Wall clock time and date at job start Tue Mar 31 2020 02:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38397 * 120.33473 * 2 1 4 4 N 1.31941 * 121.13467 * 180.26971 * 3 2 1 5 5 C 1.31658 * 121.90780 * 359.73846 * 4 3 2 6 6 C 1.39800 * 120.52566 * 0.02562 * 5 4 3 7 7 C 1.47209 * 120.58210 * 180.02562 * 6 5 4 8 8 C 1.34807 * 120.00051 * 359.97163 * 7 6 5 9 9 C 1.46422 * 119.99754 * 179.97438 * 8 7 6 10 10 O 1.21704 * 120.00431 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00016 * 180.02562 * 9 8 7 12 12 C 1.46503 * 119.99907 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46630 * 179.97438 * 12 11 9 14 14 O 1.21286 * 120.00391 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99533 * 179.97438 * 13 12 11 16 16 C 1.37093 * 119.99575 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00655 * 0.02562 * 16 15 13 18 18 C 1.38950 * 119.99781 * 179.97438 * 16 15 13 19 19 N 1.31407 * 120.00104 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47178 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47241 * 120.00523 * 20 18 16 23 23 H 1.48498 * 109.47305 * 240.00241 * 20 18 16 24 24 C 1.38288 * 120.33086 * 179.75479 * 2 1 3 25 25 H 1.08995 * 109.47012 * 270.24445 * 1 2 3 26 26 H 1.08997 * 109.46803 * 30.24268 * 1 2 3 27 27 H 1.09000 * 109.47354 * 150.24376 * 1 2 3 28 28 H 1.07995 * 119.42660 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.73745 * 179.97438 * 5 4 3 30 30 H 1.08003 * 119.99795 * 179.97438 * 7 6 5 31 31 H 1.07993 * 120.00133 * 0.02562 * 8 7 6 32 32 H 0.96994 * 120.00007 * 0.02562 * 11 9 8 33 33 H 1.08995 * 109.47147 * 299.99697 * 12 11 9 34 34 H 1.08996 * 109.47185 * 59.99801 * 12 11 9 35 35 H 0.96997 * 120.00267 * 0.02562 * 15 13 12 36 36 H 0.97004 * 120.00193 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.87079 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1945 0.0000 4 7 3.5253 1.2129 -0.0053 5 6 4.2367 0.1051 -0.0057 6 6 3.6071 -1.1431 -0.0010 7 6 4.4013 -2.3825 -0.0009 8 6 5.7480 -2.3202 -0.0060 9 6 6.5379 -3.5531 -0.0053 10 8 5.9788 -4.6341 -0.0007 11 7 7.8842 -3.4908 -0.0098 12 6 8.6746 -4.7243 -0.0097 13 6 10.1419 -4.3807 -0.0159 14 8 10.4929 -3.2197 -0.0205 15 7 11.0641 -5.3636 -0.0164 16 6 12.3989 -5.0510 -0.0225 17 1 12.7115 -4.0173 -0.0266 18 6 13.3498 -6.0642 -0.0225 19 7 12.9695 -7.3221 -0.0170 20 14 15.1685 -5.6384 -0.0301 21 1 15.3313 -4.1624 -0.0349 22 1 15.8143 -6.2033 1.1820 23 1 15.8059 -6.2111 -1.2429 24 6 2.2054 -1.1936 0.0051 25 1 -0.3633 0.0044 1.0276 26 1 -0.3633 0.8878 -0.5176 27 1 -0.3634 -0.8921 -0.5100 28 1 1.6621 2.1275 0.0004 29 1 5.3152 0.1611 -0.0106 30 1 3.9052 -3.3418 0.0031 31 1 6.2441 -1.3610 -0.0097 32 1 8.3299 -2.6293 -0.0132 33 1 8.4409 -5.3055 0.8823 34 1 8.4350 -5.3094 -0.8976 35 1 10.7835 -6.2921 -0.0131 36 1 13.6333 -8.0295 -0.0174 37 1 1.6851 -2.1400 0.0087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492885901.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:40 Heat of formation + Delta-G solvation = -55.184994 kcal Electronic energy + Delta-G solvation = -20628.053488 eV Core-core repulsion = 17176.275661 eV Total energy + Delta-G solvation = -3451.777826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.30769 -40.90574 -39.88354 -36.29407 -35.70972 -35.27228 -34.58403 -33.38924 -31.54884 -29.35563 -28.17860 -26.69683 -25.09147 -24.06098 -22.14098 -21.41221 -20.50689 -19.99125 -18.90989 -18.01338 -17.54976 -17.13447 -16.90690 -16.73037 -16.29874 -15.70435 -15.65008 -15.46529 -15.25346 -14.82684 -14.55522 -14.04123 -13.97519 -13.68471 -13.59355 -13.56237 -13.28659 -13.12070 -12.92249 -12.51479 -12.45387 -12.11598 -11.86231 -11.58903 -11.18627 -10.57752 -10.45745 -10.35964 -10.20516 -10.09373 -9.42286 -8.52078 -6.02263 -0.63522 0.23345 0.87965 1.34611 1.42716 1.56742 1.88882 2.03412 2.23444 2.31961 2.85782 3.11033 3.15110 3.37228 3.58478 3.76247 3.88931 3.98143 4.08200 4.10740 4.22733 4.35350 4.42124 4.44466 4.65407 4.78459 4.86096 4.94333 5.14544 5.21066 5.24786 5.32699 5.37026 5.38389 5.71121 5.90961 6.44883 6.52399 6.93862 7.02601 7.12634 7.43177 7.93278 8.65014 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.048259 B = 0.002180 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.062884 B =12838.095444 C =13397.709845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C 0.094 3.906 4 N -0.509 5.509 5 C 0.097 3.903 6 C -0.128 4.128 7 C -0.007 4.007 8 C -0.205 4.205 9 C 0.545 3.455 10 O -0.586 6.586 11 N -0.702 5.702 12 C 0.120 3.880 13 C 0.432 3.568 14 O -0.624 6.624 15 N -0.560 5.560 16 C -0.337 4.337 17 H 0.086 0.914 18 C -0.011 4.011 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.060 4.060 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.179 0.821 29 H 0.168 0.832 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.415 0.585 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.399 0.601 36 H 0.280 0.720 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.784 11.582 0.058 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C -0.062 4.062 4 N -0.216 5.216 5 C -0.060 4.060 6 C -0.130 4.130 7 C -0.028 4.028 8 C -0.226 4.226 9 C 0.335 3.665 10 O -0.469 6.469 11 N -0.355 5.355 12 C -0.007 4.007 13 C 0.219 3.781 14 O -0.512 6.512 15 N -0.195 5.195 16 C -0.466 4.466 17 H 0.104 0.896 18 C -0.212 4.212 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.196 1.196 23 H -0.196 1.196 24 C -0.086 4.086 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.196 0.804 29 H 0.185 0.815 30 H 0.156 0.844 31 H 0.170 0.830 32 H 0.254 0.746 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -23.340 12.208 0.054 26.340 hybrid contribution 0.917 -1.051 0.008 1.395 sum -22.423 11.157 0.062 25.046 Atomic orbital electron populations 1.20810 0.87562 1.04469 1.03724 1.21226 0.99411 0.93216 1.00065 1.23325 0.89559 0.99126 0.94178 1.67676 1.09253 1.31798 1.12893 1.23358 1.01171 0.87014 0.94483 1.20029 0.94740 0.93868 1.04376 1.22231 0.93101 0.97004 0.90414 1.22877 0.94887 0.97268 1.07536 1.18722 0.81695 0.90221 0.75836 1.90780 1.71744 1.31674 1.52695 1.45631 1.05874 1.10181 1.73787 1.20793 0.87493 0.88102 1.04350 1.20434 0.88287 0.85787 0.83562 1.90474 1.82221 1.20496 1.58009 1.41854 1.05737 1.08500 1.63409 1.19778 0.81903 0.94621 1.50319 0.89563 1.26141 1.04863 0.94415 0.95793 1.69683 1.36964 0.99623 1.49318 0.84800 0.76348 0.78451 0.78308 1.19448 1.19632 1.19620 1.22070 0.92337 1.00009 0.94143 0.89753 0.89709 0.90247 0.80430 0.81474 0.84387 0.82950 0.74617 0.88653 0.88660 0.76674 0.91057 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.03 71.24 0.71 0.12 16 2 C -0.14 -1.66 5.89 -19.81 -0.12 -1.78 16 3 C 0.09 1.39 10.85 84.71 0.92 2.31 16 4 N -0.51 -10.26 10.34 -194.51 -2.01 -12.27 16 5 C 0.10 1.85 10.59 85.10 0.90 2.75 16 6 C -0.13 -2.27 5.88 -20.05 -0.12 -2.39 16 7 C -0.01 -0.14 9.48 23.84 0.23 0.09 16 8 C -0.21 -4.59 9.42 23.61 0.22 -4.37 16 9 C 0.54 16.63 7.74 86.37 0.67 17.30 16 10 O -0.59 -21.33 16.23 -4.36 -0.07 -21.40 16 11 N -0.70 -22.88 5.52 -471.08 -2.60 -25.48 16 12 C 0.12 4.39 6.15 85.63 0.53 4.91 16 13 C 0.43 19.94 7.85 87.66 0.69 20.63 16 14 O -0.62 -32.24 15.24 -3.05 -0.05 -32.29 16 15 N -0.56 -28.12 5.29 -306.98 -1.62 -29.75 16 16 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16 17 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 18 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 19 N -0.92 -48.64 13.05 21.66 0.28 -48.36 16 20 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.06 -0.84 9.62 22.78 0.22 -0.62 16 25 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.08 0.27 8.09 -2.39 -0.02 0.25 16 27 H 0.08 0.33 8.09 -2.39 -0.02 0.31 16 28 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 29 H 0.17 2.75 6.19 -2.91 -0.02 2.73 16 30 H 0.14 2.76 7.52 -2.91 -0.02 2.74 16 31 H 0.15 2.67 6.10 -2.91 -0.02 2.65 16 32 H 0.42 13.20 7.42 -92.71 -0.69 12.51 16 33 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 36 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 37 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -69.78 332.56 1.80 -67.99 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -0.29 Total: 36.66 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 6.13 Total: 21.05 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -5.95 Total: -115.86 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.12 Total: -53.69 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -69.78 1.80 -67.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492885901.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.803 kcal (2) G-P(sol) polarization free energy of solvation -69.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds