Wall clock time and date at job start Tue Mar 31 2020 03:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37089 * 119.99907 * 2 1 4 4 H 1.08004 * 119.99779 * 204.39403 * 3 2 1 5 5 C 1.38944 * 120.00360 * 24.39520 * 3 2 1 6 6 N 1.31413 * 120.00064 * 12.63673 * 5 3 2 7 7 Si 1.86802 * 120.00258 * 192.64585 * 5 3 2 8 8 H 1.48501 * 109.47330 * 89.99417 * 7 5 3 9 9 H 1.48495 * 109.47290 * 209.99694 * 7 5 3 10 10 H 1.48503 * 109.46996 * 329.99711 * 7 5 3 11 11 C 1.34778 * 119.99700 * 180.02562 * 2 1 3 12 12 O 1.21300 * 119.99983 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00409 * 359.97438 * 11 2 1 14 14 N 1.46496 * 109.47519 * 180.02562 * 13 11 2 15 15 C 1.34777 * 120.00284 * 180.02562 * 14 13 11 16 16 O 1.21691 * 120.00098 * 359.97438 * 15 14 13 17 17 C 1.46426 * 120.00102 * 180.02562 * 15 14 13 18 18 C 1.34799 * 120.00152 * 179.97438 * 17 15 14 19 19 C 1.47212 * 120.00277 * 179.71955 * 18 17 15 20 20 C 1.40260 * 120.58696 * 180.27155 * 19 18 17 21 21 C 1.38284 * 118.26859 * 179.97438 * 20 19 18 22 22 C 1.38395 * 119.33203 * 0.02562 * 21 20 19 23 23 N 1.31936 * 121.14220 * 0.02562 * 22 21 20 24 24 C 1.31663 * 121.89760 * 359.68425 * 23 22 21 25 25 H 1.08996 * 109.46542 * 265.86406 * 1 2 3 26 26 H 1.08993 * 109.47014 * 25.86847 * 1 2 3 27 27 H 1.08994 * 109.46839 * 145.86893 * 1 2 3 28 28 H 0.96995 * 120.00367 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.46992 * 60.00431 * 13 11 2 30 30 H 1.08999 * 109.47394 * 300.00619 * 13 11 2 31 31 H 0.97001 * 119.99655 * 0.02562 * 14 13 11 32 32 H 1.08010 * 119.99935 * 359.97438 * 17 15 14 33 33 H 1.08000 * 120.00004 * 359.97438 * 18 17 15 34 34 H 1.08002 * 120.87170 * 359.96261 * 20 19 18 35 35 H 1.08005 * 120.33822 * 180.02562 * 21 20 19 36 36 H 1.08005 * 119.43346 * 179.97438 * 22 21 20 37 37 H 1.08006 * 119.73275 * 180.28948 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5489 2.3369 0.4970 6 7 0.4346 2.2491 1.1881 7 14 2.3237 4.0072 0.1825 8 1 1.7869 4.5719 -1.0817 9 1 2.0035 4.9213 1.3082 10 1 3.7969 3.8564 0.0711 11 6 2.1389 -1.1672 -0.0005 12 8 3.3519 -1.1673 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 7 2.3374 -3.5859 -0.0005 15 6 1.8881 -4.8566 -0.0010 16 8 0.6917 -5.0790 -0.0010 17 6 2.8396 -5.9695 -0.0005 18 6 2.3903 -7.2404 -0.0005 19 6 3.3468 -8.3594 -0.0061 20 6 2.8928 -9.6865 -0.0119 21 6 3.8332 -10.7004 -0.0177 22 6 5.1788 -10.3770 -0.0170 23 7 5.5784 -9.1196 -0.0104 24 6 4.7238 -8.1180 -0.0105 25 1 -0.3632 -0.0741 1.0250 26 1 -0.3633 0.9246 -0.4483 27 1 -0.3633 -0.8506 -0.5766 28 1 0.0148 3.0516 1.5354 29 1 0.7585 -2.5299 -0.8903 30 1 0.7590 -2.5303 0.8896 31 1 3.2910 -3.4086 -0.0001 32 1 3.9015 -5.7722 -0.0001 33 1 1.3285 -7.4378 -0.0005 34 1 1.8363 -9.9107 -0.0117 35 1 3.5207 -11.7342 -0.0226 36 1 5.9146 -11.1676 -0.0210 37 1 5.0896 -7.1018 -0.0097 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491400797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:53 Heat of formation + Delta-G solvation = -8.941590 kcal Electronic energy + Delta-G solvation = -21092.650959 eV Core-core repulsion = 17642.878397 eV Total energy + Delta-G solvation = -3449.772562 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45330 -39.57923 -38.33550 -35.07298 -34.71790 -33.85946 -32.63387 -31.75421 -30.28817 -27.91280 -26.18929 -24.90335 -24.08681 -23.73010 -21.52773 -19.80417 -19.13090 -17.90341 -17.30356 -16.93477 -16.33848 -15.81921 -15.64511 -15.31625 -15.01301 -14.54766 -14.32080 -14.19700 -14.01321 -13.99789 -13.45958 -13.35101 -12.50172 -12.31810 -12.12543 -12.06431 -11.59812 -11.41411 -11.33455 -11.04956 -10.92205 -10.40811 -10.37295 -10.02348 -9.91434 -9.77934 -9.09790 -8.91828 -8.62354 -8.61531 -7.78561 -6.41140 -3.98660 0.14426 0.88509 1.73599 3.11265 3.20920 3.25046 3.31243 3.36211 3.60818 3.73922 4.04344 4.09005 4.41777 4.45718 4.51410 4.63538 4.79546 4.89754 5.03755 5.06832 5.20147 5.41051 5.62031 5.62518 5.69678 5.84251 5.95213 6.09744 6.13312 6.29199 6.31853 6.62098 6.78151 7.13384 7.48738 7.59568 7.78161 8.01207 8.35031 8.41085 9.05709 9.29480 9.81422 10.63409 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.042430 B = 0.002442 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.755479 B =11460.991676 C =12040.291282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.436 5.436 3 C -0.309 4.309 4 H 0.100 0.900 5 C 0.032 3.968 6 N -0.878 5.878 7 Si 0.929 3.071 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.434 3.566 12 O -0.591 6.591 13 C 0.109 3.891 14 N -0.700 5.700 15 C 0.542 3.458 16 O -0.553 6.553 17 C -0.186 4.186 18 C -0.034 4.034 19 C -0.118 4.118 20 C -0.057 4.057 21 C -0.174 4.174 22 C 0.100 3.900 23 N -0.484 5.484 24 C 0.115 3.885 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.030 0.970 28 H 0.269 0.731 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.412 0.588 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.157 0.843 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 -20.747 -2.257 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.153 5.153 3 C -0.437 4.437 4 H 0.118 0.882 5 C -0.172 4.172 6 N -0.516 5.516 7 Si 0.756 3.244 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.222 3.778 12 O -0.477 6.477 13 C -0.019 4.019 14 N -0.353 5.353 15 C 0.330 3.670 16 O -0.434 6.434 17 C -0.207 4.207 18 C -0.055 4.055 19 C -0.120 4.120 20 C -0.083 4.083 21 C -0.194 4.194 22 C -0.056 4.056 23 N -0.192 5.192 24 C -0.043 4.043 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.250 0.750 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.827 -20.501 -2.154 20.807 hybrid contribution -0.393 0.829 0.003 0.917 sum 2.434 -19.672 -2.151 19.938 Atomic orbital electron populations 1.21582 0.80841 1.00354 1.01043 1.43523 1.05705 1.04583 1.61537 1.19667 1.00766 0.83883 1.39418 0.88218 1.25397 0.96582 1.00322 0.94913 1.69991 1.19055 1.29894 1.32703 0.85877 0.79668 0.80973 0.77905 1.20261 1.20871 1.19283 1.19917 0.88116 0.84897 0.84873 1.90495 1.13708 1.86638 1.56855 1.21067 0.91842 0.85724 1.03221 1.45672 1.11753 1.04699 1.73172 1.18209 0.88465 0.83134 0.77203 1.90795 1.16429 1.85128 1.51056 1.23026 1.00076 0.92951 1.04653 1.22163 0.99308 0.90714 0.93291 1.20077 0.94800 0.94034 1.03062 1.21844 1.00692 0.91513 0.94219 1.22117 0.94353 1.00612 1.02295 1.22928 0.94621 0.93723 0.94332 1.67680 1.39381 1.00212 1.11911 1.23226 0.88630 0.98855 0.93574 0.92571 0.90384 0.95184 0.92035 0.89852 0.89563 0.74989 0.85085 0.84264 0.84205 0.84427 0.82612 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.31 8.45 59.85 0.51 2.81 16 2 N -0.44 -10.92 3.01 -122.20 -0.37 -11.29 16 3 C -0.31 -8.43 9.24 -14.94 -0.14 -8.56 16 4 H 0.10 2.83 7.45 -52.48 -0.39 2.44 16 5 C 0.03 0.82 5.04 -17.47 -0.09 0.74 16 6 N -0.88 -23.00 10.83 55.50 0.60 -22.39 16 7 Si 0.93 20.32 29.57 -169.99 -5.03 15.29 16 8 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 C 0.43 10.22 7.70 -10.99 -0.08 10.14 16 12 O -0.59 -15.37 15.38 5.54 0.09 -15.29 16 13 C 0.11 2.06 4.76 -5.20 -0.02 2.04 16 14 N -0.70 -11.79 5.52 -62.89 -0.35 -12.13 16 15 C 0.54 8.49 7.74 -12.96 -0.10 8.39 16 16 O -0.55 -10.24 16.23 5.20 0.08 -10.16 16 17 C -0.19 -2.17 9.42 -37.51 -0.35 -2.52 16 18 C -0.03 -0.36 9.48 -37.16 -0.35 -0.71 16 19 C -0.12 -1.10 5.88 -104.91 -0.62 -1.72 16 20 C -0.06 -0.43 9.95 -38.81 -0.39 -0.82 16 21 C -0.17 -1.15 10.09 -39.51 -0.40 -1.55 16 22 C 0.10 0.79 11.17 -17.45 -0.19 0.60 16 23 N -0.48 -5.04 10.34 -12.83 -0.13 -5.18 16 24 C 0.11 1.13 10.59 -17.04 -0.18 0.95 16 25 H 0.06 1.26 7.83 -51.93 -0.41 0.85 16 26 H 0.08 1.80 6.80 -51.93 -0.35 1.44 16 27 H 0.03 0.55 6.61 -51.93 -0.34 0.20 16 28 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.08 1.50 7.41 -51.93 -0.38 1.12 16 30 H 0.09 1.62 8.11 -51.93 -0.42 1.20 16 31 H 0.41 6.72 7.42 -40.82 -0.30 6.41 16 32 H 0.13 1.21 6.10 -52.48 -0.32 0.89 16 33 H 0.14 1.46 7.52 -52.49 -0.39 1.07 16 34 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 36 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.16 1.35 6.19 -52.48 -0.32 1.03 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -32.75 325.64 -6.66 -39.41 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.04 Total: 7.05 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -2.41 Total: 9.79 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.25 Total: -50.99 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: 0.17 Total: -25.45 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.29 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.75 -6.66 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491400797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.464 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds