Wall clock time and date at job start Tue Mar 31 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38333 * 120.86476 * 2 1 4 4 C 1.38351 * 119.33479 * 180.02562 * 3 2 1 5 5 N 1.31962 * 121.14240 * 0.02562 * 4 3 2 6 6 C 1.31634 * 121.90328 * 359.97438 * 5 4 3 7 7 C 1.39833 * 120.52630 * 0.02562 * 6 5 4 8 8 C 1.47207 * 120.58701 * 179.97438 * 7 6 5 9 9 C 1.34815 * 120.00243 * 310.70630 * 8 7 6 10 10 C 1.46426 * 119.99624 * 349.94891 * 9 8 7 11 11 O 1.21695 * 120.00177 * 353.28112 * 10 9 8 12 12 N 1.34772 * 119.99783 * 173.28592 * 10 9 8 13 13 C 1.46496 * 120.00163 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47615 * 179.97438 * 13 12 10 15 15 O 1.21290 * 119.99620 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00439 * 179.97438 * 14 13 12 17 17 C 1.37102 * 120.00292 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99412 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00248 * 180.02562 * 17 16 14 20 20 N 1.31420 * 119.99778 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00159 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46841 * 90.00050 * 21 19 17 23 23 H 1.48494 * 109.47240 * 209.99831 * 21 19 17 24 24 H 1.48502 * 109.47172 * 330.00336 * 21 19 17 25 25 H 1.08994 * 109.47360 * 269.97476 * 1 2 3 26 26 H 1.08998 * 109.46935 * 29.98373 * 1 2 3 27 27 H 1.09000 * 109.46764 * 149.97913 * 1 2 3 28 28 H 1.07999 * 120.33225 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.42667 * 179.97438 * 4 3 2 30 30 H 1.08003 * 119.73589 * 180.27492 * 6 5 4 31 31 H 1.08007 * 120.00257 * 130.71018 * 8 7 6 32 32 H 1.07996 * 119.99877 * 169.94543 * 9 8 7 33 33 H 0.97005 * 119.99912 * 359.97438 * 12 10 9 34 34 H 1.08995 * 109.47373 * 300.00383 * 13 12 10 35 35 H 1.09008 * 109.47051 * 60.00085 * 13 12 10 36 36 H 0.96996 * 120.00097 * 0.02562 * 16 14 13 37 37 H 0.97000 * 119.99824 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1874 0.0000 4 6 3.5997 1.1505 -0.0005 5 7 4.2517 0.0032 -0.0016 6 6 3.6239 -1.1538 -0.0016 7 6 2.2265 -1.2036 -0.0011 8 6 1.5231 -2.4967 -0.0017 9 6 1.8695 -3.4521 -0.8876 10 6 2.7844 -3.1350 -1.9859 11 8 3.1356 -1.9849 -2.1725 12 7 3.2374 -4.1169 -2.7904 13 6 4.1523 -3.7996 -3.8896 14 6 4.5057 -5.0637 -4.6299 15 8 4.0388 -6.1253 -4.2745 16 7 5.3397 -5.0147 -5.6875 17 6 5.6608 -6.1647 -6.3613 18 1 5.2450 -7.1099 -6.0448 19 6 6.5210 -6.1142 -7.4513 20 7 7.0273 -4.9641 -7.8360 21 14 6.9590 -7.6812 -8.3689 22 1 5.9823 -7.9021 -9.4654 23 1 8.3241 -7.5554 -8.9397 24 1 6.9188 -8.8318 -7.4309 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6963 2.1338 -0.0004 29 1 4.1552 2.0767 -0.0010 30 1 4.1927 -2.0719 0.0020 31 1 0.7294 -2.6801 0.7075 32 1 1.4722 -4.4513 -0.7870 33 1 2.9576 -5.0337 -2.6414 34 1 3.6705 -3.1005 -4.5731 35 1 5.0598 -3.3483 -3.4883 36 1 5.7128 -4.1657 -5.9720 37 1 7.6275 -4.9287 -8.5972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492901079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:19 Heat of formation + Delta-G solvation = -20.372900 kcal Electronic energy + Delta-G solvation = -21667.348186 eV Core-core repulsion = 18217.079926 eV Total energy + Delta-G solvation = -3450.268261 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.45557 -39.33075 -38.12116 -34.89420 -34.38984 -33.69502 -33.19581 -31.39735 -30.22756 -28.12342 -27.51199 -24.95070 -23.98707 -22.21658 -21.62837 -19.81986 -19.26576 -18.07213 -17.43059 -16.55159 -16.38386 -15.74164 -15.54623 -15.19590 -14.91003 -14.46227 -14.32600 -13.97529 -13.75392 -13.69996 -13.36064 -13.00573 -12.84321 -12.74242 -12.61908 -12.19759 -11.94930 -11.64108 -11.49639 -11.13244 -10.46602 -10.33640 -10.26784 -9.93002 -9.64573 -9.42534 -9.26530 -8.74971 -8.64721 -8.34887 -8.11093 -6.52176 -3.94407 0.61312 1.33513 1.67173 3.11049 3.21392 3.26100 3.38308 3.43188 3.73364 3.88250 4.11022 4.42163 4.60763 4.67296 4.74770 4.83929 4.87547 5.09980 5.16290 5.21540 5.29637 5.35751 5.46366 5.69323 5.77090 5.87025 5.93179 5.95215 5.99576 6.06150 6.16414 6.31702 6.65497 6.75587 7.45231 7.80287 7.91036 8.09074 8.41660 8.45810 9.03605 9.38272 9.85957 10.64680 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.002909 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.862437 B = 9624.304064 C =10140.449350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.032 4.032 3 C -0.185 4.185 4 C 0.103 3.897 5 N -0.492 5.492 6 C 0.174 3.826 7 C -0.112 4.112 8 C -0.032 4.032 9 C -0.193 4.193 10 C 0.533 3.467 11 O -0.540 6.540 12 N -0.699 5.699 13 C 0.109 3.891 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.548 5.548 17 C -0.306 4.306 18 H 0.106 0.894 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.933 3.067 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.268 1.268 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.411 0.589 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 9.560 15.672 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.040 4.040 3 C -0.205 4.205 4 C -0.052 4.052 5 N -0.202 5.202 6 C 0.016 3.984 7 C -0.114 4.114 8 C -0.052 4.052 9 C -0.214 4.214 10 C 0.321 3.679 11 O -0.420 6.420 12 N -0.352 5.352 13 C -0.018 4.018 14 C 0.213 3.787 15 O -0.485 6.485 16 N -0.183 5.183 17 C -0.435 4.435 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.760 3.240 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.249 0.751 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.230 0.770 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.548 9.715 15.550 21.153 hybrid contribution -0.534 -0.697 -0.865 1.233 sum -11.082 9.019 14.684 20.489 Atomic orbital electron populations 1.20811 0.90533 1.03382 1.02495 1.20312 0.96185 0.92203 0.95273 1.21807 0.95608 0.98178 1.04945 1.22709 0.91627 0.96243 0.94664 1.67581 1.40908 0.98387 1.13290 1.22690 0.90167 0.95747 0.89839 1.19741 0.94827 0.93054 1.03746 1.22154 0.95708 0.91051 0.96329 1.23110 1.01516 1.00330 0.96401 1.18434 0.81235 0.85240 0.83036 1.90869 1.58893 1.19753 1.72438 1.45691 1.47157 1.11714 1.30621 1.20945 0.94388 0.97054 0.89453 1.19742 0.84889 0.89666 0.84387 1.90492 1.57778 1.30956 1.69269 1.41800 1.39892 1.10989 1.25630 1.19730 1.25834 0.88323 1.09612 0.87668 1.25334 0.96417 0.98620 0.97349 1.69621 1.31740 1.24776 1.27291 0.85807 0.77733 0.81044 0.79414 1.20263 1.20774 1.19296 0.90660 0.91068 0.91061 0.85246 0.83273 0.83778 0.84504 0.84463 0.75077 0.89899 0.89768 0.77027 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.69 36.00 0.35 -0.54 16 2 C -0.03 -0.36 5.96 -103.84 -0.62 -0.97 16 3 C -0.19 -1.99 9.80 -39.50 -0.39 -2.38 16 4 C 0.10 1.26 11.17 -17.45 -0.19 1.07 16 5 N -0.49 -7.43 10.34 -12.83 -0.13 -7.56 16 6 C 0.17 2.52 7.95 -17.04 -0.14 2.38 16 7 C -0.11 -1.38 4.33 -104.91 -0.45 -1.83 16 8 C -0.03 -0.31 8.43 -37.15 -0.31 -0.63 16 9 C -0.19 -2.11 9.96 -37.50 -0.37 -2.48 16 10 C 0.53 8.09 7.02 -12.97 -0.09 8.00 16 11 O -0.54 -9.71 12.43 5.19 0.06 -9.65 16 12 N -0.70 -11.40 5.52 -62.89 -0.35 -11.74 16 13 C 0.11 2.03 6.15 -5.20 -0.03 1.99 16 14 C 0.43 9.82 7.85 -10.99 -0.09 9.73 16 15 O -0.60 -15.24 15.24 5.55 0.08 -15.16 16 16 N -0.55 -13.69 5.29 -10.97 -0.06 -13.75 16 17 C -0.31 -8.33 9.68 -14.93 -0.14 -8.48 16 18 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 20 N -0.89 -24.02 13.05 55.50 0.72 -23.29 16 21 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.49 8.10 -51.93 -0.42 0.06 16 27 H 0.07 0.54 7.19 -51.93 -0.37 0.17 16 28 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 30 H 0.14 2.06 7.53 -52.48 -0.40 1.67 16 31 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 33 H 0.41 6.51 7.42 -40.82 -0.30 6.21 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 36 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -32.96 326.50 -6.63 -39.59 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -4.28 Total: 14.64 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -2.58 Total: 6.44 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.19 Total: -56.35 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.15 Total: -24.81 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.96 -6.63 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492901079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.214 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds