Wall clock time and date at job start Tue Mar 31 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00273 * 2 1 4 4 O 1.21555 * 119.99896 * 0.26676 * 3 2 1 5 5 C 1.47860 * 120.00347 * 179.97438 * 3 2 1 6 6 C 1.39702 * 120.47289 * 359.97438 * 5 3 2 7 7 N 1.31750 * 120.94930 * 179.97438 * 6 5 3 8 8 C 1.31712 * 122.07456 * 0.02562 * 7 6 5 9 9 C 1.39931 * 120.83510 * 0.02562 * 8 7 6 10 10 C 1.47179 * 120.51807 * 179.97438 * 9 8 7 11 11 C 1.34959 * 119.99798 * 223.83598 * 10 9 8 12 12 C 1.46234 * 120.00479 * 9.67504 * 11 10 9 13 13 O 1.21758 * 119.99435 * 6.53658 * 12 11 10 14 14 N 1.34775 * 120.00077 * 186.53411 * 12 11 10 15 15 C 1.46497 * 119.99826 * 359.97438 * 14 12 11 16 16 C 1.36716 * 119.99551 * 180.02562 * 14 12 11 17 17 H 1.08000 * 120.00132 * 28.01673 * 16 14 12 18 18 C 1.39129 * 119.99813 * 208.01371 * 16 14 12 19 19 N 1.31324 * 119.99806 * 8.45705 * 18 16 14 20 20 Si 1.86795 * 120.00096 * 188.45963 * 18 16 14 21 21 H 1.48505 * 109.47223 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47298 * 119.99655 * 20 18 16 23 23 H 1.48497 * 109.47144 * 239.99930 * 20 18 16 24 24 C 1.39657 * 120.47950 * 179.71634 * 5 3 2 25 25 H 1.09004 * 109.46961 * 300.00561 * 1 2 3 26 26 H 1.09006 * 109.46994 * 60.00291 * 1 2 3 27 27 H 1.08995 * 109.47218 * 180.02562 * 1 2 3 28 28 H 0.96997 * 119.99894 * 179.97438 * 2 1 3 29 29 H 1.08003 * 119.52957 * 359.97417 * 6 5 3 30 30 H 1.08007 * 119.57893 * 179.97438 * 8 7 6 31 31 H 1.07993 * 119.99852 * 43.83983 * 10 9 8 32 32 H 1.08002 * 120.00018 * 189.67829 * 11 10 9 33 33 H 1.08999 * 109.47010 * 84.28579 * 15 14 12 34 34 H 1.09010 * 109.46743 * 204.28036 * 15 14 12 35 35 H 1.08993 * 109.47527 * 324.28098 * 15 14 12 36 36 H 0.96996 * 119.99974 * 179.97438 * 19 18 16 37 37 H 1.08004 * 120.93423 * 0.02562 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 0.0049 5 6 3.6175 1.1672 0.0006 6 6 4.3260 -0.0369 0.0017 7 7 5.6434 -0.0478 0.0017 8 6 6.3521 1.0624 0.0012 9 6 5.7252 2.3135 0.0011 10 6 6.5240 3.5497 0.0012 11 6 6.1820 4.5740 0.8106 12 6 5.1556 4.3853 1.8350 13 8 4.6948 3.2767 2.0380 14 7 4.7199 5.4383 2.5545 15 6 5.2749 6.7720 2.3106 16 6 3.7607 5.2617 3.5125 17 1 3.6684 4.3103 4.0153 18 6 2.9035 6.3075 3.8398 19 7 2.9026 7.4056 3.1196 20 14 1.7541 6.1498 5.3037 21 1 1.9485 4.8247 5.9453 22 1 2.0528 7.2231 6.2856 23 1 0.3476 6.2765 4.8446 24 6 4.3259 2.3708 -0.0054 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.9499 -0.8400 0.0004 29 1 3.7860 -0.9722 0.0025 30 1 7.4307 1.0065 0.0016 31 1 7.3836 3.6371 -0.6466 32 1 6.6663 5.5332 0.7019 33 1 4.7458 7.2394 1.4802 34 1 5.1586 7.3832 3.2057 35 1 6.3333 6.6857 2.0647 36 1 2.3048 8.1346 3.3475 37 1 3.8091 3.3191 -0.0101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491724450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:04 Heat of formation + Delta-G solvation = 8.458718 kcal Electronic energy + Delta-G solvation = -22813.286594 eV Core-core repulsion = 19364.268566 eV Total energy + Delta-G solvation = -3449.018028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21470 -38.86057 -38.22165 -35.15254 -34.46014 -33.37593 -31.93353 -31.68681 -29.67739 -26.95016 -26.48330 -25.01850 -23.67644 -23.35115 -21.45267 -20.31030 -18.43953 -17.48875 -16.93910 -16.60881 -16.41375 -16.01468 -15.04913 -14.97943 -14.82157 -14.28703 -13.95930 -13.73831 -13.57509 -13.09330 -12.88960 -12.64912 -12.55150 -12.35431 -12.14459 -11.72618 -11.57440 -11.38789 -11.29304 -10.94231 -10.45517 -10.38237 -10.03593 -9.81770 -9.23604 -9.08312 -9.04874 -8.87963 -8.49842 -7.72794 -7.64660 -6.46151 -3.96395 0.94748 1.45528 2.32637 3.13077 3.21060 3.23891 3.27666 3.36877 4.06286 4.31727 4.33571 4.58819 4.86196 5.02445 5.09004 5.13234 5.19963 5.29401 5.43901 5.55163 5.56824 5.71962 5.82489 5.89936 6.00831 6.29384 6.43194 6.48020 6.56142 6.68356 6.78249 6.90429 7.05230 7.11212 7.43856 7.60949 8.07856 8.23189 8.39640 8.46560 9.09837 9.29403 9.92623 10.57263 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.006136 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.781659 B = 4561.942559 C = 6123.301030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.738 5.738 3 C 0.566 3.434 4 O -0.525 6.525 5 C -0.206 4.206 6 C 0.126 3.874 7 N -0.503 5.503 8 C 0.117 3.883 9 C -0.097 4.097 10 C -0.094 4.094 11 C -0.156 4.156 12 C 0.447 3.553 13 O -0.582 6.582 14 N -0.420 5.420 15 C 0.104 3.896 16 C -0.296 4.296 17 H 0.100 0.900 18 C 0.033 3.967 19 N -0.869 5.869 20 Si 0.929 3.071 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.278 1.278 24 C 0.082 3.918 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.398 0.602 29 H 0.146 0.854 30 H 0.153 0.847 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.271 0.729 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 -9.036 -7.156 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.392 5.392 3 C 0.353 3.647 4 O -0.400 6.400 5 C -0.212 4.212 6 C -0.034 4.034 7 N -0.212 5.212 8 C -0.037 4.037 9 C -0.099 4.099 10 C -0.116 4.116 11 C -0.177 4.177 12 C 0.239 3.761 13 O -0.470 6.470 14 N -0.134 5.134 15 C -0.039 4.039 16 C -0.425 4.425 17 H 0.118 0.882 18 C -0.172 4.172 19 N -0.507 5.507 20 Si 0.755 3.245 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.204 1.204 24 C 0.055 3.945 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.233 0.767 29 H 0.163 0.837 30 H 0.170 0.830 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.081 0.919 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.576 -9.304 -6.974 11.910 hybrid contribution -0.811 0.756 0.855 1.400 sum 1.764 -8.548 -6.119 10.660 Atomic orbital electron populations 1.21498 0.79568 1.01831 1.02476 1.45660 1.07612 1.08483 1.77407 1.18188 0.87093 0.83608 0.75802 1.90818 1.69757 1.31041 1.48431 1.20591 0.93458 0.95582 1.11551 1.22628 0.90349 0.95997 0.94434 1.67455 1.07494 1.31229 1.14986 1.22881 0.99671 0.86885 0.94291 1.19753 0.93489 0.94648 1.01993 1.21826 0.98321 0.91726 0.99684 1.23423 0.98967 0.98494 0.96836 1.18044 0.87230 0.85967 0.84872 1.90646 1.62336 1.23978 1.70013 1.43626 1.32905 1.06457 1.30416 1.21616 0.93774 0.85434 1.03116 1.19741 1.09158 1.00336 1.13234 0.88228 1.25494 0.97359 0.95535 0.98839 1.69924 1.37479 1.05946 1.37351 0.85809 0.79682 0.78660 0.80332 1.19052 1.20472 1.20403 1.21715 0.92523 0.97766 0.82487 0.92136 0.92320 0.90852 0.76727 0.83675 0.82974 0.85285 0.85751 0.92656 0.90531 0.95106 0.91873 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 10.70 59.85 0.64 1.66 16 2 N -0.74 -9.80 5.67 -68.04 -0.39 -10.19 16 3 C 0.57 10.51 7.78 -12.32 -0.10 10.41 16 4 O -0.52 -12.15 16.41 5.32 0.09 -12.06 16 5 C -0.21 -3.80 5.88 -104.88 -0.62 -4.42 16 6 C 0.13 1.96 10.71 -17.04 -0.18 1.78 16 7 N -0.50 -8.24 10.33 -12.49 -0.13 -8.37 16 8 C 0.12 1.89 10.95 -16.97 -0.19 1.70 16 9 C -0.10 -1.74 4.57 -104.95 -0.48 -2.22 16 10 C -0.09 -1.51 9.84 -37.12 -0.37 -1.87 16 11 C -0.16 -2.89 9.17 -37.54 -0.34 -3.24 16 12 C 0.45 10.84 6.66 -13.05 -0.09 10.76 16 13 O -0.58 -15.62 11.74 5.14 0.06 -15.56 16 14 N -0.42 -10.74 2.99 -123.86 -0.37 -11.11 16 15 C 0.10 2.28 8.31 59.85 0.50 2.78 16 16 C -0.30 -8.28 9.16 -15.04 -0.14 -8.42 16 17 H 0.10 2.94 7.50 -52.49 -0.39 2.55 16 18 C 0.03 0.87 5.11 -17.44 -0.09 0.78 16 19 N -0.87 -23.12 10.84 55.51 0.60 -22.52 16 20 Si 0.93 21.01 29.56 -169.99 -5.03 15.98 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 C 0.08 1.67 6.21 -38.37 -0.24 1.43 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.40 3.90 6.88 -40.82 -0.28 3.61 16 29 H 0.15 1.64 6.40 -52.48 -0.34 1.31 16 30 H 0.15 1.94 8.06 -52.48 -0.42 1.51 16 31 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.12 1.95 6.27 -52.49 -0.33 1.62 16 33 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 34 H 0.08 1.76 6.83 -51.92 -0.35 1.41 16 35 H 0.03 0.55 6.35 -51.93 -0.33 0.22 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.14 3.29 6.73 -52.48 -0.35 2.93 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -34.79 317.58 -6.09 -40.88 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -4.03 Total: 7.02 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -1.68 Total: 11.14 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.28 Total: -52.18 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: 0.15 Total: -27.63 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.79 -6.09 -40.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491724450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.341 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds