 5.51358 * 179.97438 * 4 1 2 26 26 H 1.09006 * 109.47098 * 112.90940 * 3 2 1 27 27 H 1.08998 * 109.47320 * 352.91443 * 3 2 1 28 28 H 0.97003 * 120.00227 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.46990 * 95.18135 * 17 16 15 30 30 H 1.08995 * 109.47141 * 215.18435 * 17 16 15 31 31 H 1.08997 * 109.46673 * 335.18495 * 17 16 15 32 32 H 1.09001 * 109.47215 * 180.28157 * 19 18 16 33 33 H 1.09002 * 109.47086 * 300.28437 * 19 18 16 34 34 H 1.09002 * 109.46995 * 60.27937 * 19 18 16 35 35 H 1.09001 * 109.46994 * 270.02051 * 22 21 20 36 36 H 1.08999 * 109.47098 * 30.01468 * 22 21 20 37 37 H 1.08996 * 109.47167 * 150.02082 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8338 1.1017 5 6 3.4896 2.1342 0.8703 6 1 4.1711 2.6354 1.5418 7 6 2.9735 2.8111 -0.2298 8 7 2.0789 2.2316 -0.9970 9 14 3.5528 4.5445 -0.6158 10 1 5.0182 4.5349 -0.8557 11 1 2.8554 5.0408 -1.8293 12 1 3.2448 5.4363 0.5310 13 6 3.2272 0.3207 2.3445 14 8 3.5605 1.0325 3.2732 15 6 2.9255 -1.1016 2.5784 16 6 3.8181 -2.1077 2.2070 17 6 5.1329 -1.7761 1.5493 18 6 3.4567 -3.4339 2.4687 19 6 4.3981 -4.5467 2.0855 20 7 2.3180 -3.7248 3.0327 21 7 1.4569 -2.8455 3.3913 22 6 0.2080 -3.2857 4.0181 23 6 1.6690 -1.5269 3.2074 24 8 0.8368 -0.7069 3.5552 25 1 -1.0502 0.0000 -0.0004 26 1 3.0091 0.4009 -0.9467 27 1 3.0097 -1.0190 0.1268 28 1 1.7192 2.7035 -1.7644 29 1 5.9162 -1.7303 2.3058 30 1 5.3780 -2.5466 0.8184 31 1 5.0551 -0.8113 1.0480 32 1 3.9564 -5.5057 2.3563 33 1 4.5750 -4.5188 1.0102 34 1 5.3437 -4.4202 2.6126 35 1 -0.5456 -3.4528 3.2484 36 1 0.3823 -4.2133 4.5632 37 1 -0.1420 -2.5185 4.7087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490964060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:10 Heat of formation + Delta-G solvation = 68.480534 kcal Electronic energy + Delta-G solvation = -23760.976924 eV Core-core repulsion = 20314.561638 eV Total energy + Delta-G solvation = -3446.415287 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55780 -38.67028 -37.58487 -35.54199 -35.11928 -32.37844 -31.76865 -31.12957 -30.25354 -27.80260 -26.59063 -26.19930 -25.14095 -23.36938 -21.93163 -19.79629 -18.16825 -17.79223 -17.12855 -16.50082 -16.46047 -16.00919 -15.39948 -14.69636 -14.20986 -14.05291 -13.91254 -13.67447 -13.12047 -12.96425 -12.89561 -12.66399 -12.51285 -12.43833 -12.22761 -12.04987 -11.92097 -11.85877 -11.42613 -11.05115 -10.84902 -10.58504 -10.41275 -9.57848 -9.49522 -9.44283 -9.24428 -8.81893 -8.59977 -7.98446 -7.87716 -6.34192 -3.96690 0.73252 1.91289 2.40463 3.15180 3.22916 3.25460 3.51565 3.58131 3.92053 4.07354 4.18334 4.27291 4.62970 4.81168 4.94970 5.05425 5.15152 5.25655 5.30082 5.47922 5.51446 5.57122 5.60992 5.65939 5.75714 5.84599 5.87800 6.09297 6.19170 6.24071 6.35139 6.49693 6.84628 7.10095 7.48355 7.95600 8.02188 8.37128 8.44725 8.87406 9.04249 9.24946 9.80480 10.64120 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.006135 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.378082 B = 4562.685529 C = 4965.254223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.112 4.112 3 C 0.230 3.770 4 N -0.424 5.424 5 C -0.308 4.308 6 H 0.104 0.896 7 C 0.032 3.968 8 N -0.869 5.869 9 Si 0.933 3.067 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.510 3.490 14 O -0.565 6.565 15 C -0.147 4.147 16 C -0.043 4.043 17 C -0.124 4.124 18 C 0.071 3.929 19 C -0.083 4.083 20 N -0.238 5.238 21 N -0.354 5.354 22 C 0.087 3.913 23 C 0.495 3.505 24 O -0.505 6.505 25 H 0.197 0.803 26 H 0.126 0.874 27 H 0.053 0.947 28 H 0.271 0.729 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -14.761 0.656 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.113 4.113 3 C 0.107 3.893 4 N -0.141 5.141 5 C -0.436 4.436 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.507 5.507 9 Si 0.759 3.241 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.297 3.703 14 O -0.448 6.448 15 C -0.163 4.163 16 C -0.049 4.049 17 C -0.181 4.181 18 C -0.101 4.101 19 C -0.142 4.142 20 N -0.061 5.061 21 N -0.175 5.175 22 C -0.054 4.054 23 C 0.290 3.710 24 O -0.379 6.379 25 H 0.215 0.785 26 H 0.143 0.857 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.885 -14.489 1.453 14.683 hybrid contribution -0.098 1.612 -0.494 1.688 sum 1.787 -12.877 0.959 13.036 Atomic orbital electron populations 1.24233 0.95382 1.05338 1.03059 1.23138 0.94377 0.95955 0.97872 1.18453 0.84382 0.92250 0.94201 1.43527 1.54780 1.11318 1.04505 1.19666 1.25653 0.87359 1.10884 0.87802 1.25449 0.95091 0.99939 0.96721 1.69913 1.26552 1.37702 1.16551 0.85893 0.78671 0.81632 0.77900 1.19694 1.20877 1.19752 1.17069 0.84758 0.84854 0.83612 1.90666 1.52468 1.59867 1.41760 1.22913 0.94080 0.96843 1.02464 1.21343 0.97025 0.91624 0.94941 1.20980 0.92393 1.04068 1.00646 1.21397 0.92884 0.94411 1.01392 1.20528 0.96562 0.94943 1.02147 1.70223 1.01014 1.24767 1.10122 1.46369 1.16832 1.04218 1.50045 1.22032 0.82297 1.02164 0.98875 1.19022 0.88285 0.82115 0.81578 1.90940 1.46117 1.50416 1.50416 0.78539 0.85653 0.92927 0.91799 0.89688 0.90058 0.89508 0.90463 0.90012 0.90127 0.90536 0.89088 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -6.06 19.25 29.55 0.57 -5.49 16 2 C -0.11 -2.74 11.47 -37.12 -0.43 -3.17 16 3 C 0.23 5.34 4.50 -6.83 -0.03 5.31 16 4 N -0.42 -11.06 2.15 -119.22 -0.26 -11.31 16 5 C -0.31 -8.51 9.28 -15.02 -0.14 -8.65 16 6 H 0.10 2.95 7.43 -52.48 -0.39 2.56 16 7 C 0.03 0.84 5.23 -17.45 -0.09 0.75 16 8 N -0.87 -22.85 8.87 55.50 0.49 -22.36 16 9 Si 0.93 20.59 29.56 -169.99 -5.02 15.57 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.51 13.43 5.61 -12.59 -0.07 13.36 16 14 O -0.56 -16.95 16.83 5.22 0.09 -16.86 16 15 C -0.15 -3.23 4.47 -102.28 -0.46 -3.69 16 16 C -0.04 -0.72 4.99 -103.51 -0.52 -1.24 16 17 C -0.12 -1.70 8.81 36.01 0.32 -1.38 16 18 C 0.07 1.00 6.86 -82.58 -0.57 0.43 16 19 C -0.08 -0.73 9.07 36.01 0.33 -0.40 16 20 N -0.24 -3.61 10.68 33.61 0.36 -3.25 16 21 N -0.35 -6.09 3.62 -68.32 -0.25 -6.34 16 22 C 0.09 1.11 10.59 59.85 0.63 1.74 16 23 C 0.49 10.88 7.67 -12.77 -0.10 10.79 16 24 O -0.50 -12.86 16.35 5.01 0.08 -12.78 16 25 H 0.20 3.83 7.80 -54.08 -0.42 3.41 16 26 H 0.13 2.98 6.22 -51.93 -0.32 2.66 16 27 H 0.05 1.06 5.51 -51.93 -0.29 0.77 16 28 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.08 0.80 6.96 -51.93 -0.36 0.44 16 31 H 0.09 1.44 6.05 -51.93 -0.31 1.12 16 32 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.08 0.58 7.56 -51.93 -0.39 0.19 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.27 7.38 -51.93 -0.38 0.88 16 LS Contribution 321.06 15.07 4.84 4.84 Total: -1.00 -36.34 321.06 -4.34 -40.68 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.12 Total: 3.46 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -0.55 Total: 8.36 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.35 Total: -43.26 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: 0.17 Total: -29.64 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.34 -4.34 -40.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.158 kcal (2) G-P(sol) polarization free energy of solvation -36.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds