Wall clock time and date at job start Tue Mar 31 2020 02:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38392 * 119.43450 * 2 1 4 4 C 1.38278 * 119.33361 * 179.67676 * 3 2 1 5 5 C 1.40267 * 118.26913 * 0.55714 * 4 3 2 6 6 C 1.47210 * 120.58659 * 179.73549 * 5 4 3 7 7 C 1.34798 * 120.00156 * 316.29552 * 6 5 4 8 8 C 1.46430 * 120.00264 * 349.08912 * 7 6 5 9 9 O 1.21700 * 119.99457 * 353.22458 * 8 7 6 10 10 N 1.34771 * 120.00485 * 172.94574 * 8 7 6 11 11 C 1.46491 * 120.00264 * 180.27343 * 10 8 7 12 12 C 1.50697 * 109.47480 * 180.02562 * 11 10 8 13 13 O 1.21300 * 119.99746 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00652 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00339 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99904 * 359.97438 * 15 14 12 17 17 C 1.38957 * 120.00062 * 179.97438 * 15 14 12 18 18 N 1.31410 * 119.99866 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00081 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47129 * 59.99707 * 19 17 15 21 21 H 1.48497 * 109.47195 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47115 * 299.99914 * 19 17 15 23 23 C 1.39794 * 118.82681 * 359.46403 * 5 4 3 24 24 N 1.31661 * 120.52811 * 0.24908 * 23 5 4 25 25 H 1.09002 * 109.47537 * 270.02939 * 1 2 3 26 26 H 1.09001 * 109.47018 * 30.02513 * 1 2 3 27 27 H 1.09002 * 109.47351 * 150.02508 * 1 2 3 28 28 H 1.08010 * 120.32903 * 359.96868 * 3 2 1 29 29 H 1.08000 * 120.86615 * 180.31846 * 4 3 2 30 30 H 1.08003 * 119.99803 * 136.29076 * 6 5 4 31 31 H 1.08003 * 120.00282 * 169.08451 * 7 6 5 32 32 H 0.97004 * 119.99626 * 0.27914 * 10 8 7 33 33 H 1.09000 * 109.47463 * 300.00567 * 11 10 8 34 34 H 1.09003 * 109.47416 * 60.00409 * 11 10 8 35 35 H 0.97009 * 119.99417 * 359.97438 * 14 12 11 36 36 H 0.96993 * 120.00091 * 180.02562 * 18 17 15 37 37 H 1.08004 * 119.73929 * 180.27674 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.2053 0.0000 4 6 3.5699 1.2029 0.0068 5 6 4.2321 -0.0337 0.0015 6 6 5.7029 -0.0957 0.0024 7 6 6.4126 0.7228 -0.7996 8 6 5.7332 1.4998 -1.8384 9 8 4.5507 1.3161 -2.0601 10 7 6.4159 2.4223 -2.5450 11 6 5.7348 3.2038 -3.5800 12 6 6.7139 4.1566 -4.2160 13 8 7.8675 4.1802 -3.8417 14 7 6.3079 4.9826 -5.2006 15 6 7.1985 5.8498 -5.7787 16 1 8.2255 5.8713 -5.4449 17 6 6.7801 6.7010 -6.7942 18 7 5.5305 6.6751 -7.2000 19 14 7.9937 7.8820 -7.5824 20 1 9.1065 7.1126 -8.1949 21 1 7.3031 8.6746 -8.6312 22 1 8.5364 8.7981 -6.5473 23 6 3.4706 -1.2060 0.0010 24 7 2.1553 -1.1492 0.0006 25 1 -0.3634 0.0005 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.6432 2.1384 -0.0005 29 1 4.1256 2.1289 0.0121 30 1 6.2133 -0.7971 0.6459 31 1 7.4823 0.8057 -0.6761 32 1 7.3584 2.5686 -2.3682 33 1 5.3367 2.5314 -4.3400 34 1 4.9178 3.7682 -3.1305 35 1 5.3854 4.9634 -5.5001 36 1 5.2384 7.2689 -7.9091 37 1 3.9653 -2.1661 0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493752896.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:03 Heat of formation + Delta-G solvation = -40.943145 kcal Electronic energy + Delta-G solvation = -21523.659520 eV Core-core repulsion = 18072.499266 eV Total energy + Delta-G solvation = -3451.160254 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.46920 -40.66982 -39.82919 -36.34947 -35.72046 -35.05866 -33.40495 -33.19048 -32.34774 -29.67538 -28.19215 -26.52622 -24.38547 -24.17809 -22.51386 -21.40378 -20.60063 -19.99808 -18.67827 -17.56541 -17.47590 -17.04181 -16.93487 -16.58307 -16.39363 -15.91379 -15.51782 -15.37933 -15.27881 -14.81182 -14.38355 -14.07450 -13.96411 -13.65705 -13.55243 -13.49036 -13.21391 -13.01007 -12.90858 -12.58665 -12.49028 -12.14878 -11.58092 -11.47625 -10.91383 -10.58598 -10.41273 -10.24442 -10.13130 -9.99379 -9.22334 -8.52950 -6.03510 -0.34718 0.42443 0.85730 1.36684 1.41659 1.52597 1.88077 2.09537 2.29801 2.33651 2.92594 3.11613 3.14222 3.45969 3.78231 3.85908 3.93252 4.02485 4.18634 4.23959 4.39964 4.40645 4.45164 4.70528 4.73085 4.79500 4.83690 5.07317 5.13394 5.21561 5.28519 5.31172 5.36497 5.51666 5.85737 5.89611 6.44502 6.57578 7.01206 7.09696 7.20574 7.42076 7.91758 8.63749 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.027307 B = 0.002914 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.130635 B = 9605.797714 C =10437.919334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.117 3.883 3 C -0.195 4.195 4 C -0.006 4.006 5 C -0.139 4.139 6 C -0.006 4.006 7 C -0.212 4.212 8 C 0.531 3.469 9 O -0.570 6.570 10 N -0.702 5.702 11 C 0.124 3.876 12 C 0.432 3.568 13 O -0.624 6.624 14 N -0.560 5.560 15 C -0.339 4.339 16 H 0.087 0.913 17 C -0.010 4.010 18 N -0.917 5.917 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.269 1.269 23 C 0.108 3.892 24 N -0.519 5.519 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.184 0.816 31 H 0.167 0.833 32 H 0.414 0.586 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.398 0.602 36 H 0.280 0.720 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.754 -12.309 15.111 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.020 4.020 3 C -0.215 4.215 4 C -0.032 4.032 5 C -0.141 4.141 6 C -0.026 4.026 7 C -0.232 4.232 8 C 0.322 3.678 9 O -0.452 6.452 10 N -0.355 5.355 11 C -0.004 4.004 12 C 0.219 3.781 13 O -0.512 6.512 14 N -0.195 5.195 15 C -0.468 4.468 16 H 0.105 0.895 17 C -0.211 4.211 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.194 1.194 23 C -0.048 4.048 24 N -0.230 5.230 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.201 0.799 31 H 0.185 0.815 32 H 0.252 0.748 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.413 -13.034 15.002 20.597 hybrid contribution 0.943 1.717 -0.950 2.177 sum -4.470 -11.317 14.052 18.588 Atomic orbital electron populations 1.20769 0.87236 1.03866 1.03902 1.21767 0.98313 0.88242 0.93720 1.21983 0.94942 0.99793 1.04773 1.21616 0.94486 0.97368 0.89736 1.20140 0.95465 0.94322 1.04207 1.22624 0.90469 0.94533 0.94967 1.23106 1.02292 1.00404 0.97442 1.19137 0.86529 0.79367 0.82766 1.90854 1.16526 1.68287 1.69526 1.45751 1.15168 1.37862 1.36749 1.20705 0.94078 0.93746 0.91891 1.20446 0.89312 0.84896 0.83456 1.90473 1.20942 1.73306 1.66486 1.41855 1.12814 1.33054 1.31763 1.19713 0.94120 1.15773 1.17220 0.89524 1.26139 0.98576 0.99467 0.96905 1.69671 1.16721 1.39616 1.29636 0.84928 0.77595 0.77611 0.77878 1.19455 1.19623 1.19404 1.23249 0.88997 0.98343 0.94222 1.67445 1.10720 1.29659 1.15135 0.89027 0.89610 0.90829 0.83895 0.86339 0.79907 0.81544 0.74797 0.89323 0.88945 0.76774 0.91030 0.80408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 10.16 71.24 0.72 -1.03 16 2 C 0.12 2.87 6.78 42.58 0.29 3.16 16 3 C -0.20 -4.82 9.72 22.32 0.22 -4.61 16 4 C -0.01 -0.16 6.72 22.77 0.15 -0.01 16 5 C -0.14 -3.19 4.55 -20.05 -0.09 -3.28 16 6 C -0.01 -0.10 9.84 23.84 0.23 0.13 16 7 C -0.21 -4.09 9.94 23.61 0.23 -3.86 16 8 C 0.53 15.19 6.82 86.38 0.59 15.78 16 9 O -0.57 -19.45 12.13 -4.35 -0.05 -19.50 16 10 N -0.70 -21.92 5.52 -471.10 -2.60 -24.53 16 11 C 0.12 4.44 6.15 85.63 0.53 4.97 16 12 C 0.43 19.71 7.85 87.66 0.69 20.40 16 13 O -0.62 -31.81 15.24 -3.09 -0.05 -31.85 16 14 N -0.56 -27.98 5.29 -306.97 -1.62 -29.60 16 15 C -0.34 -18.59 9.68 84.04 0.81 -17.77 16 16 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 17 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 18 N -0.92 -48.58 13.05 21.67 0.28 -48.30 16 19 Si 1.00 41.46 29.55 68.60 2.03 43.48 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 C 0.11 2.48 10.96 85.10 0.93 3.41 16 24 N -0.52 -13.66 10.25 -182.58 -1.87 -15.54 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 29 H 0.12 3.09 7.10 -2.91 -0.02 3.07 16 30 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.41 12.63 7.42 -92.71 -0.69 11.95 16 33 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.40 19.20 7.90 -92.70 -0.73 18.47 16 36 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 37 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -69.92 327.79 1.59 -68.33 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -0.30 Total: 40.28 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 5.78 Total: 17.23 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -5.81 Total: -117.96 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -0.10 Total: -51.36 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -69.92 1.59 -68.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493752896.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.389 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds