Wall clock time and date at job start Tue Mar 31 2020 03:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37096 * 120.00455 * 2 1 4 4 H 1.07998 * 120.00095 * 203.90522 * 3 2 1 5 5 C 1.38948 * 119.99928 * 23.89692 * 3 2 1 6 6 N 1.31413 * 120.00227 * 0.66567 * 5 3 2 7 7 Si 1.86799 * 120.00031 * 180.66055 * 5 3 2 8 8 H 1.48498 * 109.47184 * 0.02562 * 7 5 3 9 9 H 1.48492 * 109.47243 * 120.00293 * 7 5 3 10 10 H 1.48506 * 109.47297 * 240.00609 * 7 5 3 11 11 C 1.34781 * 119.99501 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99757 * 180.02562 * 11 2 1 13 13 C 1.50697 * 120.00168 * 359.97438 * 11 2 1 14 14 N 1.46500 * 109.47318 * 180.02562 * 13 11 2 15 15 C 1.34774 * 120.00084 * 179.97438 * 14 13 11 16 16 O 1.21691 * 120.00155 * 0.02562 * 15 14 13 17 17 C 1.46427 * 120.00135 * 180.27298 * 15 14 13 18 18 C 1.34800 * 120.00371 * 172.89700 * 17 15 14 19 19 C 1.47212 * 119.99853 * 348.46266 * 18 17 15 20 20 C 1.40269 * 120.58422 * 137.15454 * 19 18 17 21 21 C 1.38287 * 118.26257 * 179.97438 * 20 19 18 22 22 C 1.38384 * 119.33825 * 0.02562 * 21 20 19 23 23 N 1.31944 * 121.13787 * 359.97438 * 22 21 20 24 24 C 1.31653 * 121.90231 * 359.72667 * 23 22 21 25 25 H 1.09001 * 109.47487 * 271.85946 * 1 2 3 26 26 H 1.09000 * 109.46715 * 31.85445 * 1 2 3 27 27 H 1.09000 * 109.47420 * 151.85758 * 1 2 3 28 28 H 0.96993 * 120.00054 * 179.97438 * 6 5 3 29 29 H 1.09002 * 109.47328 * 59.99896 * 13 11 2 30 30 H 1.09000 * 109.46921 * 300.00300 * 13 11 2 31 31 H 0.97003 * 119.99897 * 359.97438 * 14 13 11 32 32 H 1.08004 * 119.99769 * 352.90093 * 17 15 14 33 33 H 1.08002 * 119.99963 * 168.45629 * 18 17 15 34 34 H 1.07998 * 120.86844 * 359.95703 * 20 19 18 35 35 H 1.08006 * 120.32747 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.43246 * 179.97438 * 22 21 20 37 37 H 1.08004 * 119.73786 * 180.28810 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1611 1.2273 -0.3790 5 6 1.5452 2.3390 0.4875 6 7 0.3203 2.2877 0.9606 7 14 2.4727 3.9604 0.4704 8 1 3.8239 3.7517 -0.1092 9 1 1.7288 4.9476 -0.3523 10 1 2.6027 4.4710 1.8589 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1674 -0.0001 13 6 1.3852 -2.4723 -0.0005 14 7 2.3371 -3.5859 -0.0005 15 6 1.8878 -4.8566 0.0000 16 8 0.6914 -5.0789 0.0000 17 6 2.8392 -5.9696 0.0060 18 6 2.3960 -7.2344 0.1509 19 6 1.0026 -7.4844 0.5547 20 6 0.2481 -8.4889 -0.0690 21 6 -1.0560 -8.6829 0.3483 22 6 -1.5703 -7.8878 1.3574 23 7 -0.8380 -6.9496 1.9271 24 6 0.4099 -6.7286 1.5705 25 1 -0.3634 0.0333 1.0271 26 1 -0.3633 0.8729 -0.5424 27 1 -0.3634 -0.9062 -0.4847 28 1 -0.1021 3.0917 1.3012 29 1 0.7582 -2.5299 -0.8903 30 1 0.7589 -2.5302 0.8897 31 1 3.2908 -3.4087 -0.0009 32 1 3.8961 -5.7772 -0.1055 33 1 3.0632 -8.0644 -0.0293 34 1 0.6743 -9.0949 -0.8549 35 1 -1.6669 -9.4474 -0.1087 36 1 -2.5887 -8.0377 1.6842 37 1 0.9789 -5.9543 2.0636 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491400796.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:50 Heat of formation + Delta-G solvation = -17.223310 kcal Electronic energy + Delta-G solvation = -21971.544735 eV Core-core repulsion = 18521.413051 eV Total energy + Delta-G solvation = -3450.131684 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45125 -40.69026 -39.87532 -36.91560 -35.62098 -35.02059 -33.71880 -32.99852 -31.11338 -29.42937 -27.97430 -26.23720 -25.05224 -24.29833 -22.86039 -21.19294 -20.53252 -19.00387 -18.65925 -17.94360 -17.48716 -17.35648 -16.87816 -16.69221 -16.38715 -15.93029 -15.67475 -15.36440 -15.06462 -14.58304 -14.31118 -14.17073 -13.94891 -13.88860 -13.65103 -13.43399 -13.23088 -12.98483 -12.74586 -12.59948 -12.36307 -12.12061 -11.31874 -11.07611 -11.03675 -10.59030 -10.55436 -10.23958 -10.03865 -9.80725 -9.22888 -8.35523 -6.06231 -0.33231 0.50108 0.84243 1.34544 1.40696 1.54564 1.86745 2.08012 2.30652 2.32290 3.00051 3.02327 3.06346 3.58813 3.77622 3.84229 3.93872 4.07140 4.09726 4.27037 4.32536 4.39547 4.57683 4.60140 4.70410 4.90528 5.02380 5.05532 5.18503 5.27520 5.35139 5.37411 5.39902 5.44471 5.88623 6.02224 6.37479 6.56961 7.06382 7.15571 7.20415 7.36337 7.86296 8.64106 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.032509 B = 0.003170 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.086255 B = 8829.644460 C = 9463.009519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.454 5.454 3 C -0.343 4.343 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.897 5.897 7 Si 0.996 3.004 8 H -0.271 1.271 9 H -0.267 1.267 10 H -0.275 1.275 11 C 0.431 3.569 12 O -0.621 6.621 13 C 0.127 3.873 14 N -0.704 5.704 15 C 0.531 3.469 16 O -0.572 6.572 17 C -0.212 4.212 18 C -0.006 4.006 19 C -0.134 4.134 20 C -0.062 4.062 21 C -0.182 4.182 22 C 0.082 3.918 23 N -0.532 5.532 24 C 0.155 3.845 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.274 0.726 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.414 0.586 32 H 0.169 0.831 33 H 0.186 0.814 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -20.907 -2.581 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.172 5.172 3 C -0.471 4.471 4 H 0.097 0.903 5 C -0.205 4.205 6 N -0.536 5.536 7 Si 0.819 3.181 8 H -0.196 1.196 9 H -0.192 1.192 10 H -0.200 1.200 11 C 0.219 3.781 12 O -0.508 6.508 13 C -0.001 4.001 14 N -0.357 5.357 15 C 0.322 3.678 16 O -0.453 6.453 17 C -0.232 4.232 18 C -0.026 4.026 19 C -0.136 4.136 20 C -0.088 4.088 21 C -0.202 4.202 22 C -0.073 4.073 23 N -0.242 5.242 24 C -0.003 4.003 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.252 0.748 32 H 0.186 0.814 33 H 0.203 0.797 34 H 0.185 0.815 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.891 -20.338 -1.849 20.442 hybrid contribution 0.815 1.080 -0.437 1.422 sum -0.076 -19.258 -2.286 19.393 Atomic orbital electron populations 1.21555 0.79167 1.00255 1.01300 1.43789 1.06895 1.04661 1.61897 1.19736 0.99937 0.85826 1.41602 0.90318 1.26204 0.96940 1.02887 0.94462 1.70098 1.13211 1.30674 1.39597 0.84835 0.78211 0.76814 0.78240 1.19560 1.19188 1.19999 1.20579 0.88024 0.85935 0.83513 1.90451 1.15114 1.87400 1.57885 1.20731 0.91711 0.84276 1.03356 1.45792 1.11259 1.04764 1.73839 1.19186 0.89250 0.83412 0.75999 1.90847 1.17973 1.84699 1.51827 1.23124 1.00508 0.91488 1.08084 1.22658 0.92660 0.97225 0.90080 1.20187 0.96658 0.98101 0.98689 1.22061 0.93997 0.94907 0.97790 1.22326 0.96847 1.02208 0.98777 1.23237 1.00166 0.90683 0.93212 1.67514 1.07206 1.19062 1.30379 1.22634 0.90644 0.93634 0.93406 0.93592 0.91580 0.92335 0.91579 0.89196 0.89787 0.74814 0.81401 0.79685 0.81524 0.81648 0.81317 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.50 8.50 127.77 1.09 6.58 16 2 N -0.45 -23.58 3.02 -658.90 -1.99 -25.57 16 3 C -0.34 -19.32 9.29 84.04 0.78 -18.54 16 4 H 0.08 4.66 7.41 -2.91 -0.02 4.64 16 5 C 0.00 -0.17 5.31 84.93 0.45 0.28 16 6 N -0.90 -47.30 10.21 21.66 0.22 -47.08 16 7 Si 1.00 42.14 29.55 68.60 2.03 44.17 16 8 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 9 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 11 C 0.43 20.83 7.70 87.66 0.67 21.51 16 12 O -0.62 -33.08 15.37 -3.06 -0.05 -33.13 16 13 C 0.13 4.92 4.68 85.63 0.40 5.32 16 14 N -0.70 -23.46 5.52 -471.09 -2.60 -26.07 16 15 C 0.53 16.02 6.78 86.38 0.59 16.61 16 16 O -0.57 -20.66 12.17 -4.32 -0.05 -20.71 16 17 C -0.21 -4.22 9.91 23.61 0.23 -3.98 16 18 C -0.01 -0.10 9.84 23.84 0.23 0.13 16 19 C -0.13 -3.03 4.56 -20.05 -0.09 -3.13 16 20 C -0.06 -1.11 9.95 22.78 0.23 -0.88 16 21 C -0.18 -3.23 10.09 22.32 0.23 -3.00 16 22 C 0.08 1.91 11.17 84.71 0.95 2.85 16 23 N -0.53 -16.41 10.34 -194.52 -2.01 -18.42 16 24 C 0.15 4.58 7.80 85.10 0.66 5.24 16 25 H 0.05 2.18 7.62 -2.39 -0.02 2.16 16 26 H 0.07 3.19 6.81 -2.39 -0.02 3.17 16 27 H 0.06 2.24 6.37 -2.39 -0.02 2.22 16 28 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 29 H 0.09 3.33 7.40 -2.39 -0.02 3.31 16 30 H 0.08 3.28 8.11 -2.39 -0.02 3.26 16 31 H 0.41 13.39 7.42 -92.71 -0.69 12.70 16 32 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 34 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.13 3.95 7.00 -2.91 -0.02 3.93 16 Total: -1.00 -73.72 319.82 2.38 -71.34 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.42 Total: 26.47 kcal Atomic # 6 Polarization: 22.58 SS G_CDS: 6.42 Total: 29.00 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -6.39 Total: -117.14 kcal Atomic # 8 Polarization: -53.74 SS G_CDS: -0.10 Total: -53.84 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -73.72 2.38 -71.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491400796.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.115 kcal (2) G-P(sol) polarization free energy of solvation -73.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds