Wall clock time and date at job start Tue Mar 31 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 119.42945 * 2 1 4 4 C 1.38291 * 119.33522 * 180.02562 * 3 2 1 5 5 C 1.40266 * 118.26355 * 359.97438 * 4 3 2 6 6 C 1.47213 * 120.58469 * 179.97438 * 5 4 3 7 7 C 1.34810 * 119.99774 * 180.02562 * 6 5 4 8 8 C 1.46427 * 119.99825 * 179.97438 * 7 6 5 9 9 O 1.21697 * 119.99541 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00333 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00553 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47399 * 180.02562 * 11 10 8 13 13 O 1.21290 * 120.00130 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99906 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00039 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00155 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00207 * 180.02562 * 15 14 12 18 18 N 1.31410 * 120.00145 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00090 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47391 * 59.99620 * 19 17 15 21 21 H 1.48501 * 109.47159 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46868 * 299.99632 * 19 17 15 23 23 C 1.39805 * 118.83258 * 359.97438 * 5 4 3 24 24 N 1.31660 * 120.52390 * 0.02562 * 23 5 4 25 25 H 1.08997 * 109.46856 * 90.00084 * 1 2 3 26 26 H 1.09003 * 109.46945 * 209.99929 * 1 2 3 27 27 H 1.09003 * 109.47042 * 330.00058 * 1 2 3 28 28 H 1.07996 * 120.33749 * 0.02562 * 3 2 1 29 29 H 1.07992 * 120.86959 * 180.02562 * 4 3 2 30 30 H 1.07992 * 119.99772 * 0.02562 * 6 5 4 31 31 H 1.08002 * 120.00442 * 359.97438 * 7 6 5 32 32 H 0.97009 * 119.99433 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47013 * 300.00585 * 11 10 8 34 34 H 1.09008 * 109.46792 * 59.99913 * 11 10 8 35 35 H 0.97001 * 120.00501 * 0.02562 * 14 12 11 36 36 H 0.96999 * 120.00802 * 179.97438 * 18 17 15 37 37 H 1.07996 * 119.73970 * 179.72138 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2053 0.0000 4 6 3.5699 1.2031 -0.0005 5 6 4.2321 -0.0335 -0.0005 6 6 5.7029 -0.0955 -0.0016 7 6 6.3271 -1.2904 -0.0021 8 6 7.7901 -1.3521 -0.0038 9 8 8.4424 -0.3247 -0.0053 10 7 8.4142 -2.5466 -0.0038 11 6 9.8778 -2.6084 -0.0060 12 6 10.3198 -4.0491 -0.0061 13 8 9.4935 -4.9370 -0.0040 14 7 11.6334 -4.3510 -0.0086 15 6 12.0355 -5.6616 -0.0082 16 1 11.2998 -6.4522 -0.0063 17 6 13.3897 -5.9729 -0.0101 18 7 14.2850 -5.0110 -0.0119 19 14 13.9376 -7.7587 -0.0103 20 1 13.4116 -8.4378 -1.2216 21 1 15.4213 -7.8213 -0.0132 22 1 13.4155 -8.4367 1.2034 23 6 3.4707 -1.2060 0.0006 24 7 2.1553 -1.1492 0.0011 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6432 2.1384 0.0004 29 1 4.1255 2.1291 -0.0001 30 1 6.2818 0.8162 -0.0021 31 1 5.7482 -2.2022 -0.0013 32 1 7.8942 -3.3655 -0.0030 33 1 10.2611 -2.1110 -0.8970 34 1 10.2639 -2.1095 0.8830 35 1 12.2943 -3.6409 -0.0099 36 1 15.2304 -5.2282 -0.0129 37 1 3.9654 -2.1660 -0.0039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493752897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:06 Heat of formation + Delta-G solvation = -30.775511 kcal Electronic energy + Delta-G solvation = -20608.287864 eV Core-core repulsion = 17157.568513 eV Total energy + Delta-G solvation = -3450.719352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58500 -39.56372 -38.14350 -35.16196 -34.44992 -33.68326 -32.73855 -31.75764 -31.38050 -28.45956 -27.11359 -24.81118 -24.28290 -23.02276 -21.35398 -19.86444 -19.37658 -18.14552 -17.77834 -16.63418 -16.44866 -15.78356 -15.49628 -15.25982 -15.05896 -14.84609 -14.52828 -14.07827 -13.93943 -13.82477 -13.49420 -13.28743 -12.97362 -12.61296 -12.33412 -12.17904 -12.03395 -11.99504 -11.63919 -11.11480 -10.87889 -10.51452 -10.32653 -9.98512 -9.91502 -9.76733 -9.63921 -8.89795 -8.65356 -8.54088 -8.11540 -6.52485 -3.94687 0.14230 0.90162 1.72182 3.13097 3.20943 3.23459 3.29053 3.35724 3.58322 3.73084 3.90744 4.10350 4.32210 4.44593 4.50524 4.58185 4.85632 4.90205 5.00102 5.11339 5.15838 5.18905 5.22193 5.37720 5.62217 5.66674 5.70671 5.85861 5.93718 6.04652 6.11081 6.15598 6.33842 6.63583 7.44812 7.62439 7.77522 7.90401 8.38529 8.44448 9.03215 9.37680 9.85508 10.64237 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.042766 B = 0.002188 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.564569 B =12795.282433 C =13429.400358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.129 3.871 3 C -0.174 4.174 4 C -0.053 4.053 5 C -0.125 4.125 6 C -0.031 4.031 7 C -0.190 4.190 8 C 0.542 3.458 9 O -0.554 6.554 10 N -0.699 5.699 11 C 0.108 3.892 12 C 0.427 3.573 13 O -0.597 6.597 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.935 3.065 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.122 3.878 24 N -0.484 5.484 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.412 0.588 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.396 0.604 36 H 0.275 0.725 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.322 12.758 0.003 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.008 4.008 3 C -0.194 4.194 4 C -0.078 4.078 5 C -0.128 4.128 6 C -0.052 4.052 7 C -0.210 4.210 8 C 0.330 3.670 9 O -0.434 6.434 10 N -0.352 5.352 11 C -0.020 4.020 12 C 0.213 3.787 13 O -0.484 6.484 14 N -0.183 5.183 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.036 4.036 24 N -0.193 5.193 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.251 0.749 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.230 0.770 36 H 0.085 0.915 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -21.627 12.064 0.005 24.764 hybrid contribution 1.177 -0.054 -0.012 1.178 sum -20.450 12.010 -0.007 23.716 Atomic orbital electron populations 1.20754 0.88721 1.03620 1.03229 1.21475 0.97238 0.88384 0.93703 1.21911 0.94727 0.99366 1.03359 1.21827 0.94338 0.97686 0.93953 1.20044 0.94161 0.94597 1.03955 1.22153 0.91053 0.98926 0.93030 1.22999 0.93930 0.99024 1.05065 1.18214 0.88095 0.83506 0.77159 1.90799 1.67617 1.33956 1.51067 1.45617 1.07418 1.08911 1.73263 1.20973 0.80746 0.96880 1.03354 1.19733 0.83921 0.89371 0.85704 1.90497 1.52019 1.48489 1.57411 1.41791 1.04902 1.09060 1.62539 1.19686 0.91913 0.83540 1.48404 0.87701 1.25333 0.95499 1.00143 0.96742 1.69603 1.02065 1.32612 1.49170 0.85860 0.77294 0.81574 0.79168 1.19767 1.20851 1.19762 1.23183 0.89047 0.98151 0.93249 1.67512 1.09890 1.29148 1.12787 0.90221 0.90294 0.90615 0.84486 0.84163 0.84310 0.85122 0.74931 0.89714 0.89703 0.77014 0.91515 0.82016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 36.01 0.37 -0.24 16 2 C 0.13 1.12 6.78 -82.49 -0.56 0.56 16 3 C -0.17 -1.27 9.72 -39.51 -0.38 -1.65 16 4 C -0.05 -0.42 9.95 -38.80 -0.39 -0.80 16 5 C -0.13 -1.20 5.88 -104.90 -0.62 -1.82 16 6 C -0.03 -0.33 9.48 -37.15 -0.35 -0.68 16 7 C -0.19 -2.20 9.42 -37.50 -0.35 -2.55 16 8 C 0.54 8.43 7.74 -12.97 -0.10 8.32 16 9 O -0.55 -10.21 16.23 5.19 0.08 -10.12 16 10 N -0.70 -11.52 5.52 -62.89 -0.35 -11.87 16 11 C 0.11 1.98 6.15 -5.20 -0.03 1.95 16 12 C 0.43 9.75 7.85 -10.99 -0.09 9.66 16 13 O -0.60 -15.20 15.24 5.55 0.08 -15.12 16 14 N -0.55 -13.56 5.29 -10.97 -0.06 -13.61 16 15 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 16 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 17 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 18 N -0.89 -23.81 13.05 55.50 0.72 -23.09 16 19 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.12 1.23 10.59 -17.04 -0.18 1.05 16 24 N -0.48 -5.22 10.25 -9.06 -0.09 -5.32 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 28 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 29 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.14 1.47 7.52 -52.49 -0.39 1.08 16 31 H 0.13 1.21 6.10 -52.49 -0.32 0.88 16 32 H 0.41 6.59 7.42 -40.82 -0.30 6.28 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 35 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.16 1.37 6.19 -52.49 -0.32 1.05 16 LS Contribution 332.72 15.07 5.01 5.01 Total: -1.00 -32.65 332.72 -6.67 -39.32 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -4.13 Total: 13.38 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -2.93 Total: 5.93 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: 0.23 Total: -53.88 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.17 Total: -25.24 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.65 -6.67 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493752897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.547 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds