Wall clock time and date at job start Tue Mar 31 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38392 * 119.43450 * 2 1 4 4 C 1.38278 * 119.33361 * 179.67676 * 3 2 1 5 5 C 1.40267 * 118.26913 * 0.55714 * 4 3 2 6 6 C 1.47210 * 120.58659 * 179.73549 * 5 4 3 7 7 C 1.34798 * 120.00156 * 316.29552 * 6 5 4 8 8 C 1.46430 * 120.00264 * 349.08912 * 7 6 5 9 9 O 1.21700 * 119.99457 * 353.22458 * 8 7 6 10 10 N 1.34771 * 120.00485 * 172.94574 * 8 7 6 11 11 C 1.46491 * 120.00264 * 180.27343 * 10 8 7 12 12 C 1.50697 * 109.47480 * 180.02562 * 11 10 8 13 13 O 1.21300 * 119.99746 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00652 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00339 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99904 * 359.97438 * 15 14 12 17 17 C 1.38957 * 120.00062 * 179.97438 * 15 14 12 18 18 N 1.31410 * 119.99866 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00081 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47129 * 59.99707 * 19 17 15 21 21 H 1.48497 * 109.47195 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47115 * 299.99914 * 19 17 15 23 23 C 1.39794 * 118.82681 * 359.46403 * 5 4 3 24 24 N 1.31661 * 120.52811 * 0.24908 * 23 5 4 25 25 H 1.09002 * 109.47537 * 270.02939 * 1 2 3 26 26 H 1.09001 * 109.47018 * 30.02513 * 1 2 3 27 27 H 1.09002 * 109.47351 * 150.02508 * 1 2 3 28 28 H 1.08010 * 120.32903 * 359.96868 * 3 2 1 29 29 H 1.08000 * 120.86615 * 180.31846 * 4 3 2 30 30 H 1.08003 * 119.99803 * 136.29076 * 6 5 4 31 31 H 1.08003 * 120.00282 * 169.08451 * 7 6 5 32 32 H 0.97004 * 119.99626 * 0.27914 * 10 8 7 33 33 H 1.09000 * 109.47463 * 300.00567 * 11 10 8 34 34 H 1.09003 * 109.47416 * 60.00409 * 11 10 8 35 35 H 0.97009 * 119.99417 * 359.97438 * 14 12 11 36 36 H 0.96993 * 120.00091 * 180.02562 * 18 17 15 37 37 H 1.08004 * 119.73929 * 180.27674 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.2053 0.0000 4 6 3.5699 1.2029 0.0068 5 6 4.2321 -0.0337 0.0015 6 6 5.7029 -0.0957 0.0024 7 6 6.4126 0.7228 -0.7996 8 6 5.7332 1.4998 -1.8384 9 8 4.5507 1.3161 -2.0601 10 7 6.4159 2.4223 -2.5450 11 6 5.7348 3.2038 -3.5800 12 6 6.7139 4.1566 -4.2160 13 8 7.8675 4.1802 -3.8417 14 7 6.3079 4.9826 -5.2006 15 6 7.1985 5.8498 -5.7787 16 1 8.2255 5.8713 -5.4449 17 6 6.7801 6.7010 -6.7942 18 7 5.5305 6.6751 -7.2000 19 14 7.9937 7.8820 -7.5824 20 1 9.1065 7.1126 -8.1949 21 1 7.3031 8.6746 -8.6312 22 1 8.5364 8.7981 -6.5473 23 6 3.4706 -1.2060 0.0010 24 7 2.1553 -1.1492 0.0006 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.6432 2.1384 -0.0005 29 1 4.1256 2.1289 0.0121 30 1 6.2133 -0.7971 0.6459 31 1 7.4823 0.8057 -0.6761 32 1 7.3584 2.5686 -2.3682 33 1 5.3367 2.5314 -4.3400 34 1 4.9178 3.7682 -3.1305 35 1 5.3854 4.9634 -5.5001 36 1 5.2384 7.2689 -7.9091 37 1 3.9653 -2.1661 0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493752896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:04 Heat of formation + Delta-G solvation = -17.854979 kcal Electronic energy + Delta-G solvation = -21522.658342 eV Core-core repulsion = 18072.499266 eV Total energy + Delta-G solvation = -3450.159076 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.44633 -39.39894 -38.17873 -34.94618 -34.28870 -33.67287 -32.28336 -31.53590 -31.34955 -28.34779 -27.11116 -24.74495 -23.45194 -23.14664 -21.46232 -19.83317 -19.26180 -18.11049 -17.56031 -16.60093 -16.15636 -15.73419 -15.52597 -15.15982 -14.93886 -14.49186 -14.37264 -13.92718 -13.87762 -13.83481 -13.25516 -13.10562 -12.73869 -12.43942 -12.28767 -12.23221 -11.97162 -11.70784 -11.65427 -11.13523 -10.54291 -10.52864 -10.34507 -9.89773 -9.66547 -9.38286 -9.28258 -8.75800 -8.68232 -8.31264 -8.14315 -6.55139 -3.97434 0.54733 1.36677 1.76986 3.10791 3.19000 3.21763 3.35053 3.40719 3.69955 3.84269 4.08441 4.27748 4.62539 4.72601 4.82518 4.85385 4.93957 5.11307 5.13189 5.21476 5.46132 5.48936 5.52314 5.68436 5.79650 5.88463 5.90313 5.97204 6.01278 6.03691 6.21134 6.36806 6.61575 6.74654 7.42192 7.76495 7.87622 8.02080 8.37893 8.42251 9.00527 9.34804 9.82567 10.61630 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027307 B = 0.002914 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.130635 B = 9605.797714 C =10437.919334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.131 3.869 3 C -0.182 4.182 4 C 0.010 3.990 5 C -0.126 4.126 6 C -0.028 4.028 7 C -0.199 4.199 8 C 0.533 3.467 9 O -0.542 6.542 10 N -0.699 5.699 11 C 0.109 3.891 12 C 0.426 3.574 13 O -0.598 6.598 14 N -0.548 5.548 15 C -0.307 4.307 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.117 3.883 24 N -0.497 5.497 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.411 0.589 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.142 -11.589 14.352 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.006 4.006 3 C -0.202 4.202 4 C -0.015 4.015 5 C -0.128 4.128 6 C -0.048 4.048 7 C -0.220 4.220 8 C 0.322 3.678 9 O -0.422 6.422 10 N -0.351 5.351 11 C -0.019 4.019 12 C 0.212 3.788 13 O -0.485 6.485 14 N -0.182 5.182 15 C -0.436 4.436 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.761 3.239 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.040 4.040 24 N -0.207 5.207 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.157 0.843 31 H 0.155 0.845 32 H 0.250 0.750 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.790 -12.298 14.226 19.676 hybrid contribution 1.127 1.565 -0.788 2.083 sum -4.663 -10.733 13.437 17.819 Atomic orbital electron populations 1.20706 0.89224 1.03405 1.02714 1.21270 0.96771 0.88431 0.94143 1.21739 0.94762 0.99030 1.04656 1.21485 0.93996 0.96998 0.89064 1.19824 0.93878 0.94661 1.04452 1.22208 0.91842 0.95134 0.95619 1.23057 1.00926 1.00282 0.97758 1.18457 0.86816 0.79963 0.82591 1.90859 1.15194 1.67506 1.68614 1.45724 1.15092 1.37457 1.36863 1.20944 0.95208 0.94425 0.91283 1.19738 0.89029 0.85420 0.84598 1.90498 1.19398 1.72634 1.65962 1.41794 1.12938 1.32534 1.30975 1.19686 0.94268 1.13955 1.15704 0.87709 1.25333 0.96852 0.98455 0.97014 1.69602 1.15502 1.39016 1.29313 0.85865 0.79696 0.79711 0.78663 1.19740 1.20815 1.19749 1.22758 0.89143 0.97161 0.94903 1.67387 1.09854 1.29101 1.14343 0.90659 0.90768 0.90648 0.85151 0.85731 0.84331 0.84538 0.75047 0.89845 0.89870 0.77037 0.91482 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.16 36.01 0.37 -0.59 16 2 C 0.13 1.66 6.78 -82.49 -0.56 1.10 16 3 C -0.18 -2.28 9.72 -39.51 -0.38 -2.66 16 4 C 0.01 0.14 6.72 -38.80 -0.26 -0.13 16 5 C -0.13 -1.55 4.55 -104.91 -0.48 -2.02 16 6 C -0.03 -0.27 9.84 -37.16 -0.37 -0.64 16 7 C -0.20 -2.17 9.94 -37.51 -0.37 -2.55 16 8 C 0.53 7.92 6.82 -12.97 -0.09 7.84 16 9 O -0.54 -9.39 12.13 5.19 0.06 -9.33 16 10 N -0.70 -11.15 5.52 -62.89 -0.35 -11.50 16 11 C 0.11 1.97 6.15 -5.20 -0.03 1.93 16 12 C 0.43 9.64 7.85 -10.99 -0.09 9.55 16 13 O -0.60 -15.09 15.24 5.54 0.08 -15.00 16 14 N -0.55 -13.46 5.29 -10.96 -0.06 -13.52 16 15 C -0.31 -8.27 9.68 -14.93 -0.14 -8.42 16 16 H 0.11 2.93 7.16 -52.48 -0.38 2.56 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 18 N -0.89 -23.72 13.05 55.50 0.72 -23.00 16 19 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 C 0.12 1.43 10.96 -17.04 -0.19 1.25 16 24 N -0.50 -6.77 10.25 -9.06 -0.09 -6.86 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 29 H 0.12 1.62 7.10 -52.49 -0.37 1.25 16 30 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 31 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 32 H 0.41 6.43 7.42 -40.82 -0.30 6.13 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.40 9.36 7.90 -40.82 -0.32 9.04 16 36 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 37 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 327.79 15.07 4.94 4.94 Total: -1.00 -32.29 327.79 -6.71 -39.00 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -4.31 Total: 14.66 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -2.69 Total: 5.26 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.23 Total: -54.87 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: 0.15 Total: -24.33 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.29 -6.71 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493752896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.141 kcal (2) G-P(sol) polarization free energy of solvation -32.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds