Wall clock time and date at job start Tue Mar 31 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 119.42945 * 2 1 4 4 C 1.38291 * 119.33522 * 180.02562 * 3 2 1 5 5 C 1.40266 * 118.26355 * 359.97438 * 4 3 2 6 6 C 1.47213 * 120.58469 * 179.97438 * 5 4 3 7 7 C 1.34810 * 119.99774 * 180.02562 * 6 5 4 8 8 C 1.46427 * 119.99825 * 179.97438 * 7 6 5 9 9 O 1.21697 * 119.99541 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00333 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00553 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47399 * 180.02562 * 11 10 8 13 13 O 1.21290 * 120.00130 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99906 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00039 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00155 * 0.02562 * 15 14 12 17 17 C 1.38949 * 120.00207 * 180.02562 * 15 14 12 18 18 N 1.31410 * 120.00145 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00090 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47391 * 59.99620 * 19 17 15 21 21 H 1.48501 * 109.47159 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46868 * 299.99632 * 19 17 15 23 23 C 1.39805 * 118.83258 * 359.97438 * 5 4 3 24 24 N 1.31660 * 120.52390 * 0.02562 * 23 5 4 25 25 H 1.08997 * 109.46856 * 90.00084 * 1 2 3 26 26 H 1.09003 * 109.46945 * 209.99929 * 1 2 3 27 27 H 1.09003 * 109.47042 * 330.00058 * 1 2 3 28 28 H 1.07996 * 120.33749 * 0.02562 * 3 2 1 29 29 H 1.07992 * 120.86959 * 180.02562 * 4 3 2 30 30 H 1.07992 * 119.99772 * 0.02562 * 6 5 4 31 31 H 1.08002 * 120.00442 * 359.97438 * 7 6 5 32 32 H 0.97009 * 119.99433 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47013 * 300.00585 * 11 10 8 34 34 H 1.09008 * 109.46792 * 59.99913 * 11 10 8 35 35 H 0.97001 * 120.00501 * 0.02562 * 14 12 11 36 36 H 0.96999 * 120.00802 * 179.97438 * 18 17 15 37 37 H 1.07996 * 119.73970 * 179.72138 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.2053 0.0000 4 6 3.5699 1.2031 -0.0005 5 6 4.2321 -0.0335 -0.0005 6 6 5.7029 -0.0955 -0.0016 7 6 6.3271 -1.2904 -0.0021 8 6 7.7901 -1.3521 -0.0038 9 8 8.4424 -0.3247 -0.0053 10 7 8.4142 -2.5466 -0.0038 11 6 9.8778 -2.6084 -0.0060 12 6 10.3198 -4.0491 -0.0061 13 8 9.4935 -4.9370 -0.0040 14 7 11.6334 -4.3510 -0.0086 15 6 12.0355 -5.6616 -0.0082 16 1 11.2998 -6.4522 -0.0063 17 6 13.3897 -5.9729 -0.0101 18 7 14.2850 -5.0110 -0.0119 19 14 13.9376 -7.7587 -0.0103 20 1 13.4116 -8.4378 -1.2216 21 1 15.4213 -7.8213 -0.0132 22 1 13.4155 -8.4367 1.2034 23 6 3.4707 -1.2060 0.0006 24 7 2.1553 -1.1492 0.0011 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6432 2.1384 0.0004 29 1 4.1255 2.1291 -0.0001 30 1 6.2818 0.8162 -0.0021 31 1 5.7482 -2.2022 -0.0013 32 1 7.8942 -3.3655 -0.0030 33 1 10.2611 -2.1110 -0.8970 34 1 10.2639 -2.1095 0.8830 35 1 12.2943 -3.6409 -0.0099 36 1 15.2304 -5.2282 -0.0129 37 1 3.9654 -2.1660 -0.0039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493752897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:05 Heat of formation + Delta-G solvation = -54.106655 kcal Electronic energy + Delta-G solvation = -20609.299579 eV Core-core repulsion = 17157.568513 eV Total energy + Delta-G solvation = -3451.731066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30318 -40.90465 -39.88018 -36.30182 -35.89803 -35.27822 -33.39820 -33.36427 -32.46942 -29.72875 -28.10400 -26.49004 -25.13041 -23.85351 -22.27184 -21.41037 -20.71704 -20.02175 -18.90176 -17.60601 -17.48297 -17.02744 -16.78186 -16.72714 -16.29820 -15.97917 -15.68776 -15.51365 -15.36567 -14.97048 -14.55549 -13.98763 -13.94839 -13.65651 -13.54553 -13.45145 -13.16774 -13.02076 -12.90435 -12.67747 -12.47599 -12.13832 -11.66523 -11.56930 -11.17795 -10.63495 -10.57532 -10.45419 -10.23742 -10.09490 -9.33860 -8.51452 -6.01887 -0.63103 0.27746 0.87077 1.37851 1.42640 1.53555 1.89415 2.04197 2.23894 2.32322 2.85345 3.11383 3.15556 3.29568 3.58082 3.75484 3.86720 3.94926 4.13628 4.20842 4.25128 4.41406 4.42163 4.45305 4.71854 4.78559 4.81183 4.96477 5.09236 5.17601 5.22347 5.29584 5.37648 5.40455 5.72019 5.90907 6.45217 6.52859 6.96629 7.02588 7.13291 7.43324 7.93461 8.65102 Molecular weight = 289.12amu Principal moments of inertia in cm(-1) A = 0.042766 B = 0.002188 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.564569 B =12795.282433 C =13429.400358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.118 3.882 3 C -0.172 4.172 4 C -0.050 4.050 5 C -0.143 4.143 6 C -0.004 4.004 7 C -0.210 4.210 8 C 0.545 3.455 9 O -0.587 6.587 10 N -0.702 5.702 11 C 0.121 3.879 12 C 0.432 3.568 13 O -0.624 6.624 14 N -0.559 5.559 15 C -0.339 4.339 16 H 0.087 0.913 17 C -0.011 4.011 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.272 1.272 22 H -0.270 1.270 23 C 0.111 3.889 24 N -0.516 5.516 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.170 0.830 29 H 0.165 0.835 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.415 0.585 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.399 0.601 36 H 0.280 0.720 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.681 13.857 -0.001 26.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.019 4.019 3 C -0.191 4.191 4 C -0.076 4.076 5 C -0.145 4.145 6 C -0.024 4.024 7 C -0.230 4.230 8 C 0.336 3.664 9 O -0.470 6.470 10 N -0.355 5.355 11 C -0.007 4.007 12 C 0.219 3.781 13 O -0.512 6.512 14 N -0.194 5.194 15 C -0.468 4.468 16 H 0.104 0.896 17 C -0.212 4.212 18 N -0.555 5.555 19 Si 0.821 3.179 20 H -0.195 1.195 21 H -0.196 1.196 22 H -0.195 1.195 23 C -0.047 4.047 24 N -0.225 5.225 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.188 0.812 29 H 0.182 0.818 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.254 0.746 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -23.001 13.178 0.001 26.508 hybrid contribution 1.426 -0.270 -0.012 1.451 sum -21.575 12.908 -0.011 25.141 Atomic orbital electron populations 1.20852 0.86829 1.04484 1.04056 1.22077 0.98718 0.88449 0.92607 1.22273 0.94591 1.00193 1.02032 1.22200 0.94978 0.97926 0.92459 1.20023 0.93395 0.95397 1.05712 1.22229 0.91672 0.98409 0.90104 1.22857 0.91567 1.00552 1.08043 1.18724 0.89479 0.82435 0.75802 1.90776 1.68670 1.34759 1.52750 1.45631 1.06478 1.09570 1.73830 1.20789 0.82192 0.93427 1.04321 1.20428 0.83075 0.91002 0.83614 1.90473 1.52616 1.50089 1.58046 1.41843 1.05684 1.08534 1.63377 1.19707 0.92308 0.84238 1.50536 0.89554 1.26142 0.95057 1.04223 0.95752 1.69670 1.02433 1.34283 1.49150 0.84917 0.77284 0.76620 0.79099 1.19499 1.19605 1.19489 1.23361 0.89234 0.98790 0.93283 1.67544 1.10237 1.30596 1.14160 0.89278 0.91036 0.88173 0.81226 0.81793 0.84358 0.83072 0.74637 0.88691 0.88679 0.76675 0.91044 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.16 71.24 0.72 -0.24 16 2 C 0.12 1.83 6.78 42.58 0.29 2.12 16 3 C -0.17 -2.00 9.72 22.32 0.22 -1.78 16 4 C -0.05 -0.67 9.95 22.78 0.23 -0.45 16 5 C -0.14 -2.53 5.88 -20.05 -0.12 -2.65 16 6 C 0.00 -0.07 9.48 23.84 0.23 0.15 16 7 C -0.21 -4.73 9.42 23.62 0.22 -4.51 16 8 C 0.54 16.75 7.74 86.38 0.67 17.42 16 9 O -0.59 -21.45 16.23 -4.34 -0.07 -21.52 16 10 N -0.70 -23.04 5.52 -471.10 -2.60 -25.64 16 11 C 0.12 4.41 6.15 85.63 0.53 4.94 16 12 C 0.43 19.97 7.85 87.66 0.69 20.66 16 13 O -0.62 -32.30 15.24 -3.06 -0.05 -32.34 16 14 N -0.56 -28.15 5.29 -306.99 -1.62 -29.77 16 15 C -0.34 -18.69 9.68 84.04 0.81 -17.88 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 18 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 19 Si 1.00 41.80 29.55 68.60 2.03 43.82 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 C 0.11 2.15 10.59 85.10 0.90 3.05 16 24 N -0.52 -10.66 10.25 -182.58 -1.87 -12.53 16 25 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.10 0.41 8.07 -2.39 -0.02 0.39 16 28 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 29 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 30 H 0.14 2.75 7.52 -2.91 -0.02 2.73 16 31 H 0.15 2.69 6.10 -2.91 -0.02 2.68 16 32 H 0.42 13.29 7.42 -92.70 -0.69 12.60 16 33 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.10 3.31 8.14 -2.38 -0.02 3.29 16 35 H 0.40 19.28 7.90 -92.71 -0.73 18.54 16 36 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 37 H 0.17 2.79 6.19 -2.91 -0.02 2.77 16 Total: -1.00 -70.28 332.72 1.66 -68.62 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.29 Total: 37.01 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: 5.85 Total: 20.73 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -5.81 Total: -116.32 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -0.12 Total: -53.86 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -70.28 1.66 -68.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493752897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.515 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds