Wall clock time and date at job start Tue Mar 31 2020 02:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38738 * 120.29204 * 2 1 4 4 C 1.38429 * 118.52143 * 179.97438 * 3 2 1 5 5 C 1.39669 * 119.03862 * 359.97438 * 4 3 2 6 6 C 1.47386 * 119.75630 * 180.02562 * 5 4 3 7 7 C 1.34642 * 120.00590 * 130.84276 * 6 5 4 8 8 C 1.46665 * 119.99474 * 352.05450 * 7 6 5 9 9 O 1.21667 * 120.00191 * 353.81182 * 8 7 6 10 10 N 1.34780 * 119.99883 * 173.81424 * 8 7 6 11 11 C 1.46503 * 119.99901 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46785 * 179.97438 * 11 10 8 13 13 O 1.21290 * 120.00050 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99500 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99447 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00265 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99403 * 180.02562 * 15 14 12 18 18 N 1.31402 * 120.00273 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99422 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47553 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47050 * 120.00167 * 19 17 15 22 22 H 1.48503 * 109.46858 * 239.99790 * 19 17 15 23 23 N 1.32933 * 120.48808 * 0.27518 * 5 4 3 24 24 C 1.31560 * 121.59957 * 359.43368 * 23 5 4 25 25 H 1.09003 * 109.46904 * 89.99804 * 1 2 3 26 26 H 1.08993 * 109.47438 * 210.00036 * 1 2 3 27 27 H 1.08998 * 109.47398 * 330.00160 * 1 2 3 28 28 H 1.07999 * 120.73722 * 359.95291 * 3 2 1 29 29 H 1.08005 * 120.48062 * 179.97438 * 4 3 2 30 30 H 1.08007 * 119.99820 * 310.84098 * 6 5 4 31 31 H 1.07996 * 120.00363 * 172.05655 * 7 6 5 32 32 H 0.96998 * 119.99677 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47021 * 299.99591 * 11 10 8 34 34 H 1.09005 * 109.46812 * 59.99855 * 11 10 8 35 35 H 0.96992 * 120.00455 * 359.97438 * 14 12 11 36 36 H 0.97002 * 120.00128 * 180.02562 * 18 17 15 37 37 H 1.08006 * 119.53333 * 180.26453 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1980 0.0000 4 6 3.5904 1.1552 0.0005 5 6 4.2303 -0.0863 0.0016 6 6 5.7028 -0.1503 0.0028 7 6 6.3417 -0.9409 0.8857 8 6 5.5887 -1.6022 1.9565 9 8 4.4094 -1.3494 2.1167 10 7 6.2031 -2.4901 2.7633 11 6 5.4511 -3.1502 3.8333 12 6 6.3621 -4.0881 4.5826 13 8 7.5252 -4.1942 4.2554 14 7 5.8843 -4.8089 5.6164 15 6 6.7133 -5.6618 6.2984 16 1 7.7489 -5.7563 6.0071 17 6 6.2206 -6.4053 7.3639 18 7 4.9604 -6.2907 7.7181 19 14 7.3498 -7.5679 8.2927 20 1 8.7110 -7.5134 7.7016 21 1 7.4137 -7.1612 9.7196 22 1 6.8225 -8.9527 8.1959 23 7 3.5211 -1.2106 -0.0034 24 6 2.2056 -1.1959 0.0016 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6837 2.1428 -0.0008 29 1 4.1668 2.0686 0.0001 30 1 6.2694 0.4371 -0.7047 31 1 7.4086 -1.0881 0.8054 32 1 7.1432 -2.6919 2.6354 33 1 5.0591 -2.3989 4.5188 34 1 4.6246 -3.7147 3.4015 35 1 4.9543 -4.7238 5.8783 36 1 4.6165 -6.8095 8.4621 37 1 1.6627 -2.1296 0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492924197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:43 Heat of formation + Delta-G solvation = -12.664677 kcal Electronic energy + Delta-G solvation = -21517.976627 eV Core-core repulsion = 18068.042619 eV Total energy + Delta-G solvation = -3449.934007 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.29680 -39.23909 -38.04457 -34.74465 -34.21388 -33.53339 -32.61359 -31.47576 -31.32256 -28.16340 -26.82932 -24.71134 -23.80750 -22.73141 -21.47212 -19.72653 -19.26145 -18.07168 -17.60362 -16.48553 -15.97992 -15.52065 -15.25545 -15.08977 -15.01638 -14.49953 -14.28289 -13.89770 -13.79329 -13.65842 -13.22620 -13.04029 -12.81370 -12.56580 -12.38711 -12.13413 -11.88340 -11.62316 -11.57474 -11.13082 -10.39703 -10.31052 -10.03306 -9.80655 -9.63022 -9.51316 -9.23336 -8.64469 -8.60341 -8.38363 -8.08222 -6.49879 -3.91721 0.70306 1.37042 1.69587 3.11387 3.23158 3.29694 3.51901 3.58205 3.77656 3.91306 4.13568 4.28681 4.64399 4.77162 4.90684 4.92066 4.95704 5.08187 5.18915 5.24507 5.32824 5.40298 5.54517 5.77941 5.80975 5.87435 5.94034 6.02057 6.10708 6.15920 6.20288 6.29295 6.75837 6.79302 7.47764 7.93868 7.95178 8.12472 8.47030 8.60788 9.06503 9.41582 9.89591 10.67210 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026937 B = 0.002936 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.224537 B = 9535.076104 C =10367.855396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.143 4.143 3 C -0.083 4.083 4 C -0.158 4.158 5 C 0.156 3.844 6 C -0.045 4.045 7 C -0.164 4.164 8 C 0.538 3.462 9 O -0.533 6.533 10 N -0.703 5.703 11 C 0.112 3.888 12 C 0.429 3.571 13 O -0.597 6.597 14 N -0.551 5.551 15 C -0.304 4.304 16 H 0.106 0.894 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.932 3.068 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 N -0.433 5.433 24 C 0.110 3.890 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.410 0.590 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.396 0.604 36 H 0.273 0.727 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 14.278 -15.427 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.145 4.145 3 C -0.108 4.108 4 C -0.178 4.178 5 C 0.021 3.979 6 C -0.066 4.066 7 C -0.186 4.186 8 C 0.326 3.674 9 O -0.411 6.411 10 N -0.357 5.357 11 C -0.016 4.016 12 C 0.215 3.785 13 O -0.484 6.484 14 N -0.185 5.185 15 C -0.433 4.433 16 H 0.124 0.876 17 C -0.178 4.178 18 N -0.536 5.536 19 Si 0.759 3.241 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 N -0.140 5.140 24 C -0.050 4.050 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.161 0.839 31 H 0.155 0.845 32 H 0.247 0.753 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.229 0.771 36 H 0.083 0.917 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.455 13.450 -15.331 21.112 hybrid contribution -0.044 0.127 0.820 0.831 sum -5.499 13.577 -14.511 20.619 Atomic orbital electron populations 1.20696 0.90591 1.03058 1.02168 1.20972 0.97300 0.94401 1.01848 1.21267 0.93868 0.97856 0.97841 1.21996 0.95089 0.98231 1.02504 1.19781 0.93579 0.88857 0.95687 1.22088 0.91182 0.96196 0.97101 1.23133 1.00661 0.98452 0.96389 1.18343 0.87062 0.79670 0.82337 1.90804 1.15453 1.63371 1.71450 1.45620 1.15189 1.42615 1.32294 1.20893 0.94560 0.96110 0.89997 1.19782 0.88793 0.85578 0.84337 1.90491 1.18109 1.70268 1.69518 1.41807 1.13063 1.36577 1.27091 1.19784 0.95209 1.17638 1.10706 0.87638 1.25325 0.96498 0.98498 0.97455 1.69621 1.13526 1.41647 1.28760 0.85761 0.80022 0.79367 0.78954 1.19131 1.20632 1.20612 1.67750 1.07896 1.29953 1.08446 1.22515 0.89753 0.97099 0.95588 0.91226 0.91188 0.91583 0.85308 0.85175 0.83865 0.84525 0.75253 0.90116 0.89956 0.77067 0.91670 0.83309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.03 36.01 0.36 -0.49 16 2 C -0.14 -1.60 5.91 -104.34 -0.62 -2.22 16 3 C -0.08 -0.87 9.84 -39.33 -0.39 -1.26 16 4 C -0.16 -1.78 9.84 -38.98 -0.38 -2.16 16 5 C 0.16 2.11 4.92 -83.13 -0.41 1.71 16 6 C -0.05 -0.51 9.88 -37.13 -0.37 -0.87 16 7 C -0.16 -2.04 10.04 -37.45 -0.38 -2.42 16 8 C 0.54 9.01 7.48 -12.86 -0.10 8.91 16 9 O -0.53 -10.29 12.74 5.22 0.07 -10.23 16 10 N -0.70 -12.32 5.52 -62.80 -0.35 -12.66 16 11 C 0.11 2.17 6.15 -5.19 -0.03 2.14 16 12 C 0.43 10.11 7.85 -10.98 -0.09 10.02 16 13 O -0.60 -15.59 15.24 5.55 0.08 -15.51 16 14 N -0.55 -13.94 5.29 -10.96 -0.06 -14.00 16 15 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 16 H 0.11 3.03 7.16 -52.49 -0.38 2.66 16 17 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 18 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 19 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 N -0.43 -6.71 7.70 -9.90 -0.08 -6.78 16 24 C 0.11 1.48 10.84 -17.57 -0.19 1.29 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 29 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.41 6.96 7.42 -40.82 -0.30 6.66 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.40 9.66 7.90 -40.82 -0.32 9.34 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.15 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -33.80 330.08 -6.84 -40.63 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -4.36 Total: 14.64 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -2.82 Total: 6.69 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.24 Total: -56.92 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.15 Total: -25.73 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.80 -6.84 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492924197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.970 kcal (2) G-P(sol) polarization free energy of solvation -33.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds