Wall clock time and date at job start Tue Mar 31 2020 02:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38470 * 120.48211 * 2 1 4 4 C 1.38694 * 118.52580 * 180.24944 * 3 2 1 5 5 C 1.38543 * 119.41483 * 359.75007 * 4 3 2 6 6 N 1.31541 * 120.92891 * 359.97438 * 5 4 3 7 7 C 1.32955 * 121.60267 * 0.02562 * 6 5 4 8 8 C 1.47386 * 119.75428 * 179.97438 * 7 6 5 9 9 C 1.34645 * 120.00275 * 317.27031 * 8 7 6 10 10 C 1.46657 * 119.99936 * 350.78698 * 9 8 7 11 11 O 1.21670 * 120.00117 * 353.85819 * 10 9 8 12 12 N 1.34773 * 120.00131 * 173.86031 * 10 9 8 13 13 C 1.46500 * 120.00069 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47143 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99850 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00238 * 179.97438 * 14 13 12 17 17 C 1.37096 * 120.00199 * 179.97438 * 16 14 13 18 18 H 1.07994 * 119.99908 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99880 * 180.02562 * 17 16 14 20 20 N 1.31415 * 119.99657 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00315 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47151 * 90.00141 * 21 19 17 23 23 H 1.48501 * 109.47518 * 210.00373 * 21 19 17 24 24 H 1.48503 * 109.46991 * 330.00256 * 21 19 17 25 25 H 1.09004 * 109.46575 * 270.26510 * 1 2 3 26 26 H 1.08996 * 109.47219 * 30.27005 * 1 2 3 27 27 H 1.09002 * 109.47080 * 150.27646 * 1 2 3 28 28 H 1.08000 * 120.73747 * 359.97438 * 3 2 1 29 29 H 1.08007 * 120.29803 * 179.72797 * 4 3 2 30 30 H 1.07996 * 119.53942 * 180.02562 * 5 4 3 31 31 H 1.08001 * 119.99557 * 137.27007 * 8 7 6 32 32 H 1.08000 * 120.00198 * 170.78602 * 9 8 7 33 33 H 0.97006 * 120.00150 * 359.97438 * 12 10 9 34 34 H 1.08996 * 109.47629 * 299.99585 * 13 12 10 35 35 H 1.09001 * 109.47226 * 60.00145 * 13 12 10 36 36 H 0.97003 * 120.00005 * 0.02562 * 16 14 13 37 37 H 0.97003 * 119.99760 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1933 0.0000 4 6 3.5955 1.1460 -0.0053 5 6 4.2344 -0.0834 -0.0052 6 7 3.5449 -1.2036 0.0005 7 6 2.2153 -1.2034 0.0057 8 6 1.4837 -2.4828 0.0113 9 6 1.8899 -3.4941 -0.7794 10 6 2.9278 -3.2638 -1.7896 11 8 3.3421 -2.1375 -1.9903 12 7 3.4227 -4.2996 -2.4956 13 6 4.4591 -4.0694 -3.5052 14 6 4.8370 -5.3804 -4.1451 15 8 4.2937 -6.4061 -3.7929 16 7 5.7779 -5.4131 -5.1095 17 6 6.1221 -6.6058 -5.6913 18 1 5.6390 -7.5191 -5.3771 19 6 7.0926 -6.6395 -6.6852 20 7 7.4221 -7.7828 -7.2432 21 14 7.9288 -5.0599 -7.2281 22 1 9.1397 -4.8308 -6.3996 23 1 8.3202 -5.1724 -8.6562 24 1 6.9913 -3.9205 -7.0601 25 1 -0.3632 0.0048 1.0277 26 1 -0.3633 0.8875 -0.5180 27 1 -0.3633 -0.8925 -0.5095 28 1 1.6894 2.1399 -0.0004 29 1 4.1719 2.0594 -0.0099 30 1 5.3136 -0.1226 -0.0089 31 1 0.6217 -2.6090 0.6496 32 1 1.4514 -4.4750 -0.6696 33 1 3.0927 -5.1976 -2.3354 34 1 4.0793 -3.3889 -4.2672 35 1 5.3370 -3.6305 -3.0311 36 1 6.2122 -4.5928 -5.3914 37 1 8.0999 -7.8064 -7.9368 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492928485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:47 Heat of formation + Delta-G solvation = -26.234766 kcal Electronic energy + Delta-G solvation = -21736.934828 eV Core-core repulsion = 18286.412378 eV Total energy + Delta-G solvation = -3450.522450 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.36402 -40.70489 -39.77631 -36.31202 -35.37965 -34.96742 -34.25069 -33.85365 -31.71367 -29.57656 -27.97975 -26.57319 -25.13825 -23.03096 -22.64480 -21.48550 -20.86047 -20.22858 -18.74216 -17.61051 -17.47788 -16.96322 -16.82367 -16.68666 -16.33170 -15.77050 -15.47661 -15.25424 -15.10140 -14.73224 -14.43614 -14.12595 -14.03575 -13.88820 -13.64184 -13.61981 -13.25175 -13.21752 -12.97856 -12.47047 -12.24939 -12.02232 -11.60550 -11.19708 -10.84470 -10.67602 -10.35743 -10.34098 -10.15606 -9.93964 -9.30496 -8.47579 -6.09511 -0.26638 0.48000 0.87924 1.28756 1.31852 1.41602 1.76470 2.13398 2.18796 2.41844 2.89546 3.05474 3.08529 3.47031 3.80093 3.91630 4.02593 4.05270 4.17616 4.22614 4.38508 4.40412 4.48584 4.64222 4.77371 4.86101 4.91270 5.07948 5.23207 5.26598 5.32407 5.40476 5.45298 5.49202 5.86248 5.93709 6.46597 6.62586 6.76101 7.23453 7.24535 7.34676 7.75708 8.68995 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027110 B = 0.003193 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.581535 B = 8767.123945 C = 9487.896238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.129 4.129 3 C -0.095 4.095 4 C -0.167 4.167 5 C 0.069 3.931 6 N -0.461 5.461 7 C 0.118 3.882 8 C -0.025 4.025 9 C -0.186 4.186 10 C 0.536 3.464 11 O -0.556 6.556 12 N -0.710 5.710 13 C 0.125 3.875 14 C 0.445 3.555 15 O -0.613 6.613 16 N -0.578 5.578 17 C -0.332 4.332 18 H 0.064 0.936 19 C -0.007 4.007 20 N -0.925 5.925 21 Si 0.959 3.041 22 H -0.256 1.256 23 H -0.271 1.271 24 H -0.235 1.235 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.160 0.840 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.185 0.815 32 H 0.166 0.834 33 H 0.412 0.588 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.391 0.609 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 21.283 15.564 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.131 4.131 3 C -0.120 4.120 4 C -0.186 4.186 5 C -0.090 4.090 6 N -0.169 5.169 7 C -0.017 4.017 8 C -0.045 4.045 9 C -0.208 4.208 10 C 0.325 3.675 11 O -0.436 6.436 12 N -0.364 5.364 13 C -0.003 4.003 14 C 0.233 3.767 15 O -0.499 6.499 16 N -0.218 5.218 17 C -0.461 4.461 18 H 0.082 0.918 19 C -0.207 4.207 20 N -0.565 5.565 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.196 1.196 24 H -0.159 1.159 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.177 0.823 29 H 0.173 0.827 30 H 0.171 0.829 31 H 0.202 0.798 32 H 0.184 0.816 33 H 0.249 0.751 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.227 0.773 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.079 20.453 15.472 28.348 hybrid contribution 0.595 0.453 -0.834 1.120 sum -11.484 20.906 14.638 27.986 Atomic orbital electron populations 1.20824 0.87987 1.03900 1.03850 1.21292 0.98894 0.92927 0.99979 1.21738 0.94152 0.98817 0.97314 1.22477 0.95944 0.99619 1.00608 1.22863 1.00638 0.88288 0.97255 1.67707 1.08362 1.32140 1.08713 1.20186 0.89568 0.93913 0.98062 1.22587 0.96777 0.89165 0.95989 1.23176 0.98608 1.01516 0.97485 1.18994 0.82535 0.83905 0.82027 1.90792 1.61137 1.23520 1.68117 1.45693 1.40256 1.11868 1.38615 1.20741 0.93428 0.93677 0.92504 1.20514 0.82431 0.91092 0.82673 1.90519 1.56785 1.36769 1.65842 1.41940 1.36229 1.08949 1.34721 1.19044 1.21564 0.86720 1.18796 0.91801 1.26055 0.97092 1.01882 0.95684 1.69780 1.32227 1.27759 1.26722 0.85444 0.79731 0.77977 0.78966 1.18074 1.19579 1.15894 0.88896 0.90179 0.90900 0.82254 0.82654 0.82936 0.79804 0.81617 0.75056 0.88503 0.88634 0.77322 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.56 71.24 0.68 -0.53 16 2 C -0.13 -2.47 5.94 -19.47 -0.12 -2.58 16 3 C -0.09 -1.64 9.85 22.43 0.22 -1.42 16 4 C -0.17 -3.20 10.11 22.45 0.23 -2.97 16 5 C 0.07 1.74 11.14 84.81 0.95 2.69 16 6 N -0.46 -13.67 7.19 -185.24 -1.33 -15.00 16 7 C 0.12 2.90 5.19 41.72 0.22 3.12 16 8 C -0.03 -0.49 8.48 23.86 0.20 -0.29 16 9 C -0.19 -4.14 10.03 23.65 0.24 -3.90 16 10 C 0.54 16.70 7.42 86.44 0.64 17.34 16 11 O -0.56 -20.20 12.50 -4.25 -0.05 -20.26 16 12 N -0.71 -23.30 5.52 -470.86 -2.60 -25.90 16 13 C 0.12 4.39 6.15 85.63 0.53 4.92 16 14 C 0.45 20.21 7.85 87.66 0.69 20.90 16 15 O -0.61 -32.51 15.24 -3.07 -0.05 -32.55 16 16 N -0.58 -27.49 5.09 -306.99 -1.56 -29.05 16 17 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 18 H 0.06 4.35 7.39 -2.91 -0.02 4.32 16 19 C -0.01 -0.39 5.50 84.93 0.47 0.08 16 20 N -0.93 -54.94 13.96 21.66 0.30 -54.64 16 21 Si 0.96 38.89 27.74 68.60 1.90 40.80 16 22 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.24 -8.26 6.52 99.48 0.65 -7.62 16 25 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.08 0.72 8.10 -2.39 -0.02 0.70 16 27 H 0.07 0.79 7.05 -2.39 -0.02 0.78 16 28 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 29 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 30 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 31 H 0.18 1.80 7.87 -2.91 -0.02 1.77 16 32 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 33 H 0.41 13.38 7.42 -92.70 -0.69 12.70 16 34 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 36 H 0.39 15.75 5.76 -92.71 -0.53 15.21 16 37 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -80.34 323.91 2.24 -78.10 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: -0.16 Total: 39.53 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: 5.79 Total: 18.97 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -5.19 Total: -124.59 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.10 Total: -52.81 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.90 Total: 40.80 kcal Total: -80.34 2.24 -78.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492928485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.869 kcal (2) G-P(sol) polarization free energy of solvation -80.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds