Wall clock time and date at job start Tue Mar 31 2020 02:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38738 * 120.29204 * 2 1 4 4 C 1.38429 * 118.52143 * 179.97438 * 3 2 1 5 5 C 1.39669 * 119.03862 * 359.97438 * 4 3 2 6 6 C 1.47386 * 119.75630 * 180.02562 * 5 4 3 7 7 C 1.34642 * 120.00590 * 130.84276 * 6 5 4 8 8 C 1.46665 * 119.99474 * 352.05450 * 7 6 5 9 9 O 1.21667 * 120.00191 * 353.81182 * 8 7 6 10 10 N 1.34780 * 119.99883 * 173.81424 * 8 7 6 11 11 C 1.46503 * 119.99901 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.46785 * 179.97438 * 11 10 8 13 13 O 1.21290 * 120.00050 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99500 * 180.02562 * 12 11 10 15 15 C 1.37102 * 119.99447 * 180.02562 * 14 12 11 16 16 H 1.07997 * 120.00265 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99403 * 180.02562 * 15 14 12 18 18 N 1.31402 * 120.00273 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99422 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47553 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47050 * 120.00167 * 19 17 15 22 22 H 1.48503 * 109.46858 * 239.99790 * 19 17 15 23 23 N 1.32933 * 120.48808 * 0.27518 * 5 4 3 24 24 C 1.31560 * 121.59957 * 359.43368 * 23 5 4 25 25 H 1.09003 * 109.46904 * 89.99804 * 1 2 3 26 26 H 1.08993 * 109.47438 * 210.00036 * 1 2 3 27 27 H 1.08998 * 109.47398 * 330.00160 * 1 2 3 28 28 H 1.07999 * 120.73722 * 359.95291 * 3 2 1 29 29 H 1.08005 * 120.48062 * 179.97438 * 4 3 2 30 30 H 1.08007 * 119.99820 * 310.84098 * 6 5 4 31 31 H 1.07996 * 120.00363 * 172.05655 * 7 6 5 32 32 H 0.96998 * 119.99677 * 359.97438 * 10 8 7 33 33 H 1.09001 * 109.47021 * 299.99591 * 11 10 8 34 34 H 1.09005 * 109.46812 * 59.99855 * 11 10 8 35 35 H 0.96992 * 120.00455 * 359.97438 * 14 12 11 36 36 H 0.97002 * 120.00128 * 180.02562 * 18 17 15 37 37 H 1.08006 * 119.53333 * 180.26453 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1980 0.0000 4 6 3.5904 1.1552 0.0005 5 6 4.2303 -0.0863 0.0016 6 6 5.7028 -0.1503 0.0028 7 6 6.3417 -0.9409 0.8857 8 6 5.5887 -1.6022 1.9565 9 8 4.4094 -1.3494 2.1167 10 7 6.2031 -2.4901 2.7633 11 6 5.4511 -3.1502 3.8333 12 6 6.3621 -4.0881 4.5826 13 8 7.5252 -4.1942 4.2554 14 7 5.8843 -4.8089 5.6164 15 6 6.7133 -5.6618 6.2984 16 1 7.7489 -5.7563 6.0071 17 6 6.2206 -6.4053 7.3639 18 7 4.9604 -6.2907 7.7181 19 14 7.3498 -7.5679 8.2927 20 1 8.7110 -7.5134 7.7016 21 1 7.4137 -7.1612 9.7196 22 1 6.8225 -8.9527 8.1959 23 7 3.5211 -1.2106 -0.0034 24 6 2.2056 -1.1959 0.0016 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6837 2.1428 -0.0008 29 1 4.1668 2.0686 0.0001 30 1 6.2694 0.4371 -0.7047 31 1 7.4086 -1.0881 0.8054 32 1 7.1432 -2.6919 2.6354 33 1 5.0591 -2.3989 4.5188 34 1 4.6246 -3.7147 3.4015 35 1 4.9543 -4.7238 5.8783 36 1 4.6165 -6.8095 8.4621 37 1 1.6627 -2.1296 0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492924197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:42 Heat of formation + Delta-G solvation = -36.896596 kcal Electronic energy + Delta-G solvation = -21519.027401 eV Core-core repulsion = 18068.042619 eV Total energy + Delta-G solvation = -3450.984782 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31073 -40.63924 -39.74188 -36.29207 -35.57375 -35.01679 -33.53173 -33.38133 -32.29194 -29.62513 -27.84726 -26.51151 -24.81702 -23.70625 -22.51051 -21.39030 -20.65889 -20.01750 -18.78959 -17.57397 -17.38784 -17.01039 -16.65190 -16.62161 -16.11417 -15.92904 -15.52003 -15.44529 -15.22986 -14.75908 -14.34414 -14.00591 -13.89273 -13.60787 -13.56967 -13.56031 -13.24367 -13.17206 -12.92375 -12.46695 -12.37329 -12.11901 -11.59860 -11.01289 -10.85828 -10.58451 -10.54515 -10.16340 -10.13683 -10.03155 -9.29352 -8.52923 -6.03453 -0.20431 0.48315 0.79229 1.33828 1.41641 1.56172 1.87529 2.11981 2.34124 2.39594 3.01094 3.12155 3.14045 3.46562 3.82412 3.96241 4.00451 4.15805 4.19599 4.23556 4.39861 4.41372 4.45643 4.61941 4.78578 4.83483 4.97363 5.01213 5.18100 5.31013 5.32560 5.34826 5.38161 5.46347 5.90094 5.92693 6.44904 6.63453 7.01296 7.20927 7.29385 7.42524 7.91648 8.64406 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.026937 B = 0.002936 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.224537 B = 9535.076104 C =10367.855396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.144 4.144 3 C -0.089 4.089 4 C -0.157 4.157 5 C 0.120 3.880 6 C -0.023 4.023 7 C -0.187 4.187 8 C 0.533 3.467 9 O -0.563 6.563 10 N -0.707 5.707 11 C 0.128 3.872 12 C 0.433 3.567 13 O -0.623 6.623 14 N -0.560 5.560 15 C -0.337 4.337 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.917 5.917 19 Si 0.999 3.001 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.270 1.270 23 N -0.470 5.470 24 C 0.078 3.922 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.161 0.839 29 H 0.161 0.839 30 H 0.191 0.809 31 H 0.169 0.831 32 H 0.412 0.588 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.398 0.602 36 H 0.280 0.720 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 15.784 -16.108 23.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.146 4.146 3 C -0.115 4.115 4 C -0.177 4.177 5 C -0.015 4.015 6 C -0.042 4.042 7 C -0.209 4.209 8 C 0.323 3.677 9 O -0.443 6.443 10 N -0.361 5.361 11 C -0.001 4.001 12 C 0.221 3.779 13 O -0.511 6.511 14 N -0.195 5.195 15 C -0.467 4.467 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.557 5.557 19 Si 0.822 3.178 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.196 1.196 23 N -0.179 5.179 24 C -0.081 4.081 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.179 0.821 29 H 0.179 0.821 30 H 0.208 0.792 31 H 0.186 0.814 32 H 0.250 0.750 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.476 14.970 -16.027 22.604 hybrid contribution -0.148 -0.257 0.952 0.998 sum -5.624 14.713 -15.075 21.803 Atomic orbital electron populations 1.20748 0.88412 1.03684 1.03381 1.21316 0.98959 0.93941 1.00362 1.21726 0.93993 0.98867 0.96888 1.22392 0.95810 0.98540 1.00924 1.20312 0.94871 0.89381 0.96967 1.22657 0.90427 0.94728 0.96434 1.23181 1.01927 0.99646 0.96103 1.19104 0.86993 0.78936 0.82653 1.90789 1.16892 1.64292 1.72329 1.45665 1.15180 1.43090 1.32190 1.20639 0.93667 0.95400 0.90347 1.20412 0.88868 0.85085 0.83581 1.90463 1.19543 1.71012 1.70077 1.41863 1.13012 1.36968 1.27703 1.19792 0.94950 1.19596 1.12329 0.89553 1.26162 0.97988 0.99426 0.97615 1.69687 1.14691 1.42172 1.29153 0.84791 0.77851 0.77450 0.77754 1.19380 1.19521 1.19565 1.67667 1.08959 1.31586 1.09663 1.22740 0.89801 0.98353 0.97188 0.89597 0.91335 0.90164 0.82135 0.82140 0.79236 0.81397 0.74963 0.89427 0.89730 0.76815 0.91035 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 10.03 71.24 0.71 -0.78 16 2 C -0.14 -3.07 5.91 -19.68 -0.12 -3.18 16 3 C -0.09 -1.68 9.84 22.43 0.22 -1.46 16 4 C -0.16 -3.17 9.84 22.66 0.22 -2.95 16 5 C 0.12 3.10 4.92 41.73 0.21 3.30 16 6 C -0.02 -0.45 9.88 23.86 0.24 -0.22 16 7 C -0.19 -4.36 10.04 23.65 0.24 -4.12 16 8 C 0.53 17.76 7.48 86.44 0.65 18.41 16 9 O -0.56 -22.00 12.74 -4.24 -0.05 -22.06 16 10 N -0.71 -24.91 5.52 -470.84 -2.60 -27.51 16 11 C 0.13 5.02 6.15 85.63 0.53 5.55 16 12 C 0.43 20.87 7.85 87.66 0.69 21.55 16 13 O -0.62 -33.20 15.24 -3.06 -0.05 -33.24 16 14 N -0.56 -29.09 5.29 -306.98 -1.62 -30.71 16 15 C -0.34 -19.00 9.68 84.04 0.81 -18.18 16 16 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 17 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 18 N -0.92 -49.55 13.05 21.66 0.28 -49.26 16 19 Si 1.00 42.32 29.55 68.60 2.03 44.35 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 N -0.47 -14.71 7.70 -185.24 -1.43 -16.14 16 24 C 0.08 2.15 10.84 84.80 0.92 3.07 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 27 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 28 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 29 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 31 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.41 14.07 7.42 -92.71 -0.69 13.38 16 33 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 35 H 0.40 19.95 7.90 -92.71 -0.73 19.22 16 36 H 0.28 14.08 8.31 -92.71 -0.77 13.30 16 37 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -74.48 330.08 2.04 -72.44 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -0.30 Total: 41.28 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 5.78 Total: 20.86 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -5.37 Total: -123.62 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -0.10 Total: -55.30 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -74.48 2.04 -72.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492924197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.543 kcal (2) G-P(sol) polarization free energy of solvation -74.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds