Wall clock time and date at job start Tue Mar 31 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38481 * 120.47936 * 2 1 4 4 C 1.38694 * 118.52243 * 179.97438 * 3 2 1 5 5 C 1.38546 * 119.41457 * 0.02562 * 4 3 2 6 6 N 1.31538 * 120.93400 * 359.71616 * 5 4 3 7 7 C 1.32962 * 121.59762 * 0.57333 * 6 5 4 8 8 C 1.47380 * 119.75474 * 179.70719 * 7 6 5 9 9 C 1.34653 * 120.00093 * 359.72782 * 8 7 6 10 10 C 1.46655 * 120.00350 * 180.02562 * 9 8 7 11 11 O 1.21673 * 119.99829 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00110 * 179.72515 * 10 9 8 13 13 C 1.46504 * 119.99854 * 180.27595 * 12 10 9 14 14 C 1.50701 * 109.46923 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99900 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99977 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99931 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00191 * 359.97438 * 17 16 14 19 19 C 1.38947 * 119.99788 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00029 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99903 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47041 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46896 * 119.99697 * 21 19 17 24 24 H 1.48496 * 109.47151 * 239.99653 * 21 19 17 25 25 H 1.09004 * 109.47108 * 270.01882 * 1 2 3 26 26 H 1.08997 * 109.47281 * 30.02044 * 1 2 3 27 27 H 1.09004 * 109.46669 * 150.02140 * 1 2 3 28 28 H 1.08003 * 120.73394 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.29029 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.53093 * 179.97438 * 5 4 3 31 31 H 1.08002 * 120.00372 * 179.72384 * 8 7 6 32 32 H 1.08002 * 119.99535 * 359.97438 * 9 8 7 33 33 H 0.97000 * 119.99736 * 0.26869 * 12 10 9 34 34 H 1.08998 * 109.46968 * 299.99782 * 13 12 10 35 35 H 1.08997 * 109.47198 * 59.99605 * 13 12 10 36 36 H 0.97003 * 119.99587 * 0.02562 * 16 14 13 37 37 H 0.97000 * 119.99613 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1934 0.0000 4 6 3.5955 1.1461 0.0005 5 6 4.2344 -0.0833 0.0005 6 7 3.5450 -1.2035 0.0056 7 6 2.2154 -1.2033 -0.0004 8 6 1.4837 -2.4827 -0.0009 9 6 2.1618 -3.6461 -0.0008 10 6 1.4338 -4.9192 -0.0019 11 8 0.2171 -4.9242 -0.0024 12 7 2.1125 -6.0836 -0.0074 13 6 1.3852 -7.3553 -0.0146 14 6 2.3693 -8.4967 -0.0204 15 8 3.5608 -8.2701 -0.0182 16 7 1.9253 -9.7692 -0.0269 17 6 2.8205 -10.8075 -0.0317 18 1 3.8815 -10.6058 -0.0306 19 6 2.3628 -12.1194 -0.0389 20 7 1.0718 -12.3648 -0.0408 21 14 3.5826 -13.5342 -0.0461 22 1 4.9661 -12.9949 -0.0433 23 1 3.3751 -14.3726 1.1618 24 1 3.3760 -14.3596 -1.2631 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6893 2.1400 0.0004 29 1 4.1718 2.0595 0.0010 30 1 5.3137 -0.1224 0.0005 31 1 0.4037 -2.4872 -0.0013 32 1 3.2418 -3.6415 -0.0008 33 1 3.0825 -6.0795 -0.0067 34 1 0.7582 -7.4202 0.8746 35 1 0.7595 -7.4110 -0.9053 36 1 0.9723 -9.9503 -0.0283 37 1 0.7523 -13.2807 -0.0455 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492928486.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:50 Heat of formation + Delta-G solvation = -51.784024 kcal Electronic energy + Delta-G solvation = -20841.067874 eV Core-core repulsion = 17389.437525 eV Total energy + Delta-G solvation = -3451.630349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31285 -40.90653 -39.88628 -36.28732 -35.41198 -35.16816 -34.57166 -33.39112 -31.81162 -29.50839 -28.14083 -26.72111 -25.43086 -23.24923 -22.37126 -21.42043 -20.72319 -20.02473 -18.89750 -17.71042 -17.56862 -17.07743 -16.74330 -16.67432 -16.31615 -15.81710 -15.69937 -15.52691 -15.28118 -15.04271 -14.27887 -14.00105 -13.92119 -13.70575 -13.62437 -13.56808 -13.53735 -13.13668 -12.92208 -12.45660 -12.21178 -12.11576 -11.59183 -11.48460 -11.18882 -10.58586 -10.58335 -10.45391 -10.25157 -10.09827 -9.37987 -8.52106 -6.02346 -0.59734 0.31119 0.85503 1.34516 1.42453 1.56693 1.88452 2.01248 2.20352 2.31567 2.92759 3.09631 3.14916 3.21759 3.61853 3.90156 3.93057 4.05343 4.09447 4.20286 4.25223 4.41525 4.42033 4.57473 4.68179 4.77702 4.81788 4.99658 5.14079 5.20265 5.25414 5.34409 5.37831 5.38871 5.76769 5.90784 6.43612 6.49978 6.97638 7.02385 7.08973 7.42659 7.93177 8.65060 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.041069 B = 0.002338 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.611691 B =11974.586956 C =12635.723999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.115 4.115 3 C -0.083 4.083 4 C -0.153 4.153 5 C 0.078 3.922 6 N -0.499 5.499 7 C 0.107 3.893 8 C -0.027 4.027 9 C -0.175 4.175 10 C 0.545 3.455 11 O -0.581 6.581 12 N -0.701 5.701 13 C 0.120 3.880 14 C 0.432 3.568 15 O -0.624 6.624 16 N -0.559 5.559 17 C -0.337 4.337 18 H 0.086 0.914 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.271 1.271 23 H -0.270 1.270 24 H -0.270 1.270 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.169 0.831 29 H 0.170 0.830 30 H 0.178 0.822 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.414 0.586 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.399 0.601 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.136 27.420 0.085 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.117 4.117 3 C -0.109 4.109 4 C -0.172 4.172 5 C -0.081 4.081 6 N -0.208 5.208 7 C -0.027 4.027 8 C -0.047 4.047 9 C -0.197 4.197 10 C 0.335 3.665 11 O -0.463 6.463 12 N -0.354 5.354 13 C -0.007 4.007 14 C 0.219 3.781 15 O -0.513 6.513 16 N -0.194 5.194 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.212 4.212 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.196 1.196 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.186 0.814 29 H 0.188 0.812 30 H 0.195 0.805 31 H 0.167 0.833 32 H 0.162 0.838 33 H 0.253 0.747 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.234 0.766 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.131 26.524 0.090 26.524 hybrid contribution 0.102 -0.461 0.002 0.472 sum 0.233 26.063 0.092 26.064 Atomic orbital electron populations 1.20932 0.88520 1.04366 1.03799 1.21279 0.98769 0.92946 0.98693 1.21901 0.94496 0.98614 0.95849 1.22692 0.95568 1.00254 0.98673 1.23252 1.01519 0.87603 0.95746 1.67649 1.07878 1.33267 1.12047 1.19915 0.89612 0.92979 1.00225 1.22360 1.00064 0.89630 0.92663 1.22920 1.01508 0.90731 1.04552 1.18741 0.87056 0.84767 0.75948 1.90757 1.14656 1.88409 1.52477 1.45643 1.11705 1.04409 1.73644 1.20819 0.93417 0.82013 1.04478 1.20422 0.89461 0.84610 0.83602 1.90478 1.18244 1.84524 1.58007 1.41847 1.09916 1.04289 1.63398 1.19772 0.91003 0.85488 1.50342 0.89642 1.26148 0.98568 1.00722 0.95772 1.69687 1.13916 1.22677 1.49295 0.84797 0.77726 0.77011 0.78353 1.19496 1.19554 1.19564 0.89647 0.88855 0.91193 0.81367 0.81210 0.80543 0.83258 0.83806 0.74732 0.88491 0.88496 0.76632 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.54 71.24 0.68 -0.68 16 2 C -0.11 -1.83 5.94 -19.47 -0.12 -1.94 16 3 C -0.08 -0.92 9.85 22.44 0.22 -0.70 16 4 C -0.15 -1.62 10.11 22.45 0.23 -1.40 16 5 C 0.08 1.24 11.18 84.81 0.95 2.19 16 6 N -0.50 -11.45 9.33 -185.24 -1.73 -13.18 16 7 C 0.11 2.35 6.70 41.72 0.28 2.63 16 8 C -0.03 -0.66 8.89 23.86 0.21 -0.45 16 9 C -0.17 -4.87 9.55 23.65 0.23 -4.64 16 10 C 0.54 18.25 7.75 86.44 0.67 18.92 16 11 O -0.58 -22.08 16.23 -4.26 -0.07 -22.15 16 12 N -0.70 -24.68 5.52 -470.86 -2.60 -27.28 16 13 C 0.12 4.56 6.15 85.63 0.53 5.08 16 14 C 0.43 20.48 7.85 87.66 0.69 21.17 16 15 O -0.62 -33.24 15.24 -3.05 -0.05 -33.29 16 16 N -0.56 -28.58 5.29 -306.99 -1.62 -30.20 16 17 C -0.34 -18.83 9.68 84.04 0.81 -18.01 16 18 H 0.09 5.05 7.16 -2.91 -0.02 5.02 16 19 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 20 N -0.92 -49.05 13.05 21.66 0.28 -48.76 16 21 Si 1.00 42.23 29.55 68.60 2.03 44.26 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.09 0.64 8.10 -2.39 -0.02 0.63 16 27 H 0.07 0.92 6.33 -2.38 -0.02 0.91 16 28 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 29 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 30 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.15 3.44 5.80 -2.91 -0.02 3.42 16 32 H 0.14 3.87 7.41 -2.91 -0.02 3.85 16 33 H 0.41 14.55 7.42 -92.71 -0.69 13.86 16 34 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 35 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 36 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 37 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -71.12 331.25 1.79 -69.32 By element: Atomic # 1 Polarization: 39.54 SS G_CDS: -0.29 Total: 39.25 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 5.84 Total: 22.04 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -5.67 Total: -119.43 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -0.12 Total: -55.44 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -71.12 1.79 -69.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492928486.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.540 kcal (2) G-P(sol) polarization free energy of solvation -71.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds