Wall clock time and date at job start Tue Mar 31 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00273 * 2 1 4 4 O 1.21555 * 119.99896 * 0.26676 * 3 2 1 5 5 C 1.47860 * 120.00347 * 179.97438 * 3 2 1 6 6 C 1.39702 * 120.47289 * 359.97438 * 5 3 2 7 7 N 1.31750 * 120.94930 * 179.97438 * 6 5 3 8 8 C 1.31712 * 122.07456 * 0.02562 * 7 6 5 9 9 C 1.39931 * 120.83510 * 0.02562 * 8 7 6 10 10 C 1.47179 * 120.51807 * 179.97438 * 9 8 7 11 11 C 1.34959 * 119.99798 * 223.83598 * 10 9 8 12 12 C 1.46234 * 120.00479 * 9.67504 * 11 10 9 13 13 O 1.21758 * 119.99435 * 6.53658 * 12 11 10 14 14 N 1.34775 * 120.00077 * 186.53411 * 12 11 10 15 15 C 1.46497 * 119.99826 * 359.97438 * 14 12 11 16 16 C 1.36716 * 119.99551 * 180.02562 * 14 12 11 17 17 H 1.08000 * 120.00132 * 28.01673 * 16 14 12 18 18 C 1.39129 * 119.99813 * 208.01371 * 16 14 12 19 19 N 1.31324 * 119.99806 * 8.45705 * 18 16 14 20 20 Si 1.86795 * 120.00096 * 188.45963 * 18 16 14 21 21 H 1.48505 * 109.47223 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47298 * 119.99655 * 20 18 16 23 23 H 1.48497 * 109.47144 * 239.99930 * 20 18 16 24 24 C 1.39657 * 120.47950 * 179.71634 * 5 3 2 25 25 H 1.09004 * 109.46961 * 300.00561 * 1 2 3 26 26 H 1.09006 * 109.46994 * 60.00291 * 1 2 3 27 27 H 1.08995 * 109.47218 * 180.02562 * 1 2 3 28 28 H 0.96997 * 119.99894 * 179.97438 * 2 1 3 29 29 H 1.08003 * 119.52957 * 359.97417 * 6 5 3 30 30 H 1.08007 * 119.57893 * 179.97438 * 8 7 6 31 31 H 1.07993 * 119.99852 * 43.83983 * 10 9 8 32 32 H 1.08002 * 120.00018 * 189.67829 * 11 10 9 33 33 H 1.08999 * 109.47010 * 84.28579 * 15 14 12 34 34 H 1.09010 * 109.46743 * 204.28036 * 15 14 12 35 35 H 1.08993 * 109.47527 * 324.28098 * 15 14 12 36 36 H 0.96996 * 119.99974 * 179.97438 * 19 18 16 37 37 H 1.08004 * 120.93423 * 0.02562 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5312 2.2199 0.0049 5 6 3.6175 1.1672 0.0006 6 6 4.3260 -0.0369 0.0017 7 7 5.6434 -0.0478 0.0017 8 6 6.3521 1.0624 0.0012 9 6 5.7252 2.3135 0.0011 10 6 6.5240 3.5497 0.0012 11 6 6.1820 4.5740 0.8106 12 6 5.1556 4.3853 1.8350 13 8 4.6948 3.2767 2.0380 14 7 4.7199 5.4383 2.5545 15 6 5.2749 6.7720 2.3106 16 6 3.7607 5.2617 3.5125 17 1 3.6684 4.3103 4.0153 18 6 2.9035 6.3075 3.8398 19 7 2.9026 7.4056 3.1196 20 14 1.7541 6.1498 5.3037 21 1 1.9485 4.8247 5.9453 22 1 2.0528 7.2231 6.2856 23 1 0.3476 6.2765 4.8446 24 6 4.3259 2.3708 -0.0054 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.9499 -0.8400 0.0004 29 1 3.7860 -0.9722 0.0025 30 1 7.4307 1.0065 0.0016 31 1 7.3836 3.6371 -0.6466 32 1 6.6663 5.5332 0.7019 33 1 4.7458 7.2394 1.4802 34 1 5.1586 7.3832 3.2057 35 1 6.3333 6.6857 2.0647 36 1 2.3048 8.1346 3.3475 37 1 3.8091 3.3191 -0.0101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491724450.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:04 Heat of formation + Delta-G solvation = -18.213223 kcal Electronic energy + Delta-G solvation = -22814.443176 eV Core-core repulsion = 19364.268566 eV Total energy + Delta-G solvation = -3450.174610 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62875 -40.50039 -39.78012 -36.94671 -35.82234 -34.91437 -33.78503 -33.16864 -31.11556 -28.39388 -28.04203 -26.77495 -25.18609 -24.69901 -23.01315 -21.73113 -19.95887 -19.12024 -18.77146 -18.10667 -17.80756 -17.44419 -16.70510 -16.36863 -16.33870 -16.04492 -15.74388 -15.23697 -14.94615 -14.55113 -14.32315 -14.17343 -13.89044 -13.78810 -13.43476 -13.34735 -13.15341 -13.07870 -12.93380 -12.73883 -12.40990 -12.19175 -11.50952 -11.30041 -11.08435 -10.65749 -10.42192 -10.25661 -10.07380 -9.62330 -9.22273 -8.42563 -6.04753 -0.39718 -0.02062 0.93284 1.31562 1.34244 1.46360 1.81768 2.15653 2.21140 2.51889 2.94944 3.11728 3.16465 3.38803 3.70910 3.90028 3.94685 4.00661 4.11146 4.27481 4.39552 4.56903 4.58778 4.62406 4.77473 4.89806 4.96041 5.04825 5.09135 5.28561 5.32510 5.33822 5.36048 5.56795 5.68754 6.08464 6.44003 6.46102 6.90317 7.12310 7.14456 7.42170 8.03365 8.59975 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.013415 B = 0.006136 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.781659 B = 4561.942559 C = 6123.301030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.714 5.714 3 C 0.557 3.443 4 O -0.587 6.587 5 C -0.226 4.226 6 C 0.143 3.857 7 N -0.506 5.506 8 C 0.132 3.868 9 C -0.124 4.124 10 C -0.046 4.046 11 C -0.190 4.190 12 C 0.446 3.554 13 O -0.617 6.617 14 N -0.449 5.449 15 C 0.117 3.883 16 C -0.334 4.334 17 H 0.066 0.934 18 C -0.003 4.003 19 N -0.892 5.892 20 Si 0.986 3.014 21 H -0.275 1.275 22 H -0.257 1.257 23 H -0.279 1.279 24 C 0.056 3.944 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.125 0.875 28 H 0.419 0.581 29 H 0.191 0.809 30 H 0.196 0.804 31 H 0.190 0.810 32 H 0.158 0.842 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.275 0.725 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -11.397 -8.332 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.367 5.367 3 C 0.345 3.655 4 O -0.468 6.468 5 C -0.232 4.232 6 C -0.017 4.017 7 N -0.214 5.214 8 C -0.022 4.022 9 C -0.126 4.126 10 C -0.067 4.067 11 C -0.211 4.211 12 C 0.239 3.761 13 O -0.506 6.506 14 N -0.165 5.165 15 C -0.026 4.026 16 C -0.463 4.463 17 H 0.084 0.916 18 C -0.205 4.205 19 N -0.530 5.530 20 Si 0.809 3.191 21 H -0.199 1.199 22 H -0.181 1.181 23 H -0.205 1.205 24 C 0.030 3.970 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.143 0.857 28 H 0.257 0.743 29 H 0.208 0.792 30 H 0.213 0.787 31 H 0.207 0.793 32 H 0.176 0.824 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.581 -11.724 -8.171 15.007 hybrid contribution -1.366 1.165 1.017 2.063 sum 3.215 -10.559 -7.154 13.154 Atomic orbital electron populations 1.21736 0.78034 1.04817 1.01289 1.45527 1.08627 1.07714 1.74831 1.18456 0.87493 0.84164 0.75378 1.90785 1.70811 1.33485 1.51738 1.20776 0.93639 0.96251 1.12513 1.23237 0.90347 0.96384 0.91686 1.67629 1.07577 1.31189 1.15019 1.23532 1.01568 0.85672 0.91464 1.20088 0.92603 0.96730 1.03143 1.22514 0.97662 0.89302 0.97220 1.23351 0.99274 1.01267 0.97208 1.19098 0.87057 0.85041 0.84917 1.90615 1.63430 1.25403 1.71174 1.43809 1.33614 1.07954 1.31164 1.21515 0.95855 0.83603 1.01591 1.19525 1.11684 0.99719 1.15387 0.91620 1.26166 0.98191 0.95148 1.01044 1.69988 1.38238 1.06310 1.38421 0.84992 0.77588 0.78636 0.77846 1.19950 1.18150 1.20454 1.21539 0.94142 0.96779 0.84590 0.94143 0.92826 0.85652 0.74323 0.79202 0.78720 0.79275 0.82449 0.94071 0.92394 0.90735 0.91533 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.81 10.70 127.77 1.37 3.17 16 2 N -0.71 -18.08 5.67 -487.46 -2.76 -20.84 16 3 C 0.56 21.29 7.78 86.79 0.68 21.96 16 4 O -0.59 -29.17 16.41 -3.89 -0.06 -29.23 16 5 C -0.23 -8.37 5.88 -20.03 -0.12 -8.49 16 6 C 0.14 4.06 10.71 85.06 0.91 4.98 16 7 N -0.51 -14.71 10.33 -193.44 -2.00 -16.70 16 8 C 0.13 3.74 10.95 85.12 0.93 4.67 16 9 C -0.12 -4.22 4.57 -20.08 -0.09 -4.31 16 10 C -0.05 -1.33 9.84 23.87 0.23 -1.10 16 11 C -0.19 -6.80 9.17 23.59 0.22 -6.59 16 12 C 0.45 22.37 6.66 86.32 0.58 22.95 16 13 O -0.62 -34.73 11.74 -4.53 -0.05 -34.79 16 14 N -0.45 -24.12 2.99 -663.97 -1.99 -26.11 16 15 C 0.12 5.27 8.31 127.77 1.06 6.33 16 16 C -0.33 -19.94 9.16 84.15 0.77 -19.17 16 17 H 0.07 4.22 7.50 -2.91 -0.02 4.20 16 18 C 0.00 -0.17 5.11 84.98 0.43 0.26 16 19 N -0.89 -49.44 10.84 21.69 0.24 -49.21 16 20 Si 0.99 44.98 29.56 68.60 2.03 47.01 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 C 0.06 2.37 6.21 23.05 0.14 2.52 16 25 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.42 6.89 6.88 -92.71 -0.64 6.25 16 29 H 0.19 3.47 6.40 -2.91 -0.02 3.46 16 30 H 0.20 3.78 8.06 -2.91 -0.02 3.75 16 31 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.16 4.49 6.27 -2.91 -0.02 4.48 16 33 H 0.04 1.91 7.85 -2.39 -0.02 1.89 16 34 H 0.06 2.77 6.83 -2.38 -0.02 2.75 16 35 H 0.07 2.59 6.35 -2.39 -0.02 2.58 16 36 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 37 H 0.09 4.71 6.73 -2.91 -0.02 4.69 16 Total: -1.00 -85.39 317.58 2.99 -82.40 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.48 Total: 20.30 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 7.11 Total: 27.18 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -6.51 Total: -112.86 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: -0.12 Total: -64.02 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -85.39 2.99 -82.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491724450.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.185 kcal (2) G-P(sol) polarization free energy of solvation -85.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds