Wall clock time and date at job start Tue Mar 31 2020 02:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47320 * 232.90899 * 3 2 1 5 5 C 1.36785 * 120.00261 * 263.40851 * 4 3 2 6 6 H 1.08006 * 119.99935 * 202.74881 * 5 4 3 7 7 C 1.39094 * 120.00133 * 22.75040 * 5 4 3 8 8 N 1.31332 * 119.99818 * 4.41115 * 7 5 4 9 9 Si 1.86797 * 120.00074 * 184.40456 * 7 5 4 10 10 H 1.48498 * 109.47248 * 59.99884 * 9 7 5 11 11 H 1.48496 * 109.47258 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47195 * 300.00141 * 9 7 5 13 13 C 1.34780 * 119.99916 * 83.12999 * 4 3 2 14 14 O 1.21660 * 120.00446 * 184.12580 * 13 4 3 15 15 C 1.47259 * 119.99812 * 4.12593 * 13 4 3 16 16 C 1.39533 * 121.54265 * 75.22818 * 15 13 4 17 17 C 1.50703 * 121.03484 * 0.03039 * 16 15 13 18 18 C 1.39928 * 117.93147 * 179.80684 * 16 15 13 19 19 C 1.50706 * 119.39942 * 180.20138 * 18 16 15 20 20 N 1.30358 * 121.20140 * 0.49389 * 18 16 15 21 21 N 1.28190 * 123.69273 * 359.73118 * 20 18 16 22 22 C 1.46505 * 119.09480 * 180.02562 * 21 20 18 23 23 C 1.34816 * 121.80781 * 0.02562 * 21 20 18 24 24 O 1.21900 * 120.77583 * 179.97438 * 23 21 20 25 25 H 4.40640 * 5.51358 * 179.97438 * 4 1 2 26 26 H 1.09006 * 109.47098 * 112.90940 * 3 2 1 27 27 H 1.08998 * 109.47320 * 352.91443 * 3 2 1 28 28 H 0.97003 * 120.00227 * 180.02562 * 8 7 5 29 29 H 1.08995 * 109.46990 * 95.18135 * 17 16 15 30 30 H 1.08995 * 109.47141 * 215.18435 * 17 16 15 31 31 H 1.08997 * 109.46673 * 335.18495 * 17 16 15 32 32 H 1.09001 * 109.47215 * 180.28157 * 19 18 16 33 33 H 1.09002 * 109.47086 * 300.28437 * 19 18 16 34 34 H 1.09002 * 109.46995 * 60.27937 * 19 18 16 35 35 H 1.09001 * 109.46994 * 270.02051 * 22 21 20 36 36 H 1.08999 * 109.47098 * 30.01468 * 22 21 20 37 37 H 1.08996 * 109.47167 * 150.02082 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.8338 1.1017 5 6 3.4896 2.1342 0.8703 6 1 4.1711 2.6354 1.5418 7 6 2.9735 2.8111 -0.2298 8 7 2.0789 2.2316 -0.9970 9 14 3.5528 4.5445 -0.6158 10 1 5.0182 4.5349 -0.8557 11 1 2.8554 5.0408 -1.8293 12 1 3.2448 5.4363 0.5310 13 6 3.2272 0.3207 2.3445 14 8 3.5605 1.0325 3.2732 15 6 2.9255 -1.1016 2.5784 16 6 3.8181 -2.1077 2.2070 17 6 5.1329 -1.7761 1.5493 18 6 3.4567 -3.4339 2.4687 19 6 4.3981 -4.5467 2.0855 20 7 2.3180 -3.7248 3.0327 21 7 1.4569 -2.8455 3.3913 22 6 0.2080 -3.2857 4.0181 23 6 1.6690 -1.5269 3.2074 24 8 0.8368 -0.7069 3.5552 25 1 -1.0502 0.0000 -0.0004 26 1 3.0091 0.4009 -0.9467 27 1 3.0097 -1.0190 0.1268 28 1 1.7192 2.7035 -1.7644 29 1 5.9162 -1.7303 2.3058 30 1 5.3780 -2.5466 0.8184 31 1 5.0551 -0.8113 1.0480 32 1 3.9564 -5.5057 2.3563 33 1 4.5750 -4.5188 1.0102 34 1 5.3437 -4.4202 2.6126 35 1 -0.5456 -3.4528 3.2484 36 1 0.3823 -4.2133 4.5632 37 1 -0.1420 -2.5185 4.7087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490964060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:09 Heat of formation + Delta-G solvation = 42.536635 kcal Electronic energy + Delta-G solvation = -23762.101936 eV Core-core repulsion = 20314.561638 eV Total energy + Delta-G solvation = -3447.540299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.95281 -40.55050 -39.09686 -37.20802 -36.84705 -34.14875 -33.37702 -32.96838 -31.37920 -28.96573 -28.47365 -27.58682 -26.73804 -24.92379 -23.26023 -21.51210 -19.88010 -19.49721 -18.72717 -18.30701 -17.87958 -17.57639 -17.02477 -16.52110 -16.02357 -15.78130 -15.05052 -14.92178 -14.67035 -14.54575 -14.28398 -14.14813 -13.90027 -13.66093 -13.60822 -13.45462 -13.31877 -12.86667 -12.82912 -12.75183 -12.61516 -12.24724 -12.16964 -11.39030 -11.30305 -11.05433 -10.82986 -10.69931 -10.48518 -9.91483 -9.41504 -8.34318 -6.06632 -0.69569 0.53402 1.03899 1.38002 1.40700 1.50706 1.74007 1.98447 2.22044 2.23973 2.32342 2.78975 3.03504 3.11577 3.45783 3.65157 3.76731 3.81603 4.20973 4.31630 4.35246 4.45631 4.52614 4.53859 4.62712 4.68421 4.87987 4.92704 4.96764 5.03007 5.13132 5.19348 5.30662 5.37444 5.50376 5.96413 6.36242 6.50095 7.01035 7.02158 7.11468 7.25577 7.82047 8.61834 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.006135 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.378082 B = 4562.685529 C = 4965.254223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.147 4.147 3 C 0.238 3.762 4 N -0.429 5.429 5 C -0.348 4.348 6 H 0.081 0.919 7 C 0.001 3.999 8 N -0.879 5.879 9 Si 0.996 3.004 10 H -0.256 1.256 11 H -0.270 1.270 12 H -0.285 1.285 13 C 0.506 3.494 14 O -0.624 6.624 15 C -0.214 4.214 16 C 0.000 4.000 17 C -0.129 4.129 18 C 0.075 3.925 19 C -0.083 4.083 20 N -0.226 5.226 21 N -0.348 5.348 22 C 0.079 3.921 23 C 0.483 3.517 24 O -0.566 6.566 25 H 0.227 0.773 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.275 0.725 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.027 -17.844 -0.727 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.148 4.148 3 C 0.116 3.884 4 N -0.145 5.145 5 C -0.476 4.476 6 H 0.098 0.902 7 C -0.202 4.202 8 N -0.516 5.516 9 Si 0.819 3.181 10 H -0.180 1.180 11 H -0.194 1.194 12 H -0.211 1.211 13 C 0.295 3.705 14 O -0.511 6.511 15 C -0.229 4.229 16 C -0.007 4.007 17 C -0.186 4.186 18 C -0.096 4.096 19 C -0.142 4.142 20 N -0.050 5.050 21 N -0.166 5.166 22 C -0.060 4.060 23 C 0.280 3.720 24 O -0.446 6.446 25 H 0.244 0.756 26 H 0.134 0.866 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.125 0.875 30 H 0.152 0.848 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.147 0.853 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.014 -17.657 0.028 17.913 hybrid contribution -0.390 2.377 -0.074 2.410 sum 2.624 -15.281 -0.046 15.504 Atomic orbital electron populations 1.25076 0.96462 1.04313 1.01959 1.23639 0.95336 0.96965 0.98899 1.18455 0.84028 0.93165 0.92748 1.43657 1.54337 1.11139 1.05380 1.19672 1.27256 0.88836 1.11798 0.90155 1.26197 0.94791 1.03347 0.95821 1.70026 1.26405 1.38804 1.16414 0.84965 0.79231 0.76556 0.77363 1.17984 1.19425 1.21144 1.17657 0.83311 0.86673 0.82824 1.90583 1.54963 1.62199 1.43379 1.22479 0.96816 0.95389 1.08231 1.21910 0.96409 0.91691 0.90709 1.21219 0.91155 1.04168 1.02025 1.22359 0.93028 0.94645 0.99578 1.20841 0.96036 0.93178 1.04101 1.70448 1.01217 1.23336 1.09961 1.46580 1.18140 1.02852 1.49077 1.22370 0.81035 1.03236 0.99361 1.19162 0.87888 0.83443 0.81493 1.90880 1.47910 1.52199 1.53613 0.75601 0.86568 0.90065 0.91464 0.87452 0.84775 0.92665 0.88795 0.87338 0.87596 0.89049 0.85262 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.10 19.25 74.32 1.43 -10.66 16 2 C -0.15 -7.32 11.47 31.13 0.36 -6.97 16 3 C 0.24 11.29 4.50 84.58 0.38 11.67 16 4 N -0.43 -23.42 2.15 -649.34 -1.40 -24.82 16 5 C -0.35 -20.21 9.28 84.13 0.78 -19.43 16 6 H 0.08 4.90 7.43 -2.91 -0.02 4.88 16 7 C 0.00 0.07 5.23 84.97 0.44 0.52 16 8 N -0.88 -46.82 8.87 21.69 0.19 -46.63 16 9 Si 1.00 42.88 29.56 68.60 2.03 44.91 16 10 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 11 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 12 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 13 C 0.51 28.14 5.61 86.61 0.49 28.62 16 14 O -0.62 -40.26 16.83 -4.22 -0.07 -40.33 16 15 C -0.21 -9.61 4.47 -18.35 -0.08 -9.69 16 16 C 0.00 -0.01 4.99 -19.14 -0.10 -0.11 16 17 C -0.13 -3.16 8.81 71.24 0.63 -2.53 16 18 C 0.08 1.81 6.86 43.19 0.30 2.11 16 19 C -0.08 -0.94 9.07 71.24 0.65 -0.29 16 20 N -0.23 -6.17 10.68 -47.57 -0.51 -6.68 16 21 N -0.35 -11.62 3.62 -488.16 -1.77 -13.38 16 22 C 0.08 1.91 10.59 127.77 1.35 3.27 16 23 C 0.48 21.86 7.67 86.48 0.66 22.52 16 24 O -0.57 -30.63 16.35 -4.99 -0.08 -30.71 16 25 H 0.23 8.63 7.80 -4.41 -0.03 8.59 16 26 H 0.12 5.64 6.22 -2.38 -0.01 5.62 16 27 H 0.08 3.25 5.51 -2.39 -0.01 3.24 16 28 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 29 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.13 1.87 6.96 -2.39 -0.02 1.86 16 31 H 0.05 1.79 6.05 -2.39 -0.01 1.77 16 32 H 0.09 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.11 0.77 7.56 -2.39 -0.02 0.75 16 34 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.25 7.38 -2.39 -0.02 2.24 16 Total: -1.00 -87.50 321.06 6.79 -80.71 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 1.10 Total: 17.92 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 7.29 Total: 19.01 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -3.48 Total: -91.51 kcal Atomic # 8 Polarization: -70.89 SS G_CDS: -0.15 Total: -71.04 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -87.50 6.79 -80.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490964060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.251 kcal (2) G-P(sol) polarization free energy of solvation -87.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds