Wall clock time and date at job start Tue Mar 31 2020 02:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38734 * 120.28985 * 2 1 4 4 C 1.38434 * 118.51748 * 180.27299 * 3 2 1 5 5 C 1.39664 * 119.03919 * 359.74322 * 4 3 2 6 6 C 1.47391 * 119.75685 * 180.02562 * 5 4 3 7 7 C 1.34642 * 119.99941 * 180.02562 * 6 5 4 8 8 C 1.46667 * 119.99699 * 180.02562 * 7 6 5 9 9 O 1.21665 * 120.00065 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00193 * 179.97438 * 8 7 6 11 11 C 1.46492 * 120.00491 * 179.97438 * 10 8 7 12 12 C 1.50693 * 109.47455 * 180.02562 * 11 10 8 13 13 O 1.21299 * 119.99970 * 359.97438 * 12 11 10 14 14 N 1.34785 * 120.00214 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99775 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00391 * 0.02562 * 15 14 12 17 17 C 1.38950 * 119.99457 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00408 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99964 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46871 * 59.99853 * 19 17 15 21 21 H 1.48497 * 109.47330 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46794 * 299.99915 * 19 17 15 23 23 N 1.32935 * 120.49153 * 0.02768 * 5 4 3 24 24 C 1.31567 * 121.59706 * 359.97438 * 23 5 4 25 25 H 1.09000 * 109.47083 * 270.20682 * 1 2 3 26 26 H 1.08999 * 109.47521 * 30.20780 * 1 2 3 27 27 H 1.09001 * 109.47108 * 150.20818 * 1 2 3 28 28 H 1.07995 * 120.74014 * 359.97438 * 3 2 1 29 29 H 1.08008 * 120.47527 * 179.72788 * 4 3 2 30 30 H 1.08000 * 119.99616 * 0.02690 * 6 5 4 31 31 H 1.08000 * 120.00438 * 359.97438 * 7 6 5 32 32 H 0.97006 * 119.99697 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.47012 * 300.00025 * 11 10 8 34 34 H 1.09001 * 109.46922 * 59.99783 * 11 10 8 35 35 H 0.97002 * 119.99682 * 359.97438 * 14 12 11 36 36 H 0.96997 * 119.99950 * 180.02562 * 18 17 15 37 37 H 1.08002 * 119.52807 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1980 0.0000 4 6 3.5904 1.1551 -0.0058 5 6 4.2303 -0.0863 -0.0059 6 6 5.7028 -0.1503 -0.0115 7 6 6.3247 -1.3445 -0.0122 8 6 7.7900 -1.4082 -0.0171 9 8 8.4435 -0.3819 -0.0211 10 7 8.4126 -2.6035 -0.0173 11 6 9.8761 -2.6671 -0.0228 12 6 10.3163 -4.1083 -0.0225 13 8 9.4888 -4.9952 -0.0176 14 7 11.6295 -4.4119 -0.0276 15 6 12.0299 -5.7231 -0.0267 16 1 11.2932 -6.5128 -0.0224 17 6 13.3837 -6.0361 -0.0315 18 7 14.2803 -5.0753 -0.0363 19 14 13.9294 -7.8226 -0.0310 20 1 13.3998 -8.5022 -1.2405 21 1 15.4130 -7.8871 -0.0372 22 1 13.4092 -8.4987 1.1845 23 7 3.5211 -1.2107 -0.0011 24 6 2.2055 -1.1959 0.0044 25 1 -0.3633 0.0037 1.0277 26 1 -0.3634 0.8881 -0.5170 27 1 -0.3633 -0.8918 -0.5106 28 1 1.6837 2.1428 -0.0004 29 1 4.1667 2.0686 -0.0104 30 1 6.2828 0.7607 -0.0150 31 1 5.7447 -2.2555 -0.0082 32 1 7.8916 -3.4217 -0.0138 33 1 10.2580 -2.1712 -0.9153 34 1 10.2649 -2.1679 0.8647 35 1 12.2913 -3.7027 -0.0319 36 1 15.2253 -5.2938 -0.0400 37 1 1.6627 -2.1296 0.0077 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492924198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:45 Heat of formation + Delta-G solvation = -30.673311 kcal Electronic energy + Delta-G solvation = -20595.730087 eV Core-core repulsion = 17145.015167 eV Total energy + Delta-G solvation = -3450.714920 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.53083 -39.50879 -38.10128 -34.96362 -34.41625 -33.64517 -32.84368 -31.76011 -31.35515 -28.35997 -27.03606 -24.76665 -24.18270 -23.04442 -21.35013 -19.80210 -19.31571 -18.08528 -17.69554 -16.54200 -16.53291 -15.52490 -15.47654 -15.21604 -15.19319 -14.70663 -14.51394 -14.05366 -13.78094 -13.70872 -13.49205 -13.26710 -13.13341 -12.92954 -12.25843 -12.14380 -11.95209 -11.88729 -11.61730 -11.09358 -10.49549 -10.42134 -10.30286 -10.13924 -9.83703 -9.77784 -9.61416 -8.85174 -8.62026 -8.52992 -8.08837 -6.50082 -3.92118 0.22526 0.94567 1.72106 3.14995 3.22509 3.25383 3.33322 3.39415 3.68577 3.76523 3.95049 4.12717 4.36994 4.42787 4.56904 4.58982 4.88982 4.96043 5.09895 5.12906 5.17824 5.18266 5.31033 5.40772 5.53826 5.69185 5.86022 5.89937 5.97335 6.07910 6.17968 6.28776 6.36096 6.68759 7.47209 7.64836 7.82911 7.93108 8.42887 8.47717 9.05787 9.40452 9.88540 10.66708 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.043149 B = 0.002189 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.764040 B =12789.559013 C =13417.872802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.140 4.140 3 C -0.079 4.079 4 C -0.147 4.147 5 C 0.142 3.858 6 C -0.051 4.051 7 C -0.149 4.149 8 C 0.539 3.461 9 O -0.553 6.553 10 N -0.698 5.698 11 C 0.108 3.892 12 C 0.428 3.572 13 O -0.597 6.597 14 N -0.549 5.549 15 C -0.305 4.305 16 H 0.105 0.895 17 C 0.025 3.975 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 N -0.469 5.469 24 C 0.105 3.895 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.413 0.587 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.007 12.635 0.079 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.142 4.142 3 C -0.104 4.104 4 C -0.167 4.167 5 C 0.007 3.993 6 C -0.072 4.072 7 C -0.172 4.172 8 C 0.327 3.673 9 O -0.434 6.434 10 N -0.351 5.351 11 C -0.020 4.020 12 C 0.213 3.787 13 O -0.483 6.483 14 N -0.184 5.184 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 N -0.178 5.178 24 C -0.055 4.055 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.252 0.748 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.371 11.920 0.076 25.349 hybrid contribution 0.119 -0.025 0.003 0.121 sum -22.252 11.895 0.080 25.232 Atomic orbital electron populations 1.20736 0.90106 1.03237 1.02688 1.21083 0.97713 0.94279 1.01111 1.21445 0.93874 0.98265 0.96861 1.22219 0.95131 0.98727 1.00617 1.20053 0.93826 0.88745 0.96668 1.22101 0.89837 0.99073 0.96181 1.23180 0.93323 1.00000 1.00662 1.18398 0.88271 0.83485 0.77195 1.90783 1.67582 1.34055 1.50932 1.45633 1.07397 1.08982 1.73085 1.20975 0.80789 0.96857 1.03354 1.19747 0.83920 0.89388 0.85620 1.90503 1.51924 1.48584 1.57300 1.41789 1.04899 1.09037 1.62647 1.19686 0.91923 0.83541 1.48330 0.87710 1.25330 0.95494 1.00124 0.96793 1.69607 1.02006 1.32615 1.49275 0.85863 0.77269 0.81616 0.79156 1.19780 1.20867 1.19775 1.67739 1.08242 1.30525 1.11274 1.22695 0.89536 0.97612 0.95637 0.90782 0.91292 0.91018 0.84640 0.84206 0.83799 0.84088 0.74821 0.89698 0.89689 0.77018 0.91546 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.03 36.01 0.36 -0.11 16 2 C -0.14 -1.01 5.91 -104.34 -0.62 -1.63 16 3 C -0.08 -0.56 9.84 -39.33 -0.39 -0.95 16 4 C -0.15 -1.25 9.84 -38.98 -0.38 -1.64 16 5 C 0.14 1.57 6.70 -83.13 -0.56 1.02 16 6 C -0.05 -0.62 9.44 -37.13 -0.35 -0.97 16 7 C -0.15 -2.01 9.55 -37.45 -0.36 -2.37 16 8 C 0.54 8.90 7.75 -12.86 -0.10 8.80 16 9 O -0.55 -10.52 16.23 5.22 0.08 -10.44 16 10 N -0.70 -12.11 5.52 -62.82 -0.35 -12.46 16 11 C 0.11 2.04 6.15 -5.20 -0.03 2.00 16 12 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 13 O -0.60 -15.50 15.24 5.54 0.08 -15.42 16 14 N -0.55 -13.76 5.29 -10.96 -0.06 -13.82 16 15 C -0.31 -8.37 9.68 -14.93 -0.14 -8.52 16 16 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 18 N -0.89 -24.03 13.05 55.50 0.72 -23.30 16 19 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 N -0.47 -5.45 9.33 -9.90 -0.09 -5.54 16 24 C 0.10 0.94 10.85 -17.57 -0.19 0.75 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 27 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 28 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.14 1.63 7.52 -52.49 -0.39 1.23 16 31 H 0.14 1.80 7.41 -52.49 -0.39 1.41 16 32 H 0.41 7.06 7.42 -40.82 -0.30 6.76 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -32.72 335.14 -6.81 -39.54 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -4.30 Total: 13.90 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -2.94 Total: 6.83 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.23 Total: -55.12 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.17 Total: -25.85 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.72 -6.81 -39.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492924198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.862 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds