Wall clock time and date at job start Tue Mar 31 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34783 * 119.99695 * 2 1 4 4 O 1.21545 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.47863 * 119.99789 * 179.97438 * 3 2 1 6 6 C 1.39704 * 120.47537 * 0.02562 * 5 3 2 7 7 N 1.31746 * 120.95024 * 180.02562 * 6 5 3 8 8 C 1.31720 * 122.07271 * 359.97370 * 7 6 5 9 9 C 1.39929 * 120.83828 * 0.02562 * 8 7 6 10 10 C 1.47165 * 120.52259 * 179.97438 * 9 8 7 11 11 C 1.34968 * 120.00119 * 359.97438 * 10 9 8 12 12 C 1.46225 * 120.00226 * 179.97438 * 11 10 9 13 13 O 1.21759 * 120.00056 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99834 * 179.73310 * 12 11 10 15 15 C 1.46493 * 120.00227 * 0.26711 * 14 12 11 16 16 C 1.36719 * 119.99790 * 180.27753 * 14 12 11 17 17 H 1.07999 * 120.00076 * 23.43319 * 16 14 12 18 18 C 1.39120 * 119.99645 * 203.43991 * 16 14 12 19 19 N 1.31321 * 120.00345 * 15.00455 * 18 16 14 20 20 Si 1.86803 * 119.99858 * 195.00636 * 18 16 14 21 21 H 1.48502 * 109.47104 * 85.23641 * 20 18 16 22 22 H 1.48502 * 109.47181 * 205.23472 * 20 18 16 23 23 H 1.48498 * 109.47015 * 325.23623 * 20 18 16 24 24 C 1.39655 * 120.47425 * 180.25926 * 5 3 2 25 25 H 1.09003 * 109.47228 * 59.99895 * 1 2 3 26 26 H 1.09002 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47257 * 299.99531 * 1 2 3 28 28 H 0.96996 * 120.00161 * 180.02562 * 2 1 3 29 29 H 1.08005 * 119.52599 * 359.97438 * 6 5 3 30 30 H 1.08001 * 119.57635 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.00235 * 180.02562 * 10 9 8 32 32 H 1.08007 * 119.99676 * 0.02562 * 11 10 9 33 33 H 1.09003 * 109.47285 * 86.23415 * 15 14 12 34 34 H 1.09001 * 109.47816 * 206.23628 * 15 14 12 35 35 H 1.09000 * 109.47450 * 326.23402 * 15 14 12 36 36 H 0.96996 * 120.00362 * 179.97438 * 19 18 16 37 37 H 1.08001 * 120.93727 * 0.02562 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6175 1.1673 0.0006 6 6 4.3260 -0.0367 0.0006 7 7 5.6435 -0.0476 0.0016 8 6 6.3521 1.0627 0.0021 9 6 5.7252 2.3137 0.0022 10 6 6.5238 3.5499 0.0033 11 6 7.8718 3.4825 0.0049 12 6 8.6652 4.7108 0.0055 13 8 8.1099 5.7943 0.0050 14 7 10.0113 4.6434 0.0125 15 6 10.6795 3.3397 0.0136 16 6 10.7532 5.7918 0.0188 17 1 10.3234 6.7103 0.3903 18 6 12.0616 5.7772 -0.4536 19 7 12.4905 4.7623 -1.1682 20 14 13.2086 7.2012 -0.0713 21 1 13.8411 6.9851 1.2549 22 1 14.2621 7.2822 -1.1148 23 1 12.4345 8.4683 -0.0500 24 6 4.3257 2.3709 0.0060 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.9500 -0.8400 -0.0004 29 1 3.7861 -0.9721 0.0006 30 1 7.4306 1.0068 0.0025 31 1 6.0312 4.5110 0.0038 32 1 8.3644 2.5213 0.0049 33 1 10.7906 2.9875 -1.0120 34 1 11.6632 3.4359 0.4733 35 1 10.0820 2.6256 0.5803 36 1 13.4027 4.7523 -1.4979 37 1 3.8089 3.3193 0.0103 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491724452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:06 Heat of formation + Delta-G solvation = -29.963674 kcal Electronic energy + Delta-G solvation = -21328.848102 eV Core-core repulsion = 17878.163954 eV Total energy + Delta-G solvation = -3450.684148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.71644 -40.45425 -40.02033 -36.83944 -35.92752 -35.35313 -33.77395 -33.50741 -31.18150 -28.37022 -28.02572 -26.89689 -25.56938 -24.51478 -23.17846 -21.59733 -20.04461 -19.20569 -18.93304 -18.10180 -18.00897 -17.38109 -16.75149 -16.41941 -16.36804 -15.92637 -15.79384 -15.47357 -14.97405 -14.75697 -14.60560 -14.21369 -13.88200 -13.81886 -13.52937 -13.28378 -13.21094 -13.07259 -12.90496 -12.60487 -12.30714 -12.14727 -11.86082 -11.52362 -11.05254 -10.83077 -10.59183 -10.45968 -10.20046 -9.76905 -9.47542 -8.42905 -6.00252 -0.71658 -0.28763 0.87940 1.40810 1.41907 1.52677 1.74988 2.07591 2.25111 2.45046 2.81199 2.99520 3.14406 3.21280 3.51917 3.67279 3.73861 3.75939 3.94616 4.16839 4.28616 4.44856 4.57751 4.64106 4.65700 4.84086 4.85926 4.98114 4.99948 5.27648 5.30590 5.34561 5.37398 5.39903 5.46669 6.06472 6.40346 6.44463 6.71728 7.08135 7.11158 7.38876 7.99534 8.59727 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.044889 B = 0.002690 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.607443 B =10405.757211 C =10950.710879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.712 5.712 3 C 0.563 3.437 4 O -0.578 6.578 5 C -0.195 4.195 6 C 0.146 3.854 7 N -0.491 5.491 8 C 0.136 3.864 9 C -0.114 4.114 10 C -0.057 4.057 11 C -0.163 4.163 12 C 0.446 3.554 13 O -0.647 6.647 14 N -0.444 5.444 15 C 0.112 3.888 16 C -0.346 4.346 17 H 0.072 0.928 18 C 0.000 4.000 19 N -0.884 5.884 20 Si 0.992 3.008 21 H -0.262 1.262 22 H -0.270 1.270 23 H -0.277 1.277 24 C -0.012 4.012 25 H 0.052 0.948 26 H 0.118 0.882 27 H 0.052 0.948 28 H 0.420 0.580 29 H 0.202 0.798 30 H 0.182 0.818 31 H 0.117 0.883 32 H 0.155 0.845 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.278 0.722 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.750 -18.115 2.350 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.364 5.364 3 C 0.349 3.651 4 O -0.458 6.458 5 C -0.200 4.200 6 C -0.012 4.012 7 N -0.198 5.198 8 C -0.021 4.021 9 C -0.116 4.116 10 C -0.079 4.079 11 C -0.184 4.184 12 C 0.239 3.761 13 O -0.538 6.538 14 N -0.160 5.160 15 C -0.030 4.030 16 C -0.474 4.474 17 H 0.090 0.910 18 C -0.203 4.203 19 N -0.521 5.521 20 Si 0.815 3.185 21 H -0.187 1.187 22 H -0.195 1.195 23 H -0.202 1.202 24 C -0.039 4.039 25 H 0.070 0.930 26 H 0.137 0.863 27 H 0.071 0.929 28 H 0.258 0.742 29 H 0.219 0.781 30 H 0.198 0.802 31 H 0.135 0.865 32 H 0.172 0.828 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.771 -17.782 2.249 23.874 hybrid contribution 0.490 1.662 -0.059 1.734 sum -15.281 -16.120 2.190 22.319 Atomic orbital electron populations 1.21771 0.77768 1.04835 1.01726 1.45601 1.08822 1.07971 1.74029 1.18172 0.86716 0.84319 0.75855 1.90787 1.70440 1.32979 1.51632 1.20883 0.94119 0.95549 1.09430 1.23607 0.89830 0.97488 0.90294 1.67774 1.08261 1.30528 1.13270 1.23614 1.01737 0.86229 0.90475 1.19869 0.93360 0.94497 1.03861 1.21936 0.93272 0.96320 0.96338 1.23094 0.94513 0.97670 1.03088 1.18796 0.82848 0.90025 0.84436 1.90597 1.71744 1.32293 1.59136 1.43794 1.04482 1.07443 1.60260 1.21604 0.97341 0.82883 1.01213 1.19643 0.95611 0.90266 1.41870 0.91010 1.26175 0.98940 1.01114 0.94096 1.70012 1.18649 1.32442 1.30975 0.84973 0.77273 0.77542 0.78722 1.18699 1.19498 1.20213 1.22003 0.92635 0.99244 0.89983 0.92956 0.86316 0.92909 0.74208 0.78136 0.80160 0.86517 0.82755 0.93228 0.92119 0.90633 0.91193 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.70 127.77 1.37 2.10 16 2 N -0.71 -8.01 5.67 -487.44 -2.76 -10.77 16 3 C 0.56 11.75 7.78 86.79 0.68 12.43 16 4 O -0.58 -17.36 16.41 -3.86 -0.06 -17.42 16 5 C -0.19 -3.99 5.88 -20.03 -0.12 -4.11 16 6 C 0.15 2.30 10.71 85.06 0.91 3.21 16 7 N -0.49 -10.03 10.33 -193.44 -2.00 -12.02 16 8 C 0.14 3.10 10.58 85.12 0.90 4.00 16 9 C -0.11 -3.02 5.88 -20.08 -0.12 -3.14 16 10 C -0.06 -1.90 9.48 23.86 0.23 -1.68 16 11 C -0.16 -6.04 8.61 23.59 0.20 -5.84 16 12 C 0.45 22.72 7.55 86.32 0.65 23.37 16 13 O -0.65 -38.51 15.93 -4.54 -0.07 -38.58 16 14 N -0.44 -23.26 3.00 -663.99 -1.99 -25.26 16 15 C 0.11 4.79 8.33 127.77 1.06 5.85 16 16 C -0.35 -19.84 9.24 84.14 0.78 -19.07 16 17 H 0.07 4.44 7.44 -2.91 -0.02 4.41 16 18 C 0.00 0.02 4.99 84.98 0.42 0.44 16 19 N -0.88 -46.01 10.90 21.69 0.24 -45.77 16 20 Si 0.99 41.96 29.58 68.60 2.03 43.99 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.01 -0.32 9.48 23.06 0.22 -0.10 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 26 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.42 1.51 6.88 -92.71 -0.64 0.88 16 29 H 0.20 1.14 6.40 -2.91 -0.02 1.12 16 30 H 0.18 3.51 6.17 -2.91 -0.02 3.49 16 31 H 0.12 4.37 7.52 -2.91 -0.02 4.35 16 32 H 0.16 4.46 4.32 -2.91 -0.01 4.45 16 33 H 0.05 2.15 7.82 -2.39 -0.02 2.13 16 34 H 0.06 2.73 6.82 -2.39 -0.02 2.72 16 35 H 0.08 2.48 6.31 -2.39 -0.02 2.46 16 36 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 37 H 0.14 3.81 7.73 -2.91 -0.02 3.79 16 Total: -1.00 -78.93 322.50 3.05 -75.88 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.49 Total: 12.48 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 7.18 Total: 17.48 kcal Atomic # 7 Polarization: -87.30 SS G_CDS: -6.52 Total: -93.82 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.14 Total: -56.01 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -78.93 3.05 -75.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491724452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.916 kcal (2) G-P(sol) polarization free energy of solvation -78.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds