Wall clock time and date at job start Tue Mar 31 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38333 * 120.86476 * 2 1 4 4 C 1.38351 * 119.33479 * 180.02562 * 3 2 1 5 5 N 1.31962 * 121.14240 * 0.02562 * 4 3 2 6 6 C 1.31634 * 121.90328 * 359.97438 * 5 4 3 7 7 C 1.39833 * 120.52630 * 0.02562 * 6 5 4 8 8 C 1.47207 * 120.58701 * 179.97438 * 7 6 5 9 9 C 1.34815 * 120.00243 * 310.70630 * 8 7 6 10 10 C 1.46426 * 119.99624 * 349.94891 * 9 8 7 11 11 O 1.21695 * 120.00177 * 353.28112 * 10 9 8 12 12 N 1.34772 * 119.99783 * 173.28592 * 10 9 8 13 13 C 1.46496 * 120.00163 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47615 * 179.97438 * 13 12 10 15 15 O 1.21290 * 119.99620 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00439 * 179.97438 * 14 13 12 17 17 C 1.37102 * 120.00292 * 180.02562 * 16 14 13 18 18 H 1.07997 * 119.99412 * 0.02562 * 17 16 14 19 19 C 1.38945 * 120.00248 * 180.02562 * 17 16 14 20 20 N 1.31420 * 119.99778 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00159 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46841 * 90.00050 * 21 19 17 23 23 H 1.48494 * 109.47240 * 209.99831 * 21 19 17 24 24 H 1.48502 * 109.47172 * 330.00336 * 21 19 17 25 25 H 1.08994 * 109.47360 * 269.97476 * 1 2 3 26 26 H 1.08998 * 109.46935 * 29.98373 * 1 2 3 27 27 H 1.09000 * 109.46764 * 149.97913 * 1 2 3 28 28 H 1.07999 * 120.33225 * 359.97438 * 3 2 1 29 29 H 1.08004 * 119.42667 * 179.97438 * 4 3 2 30 30 H 1.08003 * 119.73589 * 180.27492 * 6 5 4 31 31 H 1.08007 * 120.00257 * 130.71018 * 8 7 6 32 32 H 1.07996 * 119.99877 * 169.94543 * 9 8 7 33 33 H 0.97005 * 119.99912 * 359.97438 * 12 10 9 34 34 H 1.08995 * 109.47373 * 300.00383 * 13 12 10 35 35 H 1.09008 * 109.47051 * 60.00085 * 13 12 10 36 36 H 0.96996 * 120.00097 * 0.02562 * 16 14 13 37 37 H 0.97000 * 119.99824 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1874 0.0000 4 6 3.5997 1.1505 -0.0005 5 7 4.2517 0.0032 -0.0016 6 6 3.6239 -1.1538 -0.0016 7 6 2.2265 -1.2036 -0.0011 8 6 1.5231 -2.4967 -0.0017 9 6 1.8695 -3.4521 -0.8876 10 6 2.7844 -3.1350 -1.9859 11 8 3.1356 -1.9849 -2.1725 12 7 3.2374 -4.1169 -2.7904 13 6 4.1523 -3.7996 -3.8896 14 6 4.5057 -5.0637 -4.6299 15 8 4.0388 -6.1253 -4.2745 16 7 5.3397 -5.0147 -5.6875 17 6 5.6608 -6.1647 -6.3613 18 1 5.2450 -7.1099 -6.0448 19 6 6.5210 -6.1142 -7.4513 20 7 7.0273 -4.9641 -7.8360 21 14 6.9590 -7.6812 -8.3689 22 1 5.9823 -7.9021 -9.4654 23 1 8.3241 -7.5554 -8.9397 24 1 6.9188 -8.8318 -7.4309 25 1 -0.3634 -0.0005 1.0276 26 1 -0.3633 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6963 2.1338 -0.0004 29 1 4.1552 2.0767 -0.0010 30 1 4.1927 -2.0719 0.0020 31 1 0.7294 -2.6801 0.7075 32 1 1.4722 -4.4513 -0.7870 33 1 2.9576 -5.0337 -2.6414 34 1 3.6705 -3.1005 -4.5731 35 1 5.0598 -3.3483 -3.4883 36 1 5.7128 -4.1657 -5.9720 37 1 7.6275 -4.9287 -8.5972 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492901079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:19 Heat of formation + Delta-G solvation = -44.557638 kcal Electronic energy + Delta-G solvation = -21668.396915 eV Core-core repulsion = 18217.079926 eV Total energy + Delta-G solvation = -3451.316990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.47209 -40.65398 -39.78945 -36.31612 -35.71544 -35.20517 -34.06522 -33.39797 -31.19745 -29.42054 -28.46014 -26.66586 -25.14845 -23.17467 -22.63079 -21.40650 -20.65675 -20.00521 -18.56406 -17.60091 -17.40172 -17.19865 -16.94767 -16.65304 -16.45308 -15.90150 -15.50054 -15.46948 -15.11026 -14.73488 -14.39168 -14.03508 -13.80781 -13.69652 -13.56542 -13.51911 -13.48262 -13.34337 -12.91815 -12.47758 -12.27301 -12.13587 -11.58778 -11.26105 -10.97878 -10.58638 -10.32873 -10.25623 -10.13045 -9.99320 -9.29103 -8.52915 -6.03632 -0.27733 0.44794 0.77082 1.35098 1.41582 1.54604 1.87607 2.09477 2.30439 2.33512 2.95737 3.11518 3.14136 3.57937 3.76086 3.88831 3.91323 3.95284 4.19047 4.27193 4.39387 4.40917 4.52411 4.64604 4.66043 4.83290 4.90085 5.02658 5.10557 5.24749 5.28279 5.36196 5.37530 5.48202 5.89013 5.90059 6.44263 6.58313 7.01055 7.14865 7.21848 7.41923 7.91251 8.64097 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.031961 B = 0.002909 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.862437 B = 9624.304064 C =10140.449350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.038 4.038 3 C -0.184 4.184 4 C 0.083 3.917 5 N -0.531 5.531 6 C 0.148 3.852 7 C -0.127 4.127 8 C -0.009 4.009 9 C -0.205 4.205 10 C 0.530 3.470 11 O -0.571 6.571 12 N -0.702 5.702 13 C 0.125 3.875 14 C 0.433 3.567 15 O -0.622 6.622 16 N -0.560 5.560 17 C -0.338 4.338 18 H 0.087 0.913 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.998 3.002 22 H -0.269 1.269 23 H -0.272 1.272 24 H -0.269 1.269 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.161 0.839 29 H 0.170 0.830 30 H 0.130 0.870 31 H 0.182 0.818 32 H 0.170 0.830 33 H 0.414 0.586 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.398 0.602 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.533 9.864 16.491 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.045 4.045 3 C -0.203 4.203 4 C -0.071 4.071 5 N -0.241 5.241 6 C -0.010 4.010 7 C -0.129 4.129 8 C -0.029 4.029 9 C -0.226 4.226 10 C 0.321 3.679 11 O -0.453 6.453 12 N -0.356 5.356 13 C -0.004 4.004 14 C 0.220 3.780 15 O -0.510 6.510 16 N -0.195 5.195 17 C -0.467 4.467 18 H 0.105 0.895 19 C -0.212 4.212 20 N -0.557 5.557 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.193 1.193 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.179 0.821 29 H 0.187 0.813 30 H 0.148 0.852 31 H 0.199 0.801 32 H 0.187 0.813 33 H 0.253 0.747 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.232 0.768 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.517 10.030 16.387 22.931 hybrid contribution 0.043 -0.659 -1.034 1.227 sum -12.475 9.371 15.353 21.889 Atomic orbital electron populations 1.20896 0.87738 1.04069 1.04225 1.20818 0.98184 0.91670 0.93872 1.22195 0.95081 0.99683 1.03385 1.23163 0.92965 0.96164 0.94840 1.67492 1.42419 0.99429 1.14722 1.22638 0.91426 0.95288 0.91642 1.20024 0.94217 0.94999 1.03632 1.22575 0.95232 0.89149 0.95981 1.23142 1.01429 1.02302 0.95693 1.19166 0.81012 0.84366 0.83384 1.90865 1.60127 1.20975 1.73320 1.45715 1.47184 1.12274 1.30402 1.20680 0.95263 0.94474 0.89948 1.20409 0.83351 0.90720 0.83536 1.90465 1.58308 1.32518 1.69759 1.41866 1.40732 1.10576 1.26364 1.19756 1.27371 0.88483 1.11102 0.89460 1.26165 0.95687 1.01815 0.97542 1.69691 1.31938 1.26392 1.27712 0.84847 0.77886 0.77088 0.78050 1.19455 1.19661 1.19334 0.88226 0.90016 0.90779 0.82102 0.81317 0.85244 0.80063 0.81288 0.74737 0.89318 0.89453 0.76835 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.69 71.24 0.69 -0.61 16 2 C -0.04 -0.75 5.96 -19.36 -0.12 -0.86 16 3 C -0.18 -3.60 9.80 22.32 0.22 -3.38 16 4 C 0.08 2.02 11.17 84.70 0.95 2.96 16 5 N -0.53 -16.46 10.34 -194.51 -2.01 -18.47 16 6 C 0.15 4.37 7.95 85.11 0.68 5.05 16 7 C -0.13 -2.96 4.33 -20.05 -0.09 -3.05 16 8 C -0.01 -0.16 8.43 23.84 0.20 0.04 16 9 C -0.21 -4.06 9.96 23.62 0.24 -3.83 16 10 C 0.53 15.86 7.02 86.38 0.61 16.46 16 11 O -0.57 -20.71 12.43 -4.33 -0.05 -20.76 16 12 N -0.70 -22.84 5.52 -471.10 -2.60 -25.44 16 13 C 0.12 4.68 6.15 85.63 0.53 5.21 16 14 C 0.43 20.28 7.85 87.66 0.69 20.96 16 15 O -0.62 -32.25 15.24 -3.06 -0.05 -32.30 16 16 N -0.56 -28.66 5.29 -307.00 -1.62 -30.28 16 17 C -0.34 -18.81 9.68 84.04 0.81 -18.00 16 18 H 0.09 5.09 7.16 -2.91 -0.02 5.06 16 19 C -0.01 -0.61 5.50 84.92 0.47 -0.14 16 20 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 21 Si 1.00 42.04 29.55 68.60 2.03 44.07 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.08 0.80 8.10 -2.39 -0.02 0.78 16 27 H 0.07 0.84 7.19 -2.39 -0.02 0.82 16 28 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 29 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.13 3.95 7.53 -2.91 -0.02 3.93 16 31 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.41 13.01 7.42 -92.70 -0.69 12.32 16 34 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 36 H 0.40 19.73 7.90 -92.71 -0.73 18.99 16 37 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -73.06 326.50 1.54 -71.52 By element: Atomic # 1 Polarization: 40.30 SS G_CDS: -0.30 Total: 40.00 kcal Atomic # 6 Polarization: 14.96 SS G_CDS: 5.87 Total: 20.83 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -5.95 Total: -123.36 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -0.10 Total: -53.06 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -73.06 1.54 -71.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492901079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.960 kcal (2) G-P(sol) polarization free energy of solvation -73.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds