Wall clock time and date at job start Tue Mar 31 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99695 * 2 1 4 4 O 1.21545 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.47863 * 119.99789 * 179.97438 * 3 2 1 6 6 C 1.39704 * 120.47537 * 0.02562 * 5 3 2 7 7 N 1.31746 * 120.95024 * 180.02562 * 6 5 3 8 8 C 1.31720 * 122.07271 * 359.97370 * 7 6 5 9 9 C 1.39929 * 120.83828 * 0.02562 * 8 7 6 10 10 C 1.47165 * 120.52259 * 179.97438 * 9 8 7 11 11 C 1.34968 * 120.00119 * 359.97438 * 10 9 8 12 12 C 1.46225 * 120.00226 * 179.97438 * 11 10 9 13 13 O 1.21759 * 120.00056 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99834 * 179.73310 * 12 11 10 15 15 C 1.46493 * 120.00227 * 0.26711 * 14 12 11 16 16 C 1.36719 * 119.99790 * 180.27753 * 14 12 11 17 17 H 1.07999 * 120.00076 * 23.43319 * 16 14 12 18 18 C 1.39120 * 119.99645 * 203.43991 * 16 14 12 19 19 N 1.31321 * 120.00345 * 15.00455 * 18 16 14 20 20 Si 1.86803 * 119.99858 * 195.00636 * 18 16 14 21 21 H 1.48502 * 109.47104 * 85.23641 * 20 18 16 22 22 H 1.48502 * 109.47181 * 205.23472 * 20 18 16 23 23 H 1.48498 * 109.47015 * 325.23623 * 20 18 16 24 24 C 1.39655 * 120.47425 * 180.25926 * 5 3 2 25 25 H 1.09003 * 109.47228 * 59.99895 * 1 2 3 26 26 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47257 * 299.99531 * 1 2 3 28 28 H 0.96996 * 120.00161 * 180.02562 * 2 1 3 29 29 H 1.08005 * 119.52599 * 359.97438 * 6 5 3 30 30 H 1.08001 * 119.57635 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.00235 * 180.02562 * 10 9 8 32 32 H 1.08007 * 119.99676 * 0.02562 * 11 10 9 33 33 H 1.09003 * 109.47285 * 86.23415 * 15 14 12 34 34 H 1.09001 * 109.47816 * 206.23628 * 15 14 12 35 35 H 1.09000 * 109.47450 * 326.23402 * 15 14 12 36 36 H 0.96996 * 120.00362 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.93727 * 0.02562 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3260 -0.0367 0.0006 7 7 5.6435 -0.0476 0.0016 8 6 6.3521 1.0627 0.0021 9 6 5.7252 2.3137 0.0022 10 6 6.5238 3.5499 0.0033 11 6 7.8718 3.4825 0.0049 12 6 8.6652 4.7108 0.0055 13 8 8.1099 5.7943 0.0050 14 7 10.0113 4.6434 0.0125 15 6 10.6795 3.3397 0.0136 16 6 10.7532 5.7918 0.0188 17 1 10.3234 6.7103 0.3903 18 6 12.0616 5.7772 -0.4536 19 7 12.4905 4.7623 -1.1682 20 14 13.2086 7.2012 -0.0713 21 1 13.8411 6.9851 1.2549 22 1 14.2621 7.2822 -1.1148 23 1 12.4345 8.4683 -0.0500 24 6 4.3257 2.3709 0.0060 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.7861 -0.9721 0.0006 30 1 7.4306 1.0068 0.0025 31 1 6.0312 4.5110 0.0038 32 1 8.3644 2.5213 0.0049 33 1 10.7906 2.9875 -1.0120 34 1 11.6632 3.4359 0.4733 35 1 10.0820 2.6256 0.5803 36 1 13.4027 4.7523 -1.4979 37 1 3.8089 3.3193 0.0103 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491724452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:06 Heat of formation + Delta-G solvation = -5.019745 kcal Electronic energy + Delta-G solvation = -21327.766452 eV Core-core repulsion = 17878.163954 eV Total energy + Delta-G solvation = -3449.602498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.74733 -39.22210 -38.45853 -35.14780 -34.92841 -34.03144 -32.56815 -31.79838 -29.92577 -27.34658 -26.55828 -25.28587 -24.34372 -23.39962 -21.94837 -20.50964 -18.64280 -18.09325 -17.08374 -17.04526 -16.59515 -16.22732 -15.58972 -15.46726 -14.86096 -14.48859 -14.15038 -14.08849 -13.90537 -13.63043 -13.24699 -13.12150 -12.95510 -12.66599 -12.22514 -11.95284 -11.70390 -11.42833 -11.31690 -10.90509 -10.66456 -10.53022 -10.43808 -10.38843 -9.80878 -9.57405 -9.48641 -9.15885 -8.50525 -8.22967 -7.80296 -6.51869 -3.95813 0.32396 0.80022 2.16176 2.72539 2.79959 3.12599 3.17854 3.23033 3.75991 3.99975 4.05348 4.33144 4.45168 4.58299 4.61087 4.78927 4.80294 4.99626 5.07030 5.10930 5.13793 5.37241 5.42914 5.59724 5.77212 5.85158 5.97364 6.06025 6.23165 6.41451 6.69658 6.75926 6.81591 7.05692 7.06048 7.40095 7.68760 7.85039 8.01397 8.35537 9.05914 9.26335 9.89998 10.51713 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.044889 B = 0.002690 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.607443 B =10405.757211 C =10950.710879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.733 5.733 3 C 0.566 3.434 4 O -0.531 6.531 5 C -0.189 4.189 6 C 0.119 3.881 7 N -0.481 5.481 8 C 0.123 3.877 9 C -0.090 4.090 10 C -0.098 4.098 11 C -0.137 4.137 12 C 0.453 3.547 13 O -0.596 6.596 14 N -0.425 5.425 15 C 0.104 3.896 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.030 3.970 19 N -0.866 5.866 20 Si 0.930 3.070 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.267 1.267 24 C -0.011 4.011 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.402 0.598 29 H 0.154 0.846 30 H 0.166 0.834 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.272 0.728 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.692 -14.480 2.178 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.385 5.385 3 C 0.352 3.648 4 O -0.408 6.408 5 C -0.194 4.194 6 C -0.040 4.040 7 N -0.188 5.188 8 C -0.034 4.034 9 C -0.092 4.092 10 C -0.120 4.120 11 C -0.159 4.159 12 C 0.244 3.756 13 O -0.484 6.484 14 N -0.140 5.140 15 C -0.040 4.040 16 C -0.427 4.427 17 H 0.121 0.879 18 C -0.175 4.175 19 N -0.504 5.504 20 Si 0.756 3.244 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.191 1.191 24 C -0.037 4.037 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.237 0.763 29 H 0.171 0.829 30 H 0.183 0.817 31 H 0.154 0.846 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.715 -14.048 2.077 20.449 hybrid contribution 0.547 0.737 0.001 0.918 sum -14.168 -13.310 2.078 19.550 Atomic orbital electron populations 1.21571 0.78984 1.02413 1.02628 1.45688 1.08019 1.08497 1.76313 1.18129 0.86822 0.83820 0.75999 1.90797 1.69765 1.31116 1.49107 1.20795 0.93773 0.95654 1.09221 1.22863 0.90388 0.96354 0.94430 1.67603 1.07443 1.31292 1.12485 1.23372 1.00824 0.86735 0.92481 1.20134 0.93428 0.95242 1.00436 1.21880 0.93566 0.95599 1.00939 1.23392 0.94630 0.98922 0.98915 1.17873 0.82601 0.88758 0.86329 1.90653 1.70683 1.29723 1.57307 1.43603 1.04104 1.06745 1.59585 1.21611 0.97499 0.83743 1.01131 1.19782 0.94091 0.89992 1.38811 0.87850 1.25475 0.98488 0.98654 0.94919 1.69960 1.18128 1.31356 1.30918 0.85868 0.79287 0.81031 0.78190 1.20039 1.20763 1.19126 1.21940 0.92703 0.98434 0.90655 0.91981 0.90424 0.91978 0.76327 0.82869 0.81660 0.84569 0.86330 0.92496 0.90603 0.94975 0.91746 0.83167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 10.70 59.85 0.64 1.16 16 2 N -0.73 -5.46 5.67 -68.04 -0.39 -5.84 16 3 C 0.57 6.53 7.78 -12.32 -0.10 6.44 16 4 O -0.53 -8.12 16.41 5.33 0.09 -8.03 16 5 C -0.19 -2.20 5.88 -104.88 -0.62 -2.82 16 6 C 0.12 1.21 10.71 -17.04 -0.18 1.02 16 7 N -0.48 -5.93 10.33 -12.49 -0.13 -6.06 16 8 C 0.12 1.60 10.58 -16.97 -0.18 1.42 16 9 C -0.09 -1.27 5.88 -104.96 -0.62 -1.89 16 10 C -0.10 -1.64 9.48 -37.12 -0.35 -1.99 16 11 C -0.14 -2.55 8.61 -37.54 -0.32 -2.88 16 12 C 0.45 11.10 7.55 -13.05 -0.10 11.00 16 13 O -0.60 -16.75 15.93 5.14 0.08 -16.67 16 14 N -0.42 -10.74 3.00 -123.87 -0.37 -11.11 16 15 C 0.10 2.21 8.33 59.84 0.50 2.71 16 16 C -0.30 -8.15 9.24 -15.05 -0.14 -8.29 16 17 H 0.10 2.96 7.44 -52.49 -0.39 2.57 16 18 C 0.03 0.77 4.99 -17.44 -0.09 0.68 16 19 N -0.87 -22.26 10.90 55.50 0.61 -21.65 16 20 Si 0.93 20.03 29.58 -169.99 -5.03 15.00 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 C -0.01 -0.15 9.48 -38.37 -0.36 -0.51 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.40 1.77 6.88 -40.82 -0.28 1.49 16 29 H 0.15 0.93 6.40 -52.48 -0.34 0.60 16 30 H 0.17 1.92 6.17 -52.49 -0.32 1.59 16 31 H 0.14 2.45 7.52 -52.49 -0.39 2.05 16 32 H 0.12 1.84 4.32 -52.48 -0.23 1.61 16 33 H 0.06 1.23 7.82 -51.93 -0.41 0.83 16 34 H 0.08 1.69 6.82 -51.93 -0.35 1.34 16 35 H 0.03 0.55 6.31 -51.93 -0.33 0.22 16 36 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 37 H 0.15 1.99 7.73 -52.49 -0.41 1.58 16 LS Contribution 322.50 15.07 4.86 4.86 Total: -1.00 -33.84 322.50 -6.05 -39.88 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.85 Total: 3.56 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.92 Total: 6.06 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.28 Total: -44.67 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: 0.17 Total: -24.70 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.84 -6.05 -39.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491724452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.863 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds